FC877828

Overview
NameFC877828
Unique NameFC877828
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length866
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig6544 contig Ccv1_Contig6544:1..866. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC877828 vs. ExPASy Swiss-Prot
Match: ODP2_SCHPO (Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial OS=Schizosaccharomyces pombe GN=SPCC794.07 PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 3.961e-22
Identity = 48/92 (52.17%), Postives = 66/92 (71.74%), Query Frame = 2
Query:  530 PPHQEIGMPSLSPTMQEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVEEEEDIPKFKDYS 805
            P H  I MP+LSPTM  GNI  + KK GDK+ PG+VLCE+ETDKA ++ E  +EGYLAKI+   G+K++ VG+ +A+TVE E D+    D++
Sbjct:   51 PAHTVINMPALSPTMTTGNIGAFQKKIGDKIEPGDVLCEIETDKAQIDFEQQDEGYLAKILIETGTKDVPVGKPLAVTVENEGDVAAMADFT 142          
BLAST of FC877828 vs. ExPASy Swiss-Prot
Match: ODPX_HUMAN (Pyruvate dehydrogenase protein X component, mitochondrial OS=Homo sapiens GN=PDHX PE=1 SV=3)

HSP 1 Score: 104.76 bits (260), Expect = 6.757e-22
Identity = 54/97 (55.67%), Postives = 69/97 (71.13%), Query Frame = 2
Query:  542 EIGMPSLSPTMQEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVEEEED-----IPKFKDYSPSVS 817
            +I MPSLSPTM+EGNI +WLKKEG+ VS G+ LCE+ETDKA V ++  ++G LAKIV  +GSK I++G +I + VEE ED     IPK     P VS
Sbjct:   58 KILMPSLSPTMEEGNIVKWLKKEGEAVSAGDALCEIETDKAVVTLDASDDGILAKIVVEEGSKNIRLGSLIGLIVEEGEDWKHVEIPKDVGPPPPVS 154          
BLAST of FC877828 vs. ExPASy Swiss-Prot
Match: ODP2_RICPR (Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex OS=Rickettsia prowazekii GN=pdhC PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 6.757e-22
Identity = 49/80 (61.25%), Postives = 65/80 (81.25%), Query Frame = 2
Query:  542 EIGMPSLSPTMQEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVEEEED 781
            +I MP+LSPTM+EGN+ARWLKKEGDKV+PGEV+ E+ETDKAT+E+E ++EG LAKI+    S+ + V  +IA+  EE ED
Sbjct:    4 KILMPALSPTMREGNLARWLKKEGDKVNPGEVIAEIETDKATMEVESVDEGILAKIIIPQNSQNVPVNSLIAVLSEEGED 83          
BLAST of FC877828 vs. ExPASy Swiss-Prot
Match: ODPX_BOVIN (Pyruvate dehydrogenase protein X component OS=Bos taurus GN=PDHX PE=1 SV=3)

