FC877828

Overview
NameFC877828
Unique NameFC877828
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length866
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig6544 contig Ccv1_Contig6544:1..866. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC877828 vs. ExPASy Swiss-Prot
Match: ODP2_ZYMMO (Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex OS=Zymomonas mobilis GN=pdhC PE=3 SV=2)

HSP 1 Score: 94.3597 bits (233), Expect = 9.132e-19
Identity = 43/81 (53.09%), Postives = 60/81 (74.07%), Query Frame = 2
Query:  542 EIGMPSLSPTMQEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVEEEEDI 784
            E+ MP+LSPTM EG +A+WL KEGD V  G++L E+ETDKA +E E ++ G +AKI+  +GS+ I VG+VIA+  E  ED+
Sbjct:    4 EVKMPALSPTMTEGTLAKWLVKEGDAVKAGDILAEIETDKAIMEFETVDAGIIAKILVPEGSENIAVGQVIAVMAEAGEDV 84          
BLAST of FC877828 vs. ExPASy Swiss-Prot
Match: ODPB_RHIME (Pyruvate dehydrogenase E1 component subunit beta OS=Rhizobium meliloti GN=pdhB PE=3 SV=2)

HSP 1 Score: 92.8189 bits (229), Expect = 2.657e-18
Identity = 44/92 (47.83%), Postives = 67/92 (72.83%), Query Frame = 2
Query:  542 EIGMPSLSPTMQEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVEEEE---DIPKFKDYSP 808
            EI MP+LSPTM+EG +++WLK EGDKVS G+V+ E+ETDKAT+E+E ++EG + K++   G++ +KV   IA+ +++ E   DI   K  +P
Sbjct:    4 EILMPALSPTMEEGTLSKWLKNEGDKVSSGDVIAEIETDKATMEVEAVDEGTIGKLLIAAGTEGVKVNTPIAVLLQDGEAASDIDSMKTEAP 95          
BLAST of FC877828 vs. ExPASy Swiss-Prot
Match: ODPB_ZYMMO (Pyruvate dehydrogenase E1 component subunit beta OS=Zymomonas mobilis GN=pdhB PE=3 SV=2)

