FC877825

Overview
NameFC877825
Unique NameFC877825
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length923
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig6561 contig Ccv1_Contig6561:107..1029. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC877825 vs. ExPASy Swiss-Prot
Match: YIDC_SCHPO (Uncharacterized WD repeat-containing protein C227.12 OS=Schizosaccharomyces pombe GN=SPAC227.12 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 8.504e-18
Identity = 65/225 (28.89%), Postives = 107/225 (47.56%), Query Frame = 3
Query:  159 QFYGGGPLVV---SSDGS-FIACACGESINIVDLSNASIKSTIEGGSDTITALALSP--------DDKLLFSSGHS-REIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSALLSAGRDKVVNLWDLRDYSCKLTVPTY 794
            Q  G  P+ +   S++G+ F + + G  + + +  N S      G +D ++ L   P         ++L  ++G +   + +W  S    L   +GH      +A HPSG  L +A  D    +WDV  G      +GH   + SI   PD   SL+ SG +DA  R+WDL + K +  LD+H  ++ +MA + +G  L ++  D  V +WDLR  S   T+P +
Sbjct:  168 QIGGERPIAIVRFSNNGNHFASGSWGGQVKVWNSDNLSEVQLFRGHTDRVSGLDWYPLCQAWDADSEQLTLATGAADNTVCLWKASQSTPLLRLEGHLARVGRVAFHPSGDYLVSASFDTTWRLWDVHTGVELLMQEGHSEGIFSIACQPDG--SLVSSGGNDAIGRIWDLRSGKSIMVLDEHIRQIVAMAWSPNGYQLATSSADDTVKIWDLRKVSLAHTIPAH 390          

HSP 2 Score: 78.9518 bits (193), Expect = 4.367e-14
Identity = 45/159 (28.30%), Postives = 76/159 (47.80%), Query Frame = 3
Query:  276 EGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSALLSAGRDKVVNLW 752
            EG S+ I ++A  PD  L+ S G+    R+WDL + K +     H    + MA  P+G  LAT+ AD  V +WD+      H    H  +VS + +        + +   D  V++W+ L    + ++  H  +V  M++   G   +S+G D+ + LW
Sbjct:  304 EGHSEGIFSIACQPDGSLVSSGGNDAIGRIWDLRSGKSIMVLDEHIRQIVAMAWSPNGYQLATSSADDTVKIWDLRKVSLAHTIPAHSSLVSDVRYIESGVNRFIATSGYDGCVKLWNPLNCSLIKSMVGHEEKV--MSVDGYGDRFISSGYDRTIKLW 460          
BLAST of FC877825 vs. ExPASy Swiss-Prot
Match: TAF5_DROME (Transcription initiation factor TFIID subunit 5 OS=Drosophila melanogaster GN=Taf5 PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 8.504e-18
Identity = 50/186 (26.88%), Postives = 89/186 (47.85%), Query Frame = 3
Query:  228 SINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSALLSAGRDKVVNLWDLRDYSCKLTV 785
            ++ ++D  +  +  ++ G +  +   A +P+  LL S      IR+W L T  C+ +++GH  P   +   P G    +   D+   +W  D       F GH   V  + FHP++  + + +GS D TVR+WD +  + V  +  H   V+S+A ++ G  L S   D  + +WDL + S   T+
Sbjct:  431 NVRMLDDRSGEVTRSLMGHTGPVYRCAFAPEMNLLLSCSEDSTIRLWSLLTWSCVVTYRGHVYPVWDVRFAPHGYYFVSCSYDKTARLWATDSNQALRVFVGHLSDVDCVQFHPNS--NYVATGSSDRTVRLWDNMTGQSVRLMTGHKGSVSSLAFSACGRYLASGSVDHNIIIWDLSNGSLVTTL 614          