HSP 1 Score: 103.99 bits (258), Expect = 1.153e-21
Identity = 48/80 (60.00%), Postives = 63/80 (78.75%), Query Frame = 2
Query:  542 EIGMPSLSPTMQEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVEEEED 781
            +I MPSLSPTM+EGNI +WLKKEG+ VS G+ LCE+ETDKA V ++  ++G LAKIV  +GSK I++G +I + VEE ED
Sbjct:   58 KILMPSLSPTMEEGNIVKWLKKEGEAVSAGDALCEIETDKAVVTLDASDDGILAKIVVAEGSKNIRLGSLIGLLVEEGED 137          
BLAST of FC877828 vs. ExPASy Swiss-Prot
Match: ODP2_RICCN (Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex OS=Rickettsia conorii GN=pdhC PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 1.153e-21
Identity = 55/95 (57.89%), Postives = 70/95 (73.68%), Query Frame = 2
Query:  542 EIGMPSLSPTMQEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVEEEE---DIPKFKDYSPSVS 817
            +I MP+LSPTM EGN+ARWLKKEGDKV+PGEV+ E+ETDKAT+E+E ++EG LAKIV    S+ + V  +IA+  EE E   DI  F   + SVS
Sbjct:    4 KILMPALSPTMTEGNLARWLKKEGDKVNPGEVIAEIETDKATMEVEAVDEGILAKIVIPQNSQNVPVNSLIAVLSEEGEEKTDIDAFIAKNNSVS 98          
BLAST of FC877828 vs. ExPASy Swiss-Prot
Match: ODP2_RICTY (Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex OS=Rickettsia typhi GN=pdhC PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 2.568e-21
Identity = 53/95 (55.79%), Postives = 71/95 (74.74%), Query Frame = 2
Query:  542 EIGMPSLSPTMQEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVEEEE---DIPKFKDYSPSVS 817
            +I MP+LSPTM++GN+ARWLKKEGDKV+PGEV+ E+ETDKAT+E+E ++EG LAKI+    S+ + V  +IA+  EE E   DI  F   + SVS
Sbjct:    4 KILMPALSPTMKDGNLARWLKKEGDKVNPGEVIAEIETDKATMEVESVDEGILAKIIIPQNSQNVPVNSLIAVLSEEGESTADIDAFIAKNNSVS 98          
BLAST of FC877828 vs. ExPASy Swiss-Prot
Match: ODP2_RICFE (Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex OS=Rickettsia felis GN=pdhC PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 2.568e-21
Identity = 54/97 (55.67%), Postives = 69/97 (71.13%), Query Frame = 2
Query:  542 EIGMPSLSPTMQEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVEEEED-------IPKFKDYSPS 811
            +I MP LSPTM EGN+ARWLKKEGDKV+PGEV+ E+ETDKAT+E+E ++EG LAKIV    S+ + V  +IA+  EE E+       I K  + SPS
Sbjct:    4 KILMPVLSPTMTEGNLARWLKKEGDKVNPGEVIAEIETDKATMEVEAVDEGILAKIVIPQNSQNVPVNSLIAVLSEEGEEKTDIDAFIAKNNNVSPS 100          
BLAST of FC877828 vs. ExPASy Swiss-Prot
Match: ODPX_MOUSE (Pyruvate dehydrogenase protein X component, mitochondrial OS=Mus musculus GN=Pdhx PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 5.720e-21
Identity = 51/94 (54.26%), Postives = 68/94 (72.34%), Query Frame = 2
Query:  551 MPSLSPTMQEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVEEEED-----IPKFKDYSPSVS 817
            MPSLSPTM++GNI +WL+KEG+ VS G+ LCE+ETDKA V ++  ++G LAKIV  +G+K I++G +IA+ VEE ED     IPK     P VS
Sbjct:   61 MPSLSPTMEQGNIVKWLRKEGEAVSAGDSLCEIETDKAVVTLDANDDGILAKIVVEEGAKNIQLGSLIALMVEEGEDWKQVEIPKDVSAPPPVS 154          
BLAST of FC877828 vs. ExPASy Swiss-Prot
Match: ODP2_RHIME (Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex OS=Rhizobium meliloti GN=pdhC PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 8.260e-20
Identity = 45/80 (56.25%), Postives = 63/80 (78.75%), Query Frame = 2
Query:  545 IGMPSLSPTMQEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVEEEEDI 784
            I MP+LSPTM+EGN+A+WL KEGDKV  G+V+ E+ETDKAT+E+E ++EG +AKIV   G++ +KV  +IA+   E ED+
Sbjct:    5 ITMPALSPTMEEGNLAKWLVKEGDKVKSGDVIAEIETDKATMEVEAVDEGTVAKIVVPAGTEGVKVNALIAVLAAEGEDV 84          
BLAST of FC877828 vs. ExPASy Swiss-Prot
Match: ODP2_DICDI (Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial OS=Dictyostelium discoideum GN=pdhC PE=2 SV=2)

HSP 1 Score: 96.6709 bits (239), Expect = 1.840e-19
Identity = 53/111 (47.75%), Postives = 77/111 (69.37%), Query Frame = 2
Query:  485 SKVHLKRGFSSDSGLPPHQEIGMPSLSPTMQEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECME-EGYLAKIVKGDGSKEIKVGEVIAITVEEEEDIPK-FKDYSPS 811
            S++  KR +SS       +EI MP+LSP+M EGNI +W KKEGD++  G+V+ EVETDKAT++ +  +  GYLAKI+  +G+K I++ + IAI V ++EDI    K+Y PS
Sbjct:   71 SEILNKRSYSSKG-----KEITMPALSPSMTEGNIVQWKKKEGDQIKAGDVIAEVETDKATMDFQYEDGNGYLAKILIPEGTKGIEINKPIAIIVSKKEDIESAVKNYKPS 176          