HSP 1 Score: 90.5077 bits (223), Expect = 1.319e-17
Identity = 40/81 (49.38%), Postives = 57/81 (70.37%), Query Frame = 2
Query:  542 EIGMPSLSPTMQEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVEEEEDI 784
            E+ MP+LSPTM+EG + RWL KEGD +  GE+L E+ETDKA +E E ++EG + KI+  +GS+ +KVG  IA    +  D+
Sbjct:    4 ELKMPALSPTMEEGTLTRWLVKEGDSIKAGEILAEIETDKAIMEFEAVDEGVITKILIPEGSENVKVGTAIAYLGTDANDV 84          
BLAST of FC877828 vs. ExPASy Swiss-Prot
Match: ODPX_YEAST (Pyruvate dehydrogenase complex protein X component, mitochondrial OS=Saccharomyces cerevisiae GN=PDX1 PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 6.544e-17
Identity = 40/106 (37.74%), Postives = 69/106 (65.09%), Query Frame = 2
Query:  479 ACSKVHLKRGFSSDSGLPPHQEIGMPSLSPTMQEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVEEEEDIPKFK 796
            +C++   K  + + + L   +   MP++SPTM++G I  W  K G+  S G+V+ EVETDK+ +++E +++G LAKI+K +GSK++ VGE IA   + ++D+   K
Sbjct:   13 SCTRYLTKCNYHASAKLLAVKTFSMPAMSPTMEKGGIVSWKYKVGEPFSAGDVILEVETDKSQIDVEALDDGKLAKILKDEGSKDVDVGEPIAYIADVDDDLATIK 118          
BLAST of FC877828 vs. ExPASy Swiss-Prot
Match: ODPX_SCHPO (Probable pyruvate dehydrogenase protein X component, mitochondrial OS=Schizosaccharomyces pombe GN=SPCC1259.09c PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 8.000e-15
Identity = 40/78 (51.28%), Postives = 56/78 (71.79%), Query Frame = 2
Query:  551 MPSLSPTMQEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVEEEEDI 784
            MP+LSPTM+EGNI +W  KEGD    G++L EVETDKAT+++E  + G LAK++   GS  I VG+ IAI  + E+++
Sbjct:   40 MPALSPTMEEGNITKWHFKEGDSFKSGDILLEVETDKATMDVEVQDNGILAKVLIEKGS-NIPVGKNIAIVADAEDNL 116          
BLAST of FC877828 vs. ExPASy Swiss-Prot
Match: ODO2_BACSU (Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex OS=Bacillus subtilis GN=odhB PE=3 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 9.153e-11
Identity = 34/76 (44.74%), Postives = 48/76 (63.16%), Query Frame = 2
Query:  542 EIGMPSLSPTMQEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVE 769
            EI +P L+ ++ EG IA+WLK+ GD V  GE L E+ETDK  VE+   E G L +++K D    ++VGE+I    E
Sbjct:    3 EIKVPELAESISEGTIAQWLKQPGDYVEQGEYLLELETDKVNVELTAEESGVLQEVLK-DSGDTVQVGEIIGTISE 77          
The following BLAST results are available for this feature:
BLAST of FC877828 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
ODP2_ZYMMO9.132e-1953.09Dihydrolipoyllysine-residue acetyltransferase comp... [more]
ODPB_RHIME2.657e-1847.83Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_ZYMMO1.319e-1749.38Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPX_YEAST6.544e-1737.74Pyruvate dehydrogenase complex protein X component... [more]
ODPX_SCHPO8.000e-1551.28Probable pyruvate dehydrogenase protein X componen... [more]
ODO2_BACSU9.153e-1144.74Dihydrolipoyllysine-residue succinyltransferase co... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA65DB05RM1 IVIA1 Citrus clementina cDNA clone IC0AAA65DB05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877828 ID=FC877828; Name=FC877828; organism=Citrus clementina; type=EST; length=866bp
AAAGTCCGAACCCTAATAAATTTCACGTTTTTAACCAAACTAAATCAGAC
CCTCTTTGATTCCTACTCTGTTCGTTCATCTCTCACTAAAAAAGCAATTT
AAAAAAAAAAAAACTATTTTTCTTGCTGAATTTTCATTGCTCTTTTTCTG
TTGATTTTTTTAGTGGTTTTTGGAAATATTAGTCATGGCGTATGCATCTC
ACATCATCAATCACTCTAAAAAGTTGAAGAATGTTTCAAATTTGCTGTGG
CATGAGAATGCTGTTTTGGTTCGTTGGTTTTCAAATGATGCTGTTAGTAG
CAGGGATGATCTTCTAAAGATTCATCGCCATGTATATGTGCCTGTGGAGA
GTGAAAGAGTCATTAATTCATCCGCCATTAGCTCTGTATCATCAGTAGGT
GTATTTAAGAAAAAATTTTGTAGTGTGGCAAGAAAAGCCGGAAGTCCCAT
TGCTGGATCTTTCCTCAACAGAGGATTTGCATGTTCAAAAGTACACTTGA
AGAGAGGATTTTCGTCAGATTCAGGTCTTCCTCCACACCAGGAGATTGGA
ATGCCCTCCCTTTCACCCACAATGCAAGAGGGTAATATTGCTCGGTGGTT
GAAGAAAGAGGGCGACAAGGTGTCTCCCGGTGAAGTACTCTGTGAAGTTG
AAACTGATAAAGCAACTGTTGAGATGGAATGTATGGAGGAAGGTTATCTT
GCCAAGATAGTAAAAGGAGATGGGTCAAAAGAAATTAAAGTTGGTGAGGT
TATTGCTATCACTGTTGAAGAAGAGGAAGATATTCCGAAGTTTAAAGATT
ACAGTCCTTCAGTGTCTGATGCTGGTGCTGCTCCAGCTAAAGAGCCTTCT
CCTCCTCCCCCTCCAA
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