HSP 2 Score: 90.5077 bits (223), Expect = 1.450e-17
Identity = 56/183 (30.60%), Postives = 85/183 (46.45%), Query Frame = 3
Query:  207 IACACGESINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSALLSAGRDKVVNLWD 755
            ++C+   +I +  L   S   T  G    +  +  +P      S  + +  R+W   + + LR + GH      +  HP+   +AT  +DR V +WD   G       GHKG VSS+ F        L SGS D  + +WDL     V TL +H S VT++  + DG+ L +AG D  + LWD
Sbjct:  466 LSCSEDSTIRLWSLLTWSCVVTYRGHVYPVWDVRFAPHGYYFVSCSYDKTARLWATDSNQALRVFVGHLSDVDCVQFHPNSNYVATGSSDRTVRLWDNMTGQSVRLMTGHKGSVSSLAF--SACGRYLASGSVDHNIIIWDLSNGSLVTTLLRHTSTVTTITFSRDGTVLAAAGLDNNLTLWD 646          
BLAST of FC877825 vs. ExPASy Swiss-Prot
Match: KTNB1_ARATH (Katanin p80 WD40 repeat-containing subunit B1 homolog 1 OS=Arabidopsis thaliana GN=At5g23430 PE=2 SV=3)

HSP 1 Score: 91.2781 bits (225), Expect = 8.504e-18
Identity = 55/216 (25.46%), Postives = 94/216 (43.52%), Query Frame = 3
Query:  126 KKSYGCEPVLQQFYGGGPLVVSSDGSFIACACGES--INIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSALLSAGRDKVVNLWDLRDY 767
            K++Y  +  +        L +    S +    GE   +N+  +   +   ++ G S  I ++     + L+ +   S  I++WDL   K +R+  GH    I +  HP G   A+   D  + +WD+    C H +KGH   V+ + F P  D   + SG +D  V+VWDL A K +     H  ++ S+        L +   D+ V  WDL  +
Sbjct:    4 KRAYKLQEFVAHSAAVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLYGHSSGIDSVTFDASEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNVLRFTP--DGRWVVSGGEDNIVKVWDLTAGKLLTEFKSHEGQIQSLDFHPHEFLLATGSADRTVKFWDLETF 217          

HSP 2 Score: 84.3445 bits (207), Expect = 1.039e-15
Identity = 51/181 (28.18%), Postives = 83/181 (45.86%), Query Frame = 3
Query:  186 VSSDGSFIACACGES---INIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSALL 719
            V+ D S +  A G +   I + DL  A I  T+ G      ++   P  +   S      +++WD+    C+ ++KGH      +   P G  + + G D  V VWD+  G     FK H+G + S+ FHP   + LL +GS D TV+ WDL   + + +     + V  ++   DG  +L
Sbjct:   65 VTFDASEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNVLRFTPDGRWVVSGGEDNIVKVWDLTAGKLLTEFKSHEGQIQSLDFHP--HEFLLATGSADRTVKFWDLETFELIGSGGPETAGVRCLSFNPDGKTVL 243          
BLAST of FC877825 vs. ExPASy Swiss-Prot
Match: WDR38_MOUSE (WD repeat-containing protein 38 OS=Mus musculus GN=Wdr38 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 1.111e-17
Identity = 52/163 (31.90%), Postives = 81/163 (49.69%), Query Frame = 3
Query:  273 IEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVAT---LDKHFSRVTSMAITSDGSALLSAGRDKVVNLW 752
            + G    + +   SPD +L+ SS     IR+WD++  KCL   KGH      ++  P    LA+ G D++ +VW+V  G   H   GH   + S  F P +D   L +GS D+TV +WDL A   V +   L+ H   ++ +  ++ G  L S   DK + +W
Sbjct:   64 LAGHRGPVKSCCFSPDGRLIASSSSDHSIRLWDVARSKCLHVLKGHQRSVETVSFSPDSKQLASGGWDKRAIVWEVQSGRRVHLLVGHCDSIQSSDFSPTSDS--LATGSWDSTVHIWDLRASTPVVSYHNLEGHTGNISCLCYSASG-LLASGSWDKTICVW 223          

HSP 2 Score: 84.7297 bits (208), Expect = 7.959e-16
Identity = 46/156 (29.49%), Postives = 74/156 (47.44%), Query Frame = 3
Query:  294 ITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSALLSAGRDKVVNLWDLR 761
            +   A SPD + L ++     + VW   + + L    GH GP       P G L+A++ +D  + +WDV    C H  KGH+  V ++ F PD+ +  L SG  D    VW++ + + V  L  H   + S   +    +L +   D  V++WDLR
Sbjct:   29 VNCSAFSPDGRTLLTASDDGCVYVWGTKSGRLLWRLAGHRGPVKSCCFSPDGRLIASSSSDHSIRLWDVARSKCLHVLKGHQRSVETVSFSPDSKQ--LASGGWDKRAIVWEVQSGRRVHLLVGHCDSIQSSDFSPTSDSLATGSWDSTVHIWDLR 182          