HSP 2 Score: 95.9005 bits (237), Expect = 3.139e-19
Identity = 44/93 (47.31%), Postives = 65/93 (69.89%), Query Frame = 2
Query:  530 PPHQEIGMPSLSPTMQEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECME-EGYLAKIVKGDGSKEIKVGEVIAITVEEEEDIPKFKDYS 805
            P H+ +GMP+LSP+M+ G IA W KKEGD++  G+ + EVETDKAT++ +  +  GYLAKI+   G+  I++ + + I V+ +ED  KF DYS
Sbjct:  204 PAHKVVGMPALSPSMETGGIASWTKKEGDQIKAGDAIAEVETDKATMDFQYEDGNGYLAKILVPGGTSGIQINQPVCIIVKNKEDCDKFADYS 296          
The following BLAST results are available for this feature:
BLAST of FC877828 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
ODP2_SCHPO3.961e-2252.17Dihydrolipoyllysine-residue acetyltransferase comp... [more]
ODPX_HUMAN6.757e-2255.67Pyruvate dehydrogenase protein X component, mitoch... [more]
ODP2_RICPR6.757e-2261.25Dihydrolipoyllysine-residue acetyltransferase comp... [more]
ODPX_BOVIN1.153e-2160.00Pyruvate dehydrogenase protein X component OS=Bos ... [more]
ODP2_RICCN1.153e-2157.89Dihydrolipoyllysine-residue acetyltransferase comp... [more]
ODP2_RICTY2.568e-2155.79Dihydrolipoyllysine-residue acetyltransferase comp... [more]
ODP2_RICFE2.568e-2155.67Dihydrolipoyllysine-residue acetyltransferase comp... [more]
ODPX_MOUSE5.720e-2154.26Pyruvate dehydrogenase protein X component, mitoch... [more]
ODP2_RHIME8.260e-2056.25Dihydrolipoyllysine-residue acetyltransferase comp... [more]
ODP2_DICDI1.840e-1947.75Dihydrolipoyllysine-residue acetyltransferase comp... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA65DB05RM1 IVIA1 Citrus clementina cDNA clone IC0AAA65DB05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877828 ID=FC877828; Name=FC877828; organism=Citrus clementina; type=EST; length=866bp
AAAGTCCGAACCCTAATAAATTTCACGTTTTTAACCAAACTAAATCAGAC
CCTCTTTGATTCCTACTCTGTTCGTTCATCTCTCACTAAAAAAGCAATTT
AAAAAAAAAAAAACTATTTTTCTTGCTGAATTTTCATTGCTCTTTTTCTG
TTGATTTTTTTAGTGGTTTTTGGAAATATTAGTCATGGCGTATGCATCTC
ACATCATCAATCACTCTAAAAAGTTGAAGAATGTTTCAAATTTGCTGTGG
CATGAGAATGCTGTTTTGGTTCGTTGGTTTTCAAATGATGCTGTTAGTAG
CAGGGATGATCTTCTAAAGATTCATCGCCATGTATATGTGCCTGTGGAGA
GTGAAAGAGTCATTAATTCATCCGCCATTAGCTCTGTATCATCAGTAGGT
GTATTTAAGAAAAAATTTTGTAGTGTGGCAAGAAAAGCCGGAAGTCCCAT
TGCTGGATCTTTCCTCAACAGAGGATTTGCATGTTCAAAAGTACACTTGA
AGAGAGGATTTTCGTCAGATTCAGGTCTTCCTCCACACCAGGAGATTGGA
ATGCCCTCCCTTTCACCCACAATGCAAGAGGGTAATATTGCTCGGTGGTT
GAAGAAAGAGGGCGACAAGGTGTCTCCCGGTGAAGTACTCTGTGAAGTTG
AAACTGATAAAGCAACTGTTGAGATGGAATGTATGGAGGAAGGTTATCTT
GCCAAGATAGTAAAAGGAGATGGGTCAAAAGAAATTAAAGTTGGTGAGGT
TATTGCTATCACTGTTGAAGAAGAGGAAGATATTCCGAAGTTTAAAGATT
ACAGTCCTTCAGTGTCTGATGCTGGTGCTGCTCCAGCTAAAGAGCCTTCT
CCTCCTCCCCCTCCAA
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