HSP 3 Score: 82.8037 bits (203), Expect = 3.024e-15
Identity = 60/217 (27.65%), Postives = 92/217 (42.40%), Query Frame = 3
Query:  189 SSDGSFIACACGE-SINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGG---FCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSALLSAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPP 827
            S DG  IA +  + SI + D++ +     ++G   ++  ++ SPD K L S G  +   VW++ + + +    GH          P+   LAT   D  V +WD+         H  +GH G +S + +   +   LL SGS D T+ VW          L  H   V S+A + D   L SAG  + V +WD     C  T+     V   C   P
Sbjct:   77 SPDGRLIASSSSDHSIRLWDVARSKCLHVLKGHQRSVETVSFSPDSKQLASGGWDKRAIVWEVQSGRRVHLLVGHCDSIQSSDFSPTSDSLATGSWDSTVHIWDLRASTPVVSYHNLEGHTGNISCLCY---SASGLLASGSWDKTICVWKPTTNNLPLQLKGHTIWVNSLAFSPDELKLASAGYSRTVKVWDCLTGKCLETLKGMLDVAHACIFTP 290          

HSP 4 Score: 70.0922 bits (170), Expect = 2.029e-11
Identity = 41/124 (33.06%), Postives = 58/124 (46.77%), Query Frame = 3
Query:  390 LRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSALLSAGRDKVVNLWDLR 761
            +R +  H G     A  P G  L TA  D  V VW    G       GH+G V S  F P  D  L+ S S D ++R+WD+   KC+  L  H   V +++ + D   L S G DK   +W+++
Sbjct:   19 VRFYGQHHGEVNCSAFSPDGRTLLTASDDGCVYVWGTKSGRLLWRLAGHRGPVKSCCFSP--DGRLIASSSSDHSIRLWDVARSKCLHVLKGHQRSVETVSFSPDSKQLASGGWDKRAIVWEVQ 140          

HSP 5 Score: 68.9366 bits (167), Expect = 4.519e-11
Identity = 48/151 (31.79%), Postives = 67/151 (44.37%), Query Frame = 3
Query:  279 GGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSW---KGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSALLS 722
            G  D+I +   SP    L +      + +WDL     + S+   +GH G  I   C+ + GLLA+   D+ + VW           KGH   V+S+ F PD  K  L S     TV+VWD L  KC+ TL        +   T DG  L+S
Sbjct:  150 GHCDSIQSSDFSPTSDSLATGSWDSTVHIWDLRASTPVVSYHNLEGHTGN-ISCLCYSASGLLASGSWDKTICVWKPTTNNLPLQLKGHTIWVNSLAFSPDELK--LASAGYSRTVKVWDCLTGKCLETLKGMLDVAHACIFTPDGKLLVS 297          
BLAST of FC877825 vs. ExPASy Swiss-Prot
Match: TUP1_KLULA (General transcriptional corepressor TUP1 OS=Kluyveromyces lactis GN=TUP1 PE=1 SV=2)

HSP 1 Score: 90.5077 bits (223), Expect = 1.450e-17
Identity = 56/166 (33.73%), Postives = 79/166 (47.59%), Query Frame = 3
Query:  294 ITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDK-------HFSRVTSMAITSDGSALLSAGRDKVVNLWDLRDYS 770
            I ++  SPD K L +    + IR+WDL T K + + KGH+     +   PSG  L +   DR V +WD+  G C+       G V+++   P   K  + +GS D TVRVWD      V  LD        H   V S+  T DG  ++S   D+ V LW+L   S
Sbjct:  409 IRSVCFSPDGKFLATGAEDKLIRIWDLETKKIVMTLKGHEQDIYSLDYFPSGNKLVSGSGDRTVRIWDLTTGTCSLTLSIEDG-VTTVAVSPGEGK-FIAAGSLDRTVRVWDSDTGFLVERLDSENELGTGHRDSVYSVVFTRDGKGVVSGSLDRSVKLWNLNGLS 572          

HSP 2 Score: 87.0409 bits (214), Expect = 1.604e-16
Identity = 63/206 (30.58%), Postives = 88/206 (42.72%), Query Frame = 3
Query:  189 SSDGSFIACACGES-INIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYF-------KGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLA-------KKCVATLDKHFSRVTSMAITSDGSALLSAGRDKVVNLWDLR 761
            S DG F+A    +  I I DL    I  T++G    I +L   P    L S    R +R+WDL+T  C  +    DG          G  +A    DR V VWD D GF             GH+  V S++F    D   + SGS D +V++W+L          +C  T   H   V S+A T +   +LS  +D+ V  WD +
Sbjct:  415 SPDGKFLATGAEDKLIRIWDLETKKIVMTLKGHEQDIYSLDYFPSGNKLVSGSGDRTVRIWDLTTGTCSLTLSIEDGVTTVAVSPGEGKFIAAGSLDRTVRVWDSDTGFLVERLDSENELGTGHRDSVYSVVF--TRDGKGVVSGSLDRSVKLWNLNGLSGQKSHAECEVTYTGHKDFVLSVATTQNDEYILSGSKDRGVLFWDTK 618          
BLAST of FC877825 vs. ExPASy Swiss-Prot
Match: PRP19_BOVIN (Pre-mRNA-processing factor 19 OS=Bos taurus GN=PRPF19 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.450e-17
Identity = 53/197 (26.90%), Postives = 97/197 (49.24%), Query Frame = 3
Query:  180 LVVSSDGSFIACACGESINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVD-GGFCTHYFKGHKGV-VSSILFHPDTDKSLLF-SGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSALLSAGRDKVVNLWDLR 761
            L  S     +     +++ + D S+  I +T++G +  +T++   P  +L+FS+     IR+W +    C++  + H+    G++ H +G  L ++  D+     D+  G   T       G  ++   FHPD    L+F +G+ D+ +++WDL  +  VA    H   +TS+A + +G  L +A  D  V LWDLR
Sbjct:  229 LCPSDTNKILTGGADKNVVVFDKSSEQILATLKGHTKKVTSVVFHPSQELVFSASPDATIRIWSVPNASCVQVVRAHESAVTGLSLHATGDYLLSSSDDQYWAFSDIQTGRVLTKVTDETSGCSLTCAQFHPD---GLIFGTGTMDSQIKIWDLKERTNVANFPGHSGPITSIAFSENGYYLATAADDSSVKLWDLR 422          
BLAST of FC877825 vs. ExPASy Swiss-Prot
Match: WDR69_XENTR (WD repeat-containing protein 69 OS=Xenopus tropicalis GN=wdr69 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.894e-17
Identity = 53/203 (26.11%), Postives = 94/203 (46.31%), Query Frame = 3
Query:  192 SDGSFIACACGESINIVDLSNASIKSTIEGGSDTITALALS-PDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSALLSAGRDKVVNLWDLRDYSCKLTVPTYE 797
            S  SFI  +   +  + D ++     T+EG  + + A+  + P    + +    +  ++W   T KC  +++GH    + +A +P   L+AT   D    +WD+  G       GH   + S+ F+   D+  L +GS D TV VW++ + + + TL  H   ++S     D S + +A  DK   LWD  +  C  T+  +E
Sbjct:  103 SGSSFITGSYDRTCKVWDTASGEELHTLEGHRNVVYAIQFNNPYGDKIATGSFDKTCKLWSAETGKCYHTFRGHTAEIVCLAFNPQSTLIATGSMDTTAKLWDIQSGEEALTLSGHAAEIISLSFNTTGDR--LITGSFDHTVSVWEIPSGRRIHTLIGHRGEISSAQFNWDCSLIATASMDKSCKLWDSLNGKCVATLTGHE 303          

HSP 2 Score: 85.5001 bits (210), Expect = 4.666e-16
Identity = 53/196 (27.04%), Postives = 88/196 (44.90%), Query Frame = 3
Query:  270 TIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSALLSAGRDKVVNLWDLRDYSCKLTVPTYE-MVEAVCAIPPGSAFDSFSS 854
            T  G +  I  LA +P   L+ +       ++WD+ + +   +  GH    I ++ + +G  L T   D  V VW++  G   H   GH+G +SS  F  + D SL+ + S D + ++WD L  KCVATL  H   V  +   S G  + +A  D    ++      C   +  +E  +  +C    G+   + SS
Sbjct:  172 TFRGHTAEIVCLAFNPQSTLIATGSMDTTAKLWDIQSGEEALTLSGHAAEIISLSFNTTGDRLITGSFDHTVSVWEIPSGRRIHTLIGHRGEISSAQF--NWDCSLIATASMDKSCKLWDSLNGKCVATLTGHEDEVLDVTFDSTGQLVATASADGTARVYSASSRKCLAKLEGHEGEISKICFNAQGNRILTASS 365          

HSP 3 Score: 80.8777 bits (198), Expect = 1.149e-14
Identity = 39/156 (25.00%), Postives = 80/156 (51.28%), Query Frame = 3
Query:  294 ITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMAC-HPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSALLSAGRDKVVNLWDL 758
            +T +A +       +  + R  +VWD ++ + L + +GH      +   +P G  +AT   D+   +W  + G C H F+GH   +  + F+P +  +L+ +GS D T ++WD+ + +   TL  H + + S++  + G  L++   D  V++W++
Sbjct:   95 LTNVAFNKSGSSFITGSYDRTCKVWDTASGEELHTLEGHRNVVYAIQFNNPYGDKIATGSFDKTCKLWSAETGKCYHTFRGHTAEIVCLAFNPQS--TLIATGSMDTTAKLWDIQSGEEALTLSGHAAEIISLSFNTTGDRLITGSFDHTVSVWEI 248          

HSP 4 Score: 80.1073 bits (196), Expect = 1.960e-14
Identity = 44/177 (24.86%), Postives = 81/177 (45.76%), Query Frame = 3
Query:  243 DLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSALLSAGRDKVVNLWDLRDYSC 773
            D+ +     T+ G +  I +L+ +     L +      + VW++ + + + +  GH G       +    L+ATA  D+   +WD   G C     GH+  V  + F  D+   L+ + S D T RV+   ++KC+A L+ H   ++ +   + G+ +L+A  DK   LW+     C
Sbjct:  205 DIQSGEEALTLSGHAAEIISLSFNTTGDRLITGSFDHTVSVWEIPSGRRIHTLIGHRGEISSAQFNWDCSLIATASMDKSCKLWDSLNGKCVATLTGHEDEVLDVTF--DSTGQLVATASADGTARVYSASSRKCLAKLEGHEGEISKICFNAQGNRILTASSDKTSRLWNPHTGEC 379          

HSP 5 Score: 77.7962 bits (190), Expect = 9.729e-14
Identity = 39/175 (22.29%), Postives = 84/175 (48.00%), Query Frame = 3
Query:  228 SINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSALLSAGRDKVVNLW 752
            ++++ ++ +     T+ G    I++   + D  L+ ++   +  ++WD    KC+ +  GH+   + +    +G L+ATA AD    V+      C    +GH+G +S I F+   ++  + + S D T R+W+    +C+  L  H   + S A   +G+ +++  +D    +W
Sbjct:  242 TVSVWEIPSGRRIHTLIGHRGEISSAQFNWDCSLIATASMDKSCKLWDSLNGKCVATLTGHEDEVLDVTFDSTGQLVATASADGTARVYSASSRKCLAKLEGHEGEISKICFNAQGNR--ILTASSDKTSRLWNPHTGECLQVLKGHTDEIFSCAFNYEGNTIITGSKDNTCRIW 414          
BLAST of FC877825 vs. ExPASy Swiss-Prot
Match: WDR38_HUMAN (WD repeat-containing protein 38 OS=Homo sapiens GN=WDR38 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.894e-17
Identity = 64/240 (26.67%), Postives = 105/240 (43.75%), Query Frame = 3
Query:  189 SSDGSFIACA-CGESINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWD---VDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSALLSAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAI-PPGSAFDSFSSSYNQQTIKKKCRS 893
            S DG   A A C  ++ + D++ A     ++G   ++  ++ SPD + L S G  + + +WD+ + + LR   GH          P+   LAT   D  V +WD   V         +GH   +S + +   +   LL SGS D T+ +W       +  L  H + V S+A + D   L SAG  ++V +WD     C  T+     V   CA  P G    S ++   ++ I +  +S
Sbjct:   72 SPDGHLFASASCDCTVRLWDVARAKCLRVLKGHQRSVETVSFSPDSRQLASGGWDKRVMLWDVQSGQMLRLLVGHRDSIQSSDFSPTVNCLATGSWDSTVHIWDLRMVTPAVSHQALEGHSANISCLCY---SASGLLASGSWDKTIHIWKPTTSSLLIQLKGHVTWVKSIAFSPDELWLASAGYSRMVKVWDCNTGKCLETLKGVLDVAHTCAFTPDGKILVSGAADQTRRQISRTSKS 308          

HSP 2 Score: 78.1814 bits (191), Expect = 7.449e-14
Identity = 46/156 (29.49%), Postives = 73/156 (46.79%), Query Frame = 3
Query:  294 ITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSALLSAGRDKVVNLWDLR 761
            + + A SPD ++L +      +  W+  + + L    GH GP       P G L A+A  D  V +WDV    C    KGH+  V ++ F PD+ +  L SG  D  V +WD+ + + +  L  H   + S   +   + L +   D  V++WDLR
Sbjct:   24 VNSSAFSPDGQMLLTGSEDGCVYGWETRSGQLLWRLGGHTGPVKFCRFSPDGHLFASASCDCTVRLWDVARAKCLRVLKGHQRSVETVSFSPDSRQ--LASGGWDKRVMLWDVQSGQMLRLLVGHRDSIQSSDFSPTVNCLATGSWDSTVHIWDLR 177          

HSP 3 Score: 69.3218 bits (168), Expect = 3.460e-11
Identity = 42/118 (35.59%), Postives = 53/118 (44.92%), Query Frame = 3
Query:  408 HDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSALLSAGRDKVVNLWDLR 761
            H G     A  P G +L T   D  V  W+   G       GH G V    F P  D  L  S S D TVR+WD+   KC+  L  H   V +++ + D   L S G DK V LWD++
Sbjct:   20 HGGEVNSSAFSPDGQMLLTGSEDGCVYGWETRSGQLLWRLGGHTGPVKFCRFSP--DGHLFASASCDCTVRLWDVARAKCLRVLKGHQRSVETVSFSPDSRQLASGGWDKRVMLWDVQ 135          
BLAST of FC877825 vs. ExPASy Swiss-Prot
Match: PRP19_RAT (Pre-mRNA-processing factor 19 OS=Rattus norvegicus GN=Prpf19 PE=2 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 1.894e-17
Identity = 53/197 (26.90%), Postives = 96/197 (48.73%), Query Frame = 3
Query:  180 LVVSSDGSFIACACGESINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVD-GGFCTHYFKGHKGV-VSSILFHPDTDKSLLF-SGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSALLSAGRDKVVNLWDLR 761
            L  S     +     +++ + D S   I +T++G +  +T++   P  +L+FS+     IR+W +    C++  + H+    G++ H +G  L ++  D+     D+  G   T       G  ++   FHPD    L+F +G+ D+ +++WDL  +  VA    H   +TS+A + +G  L +A  D  V LWDLR
Sbjct:  229 LCPSDTNKILTGGADKNVVVFDKSTEQILATLKGHTKKVTSVVFHPSQELVFSASPDATIRIWSVPNTSCVQVVRAHESAVTGLSLHATGDYLLSSSDDQYWAFSDIQTGRVLTKVTDETSGCSLTCAQFHPD---GLIFGTGTMDSQIKIWDLKERTNVANFPGHSGPITSIAFSENGYYLATAADDSSVKLWDLR 422          
BLAST of FC877825 vs. ExPASy Swiss-Prot
Match: PRP19_MOUSE (Pre-mRNA-processing factor 19 OS=Mus musculus GN=Prpf19 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.894e-17
Identity = 53/197 (26.90%), Postives = 96/197 (48.73%), Query Frame = 3
Query:  180 LVVSSDGSFIACACGESINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVD-GGFCTHYFKGHKGV-VSSILFHPDTDKSLLF-SGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSALLSAGRDKVVNLWDLR 761
            L  S     +     +++ + D S   I +T++G +  +T++   P  +L+FS+     IR+W +    C++  + H+    G++ H +G  L ++  D+     D+  G   T       G  ++   FHPD    L+F +G+ D+ +++WDL  +  VA    H   +TS+A + +G  L +A  D  V LWDLR
Sbjct:  229 LCPSDTNKILTGGADKNVVVFDKSTEQILATLKGHTKKVTSVVFHPSQELVFSASPDATIRIWSVPNTSCVQVVRAHESAVTGLSLHATGDYLLSSSDDQYWAFSDIQTGRVLTKVTDETSGCSLTCAQFHPD---GLIFGTGTMDSQIKIWDLKERTNVANFPGHSGPITSIAFSENGYYLATAADDSSVKLWDLR 422          
The following BLAST results are available for this feature:
BLAST of FC877825 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 370
Match NameE-valueIdentityDescription
YIDC_SCHPO8.504e-1828.89Uncharacterized WD repeat-containing protein C227.... [more]
TAF5_DROME8.504e-1826.88Transcription initiation factor TFIID subunit 5 OS... [more]
KTNB1_ARATH8.504e-1825.46Katanin p80 WD40 repeat-containing subunit B1 homo... [more]
WDR38_MOUSE1.111e-1731.90WD repeat-containing protein 38 OS=Mus musculus GN... [more]
TUP1_KLULA1.450e-1733.73General transcriptional corepressor TUP1 OS=Kluyve... [more]
PRP19_BOVIN1.450e-1726.90Pre-mRNA-processing factor 19 OS=Bos taurus GN=PRP... [more]
WDR69_XENTR1.894e-1726.11WD repeat-containing protein 69 OS=Xenopus tropica... [more]
WDR38_HUMAN1.894e-1726.67WD repeat-containing protein 38 OS=Homo sapiens GN... [more]
PRP19_RAT1.894e-1726.90Pre-mRNA-processing factor 19 OS=Rattus norvegicus... [more]
PRP19_MOUSE1.894e-1726.90Pre-mRNA-processing factor 19 OS=Mus musculus GN=P... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA65DB04RM1 IVIA1 Citrus clementina cDNA clone IC0AAA65DB04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877825 ID=FC877825; Name=FC877825; organism=Citrus clementina; type=EST; length=923bp
CCACAGGCTCATTGATTCGCAGGTCACTGTCGCTCTCCTCGTTACAGGAA
AATCCGGGTTTCAGTCCTGACCCGATAAAAGAGTAATCTTGAGTTTACGG
GTCCGCAATGGCATCCCTACCACTAAAGAAGAGCTACGGATGCGAACCTG
TCTTACAACAGTTCTACGGCGGTGGGCCGTTGGTGGTTTCATCGGACGGC
TCATTCATCGCGTGTGCGTGCGGCGAGTCTATCAACATTGTGGACTTATC
AAATGCCTCCATAAAGTCAACAATTGAAGGCGGGTCGGATACAATCACGG
CCTTGGCCCTTAGTCCCGACGATAAGCTGCTCTTCTCTTCTGGTCACAGT
CGGGAAATTAGGGTTTGGGATTTATCAACACTAAAATGTTTGCGCTCCTG
GAAGGGCCATGACGGTCCTGCAATTGGAATGGCATGTCACCCATCCGGTG
GATTGCTTGCTACTGCAGGAGCTGATAGGAAAGTTCTTGTTTGGGATGTC
GATGGTGGCTTTTGCACTCATTACTTCAAAGGTCATAAGGGAGTTGTCAG
TAGTATCTTGTTTCATCCTGACACGGATAAATCTCTTCTTTTCTCTGGTA
GTGATGATGCAACTGTGCGAGTTTGGGATCTTTTAGCCAAGAAATGTGTT
GCAACTTTGGATAAGCATTTCTCAAGAGTTACTTCTATGGCTATAACTAG
TGATGGATCGGCATTGCTCAGTGCTGGAAGAGATAAGGTTGTAAACTTGT
GGGACCTTCGTGACTACAGTTGCAAGTTGACTGTGCCAACATATGAGATG
GTTGAAGCTGTGTGTGCCATTCCTCCTGGGAGTGCTTTTGATTCATTTTC
TAGTTCATACAATCAGCAGACTATAAAGAAAAAATGCAGGTCACTAGAAA
ATCATTTCATCACTGTCGGTGAA
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