FC877833

Overview
NameFC877833
Unique NameFC877833
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length844
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC877833 vs. ExPASy Swiss-Prot
Match: RAE1L_DANRE (mRNA export factor OS=Danio rerio GN=rae1 PE=2 SV=2)

HSP 1 Score: 132.88 bits (333), Expect = 2.223e-30
Identity = 87/239 (36.40%), Postives = 125/239 (52.30%), Query Frame = 2
Query:  167 PTSGRELGNPPSDGISNLRFSNHS---DHLLVSSWDKSVRLYDASAN---VLRGEFMHGGPVLDCCFHDDSSG-FSASADHTVRRLVFSHGKEDILGKHDAPVRCIEYSYAAGQ--VITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPN----GTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCH 844
            P    E+ +PP D IS L FS  +   + L+  SW   VR ++   N   V + + MH GPVLD C+ DD S  F+AS D T +    +  +   + +H+ P+R I +  A     ++TGSWDK+LK WD R  +        +   PER Y   +V    VVATA R + VY L N     +R ES LK+Q RCV  + +     TG+AL S+EGRVA+ + +    ++   + FKCH
Sbjct:   28 PMKDVEVTSPPDDSISCLAFSPPTMPGNFLIGGSWANDVRCWEVQDNGQTVPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLNSNQAIQIAQHEGPIRTIHWIKAPNYSCIMTGSWDKTLKFWDTRSPNPMM-----SLQMPERCYCADVVYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQSKPTGFALGSIEGRVAIHYINPPNPAK-DNFTFKCH 260          
BLAST of FC877833 vs. ExPASy Swiss-Prot
Match: RAEL1_PONAB (mRNA export factor OS=Pongo abelii GN=RAE1 PE=2 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 3.791e-30
Identity = 87/239 (36.40%), Postives = 124/239 (51.88%), Query Frame = 2
Query:  167 PTSGRELGNPPSDGISNLRFSNHS---DHLLVSSWDKSVRLY---DASANVLRGEFMHGGPVLDCCFHDDSSG-FSASADHTVRRLVFSHGKEDILGKHDAPVRCIEYSYAAGQ--VITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPN----GTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCH 844
            P    E+ + P D I  L FS  +   + L+  SW   VR +   D+   + + + MH GPVLD C+ DD S  F+AS D T +    S  +   + +HDAPV+ I +  A     V+TGSWDK+LK WD R ++            PER Y   ++    VVATA R + VY L N     +R ES LK+Q RCV  + +     TG+AL S+EGRVA+ + +    ++   + FKCH
Sbjct:   28 PMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMM-----VLQLPERCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAK-DNFTFKCH 260          
BLAST of FC877833 vs. ExPASy Swiss-Prot
Match: RAE1L_HUMAN (mRNA export factor OS=Homo sapiens GN=RAE1 PE=1 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 3.791e-30
Identity = 87/239 (36.40%), Postives = 124/239 (51.88%), Query Frame = 2
Query:  167 PTSGRELGNPPSDGISNLRFSNHS---DHLLVSSWDKSVRLY---DASANVLRGEFMHGGPVLDCCFHDDSSG-FSASADHTVRRLVFSHGKEDILGKHDAPVRCIEYSYAAGQ--VITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPN----GTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCH 844
            P    E+ + P D I  L FS  +   + L+  SW   VR +   D+   + + + MH GPVLD C+ DD S  F+AS D T +    S  +   + +HDAPV+ I +  A     V+TGSWDK+LK WD R ++            PER Y   ++    VVATA R + VY L N     +R ES LK+Q RCV  + +     TG+AL S+EGRVA+ + +    ++   + FKCH
Sbjct:   28 PMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMM-----VLQLPERCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAK-DNFTFKCH 260          
BLAST of FC877833 vs. ExPASy Swiss-Prot
Match: RAEL1_PIG (mRNA export factor OS=Sus scrofa GN=RAE1 PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 8.446e-30
Identity = 86/239 (35.98%), Postives = 124/239 (51.88%), Query Frame = 2
Query:  167 PTSGRELGNPPSDGISNLRFSNHS---DHLLVSSWDKSVRLY---DASANVLRGEFMHGGPVLDCCFHDDSSG-FSASADHTVRRLVFSHGKEDILGKHDAPVRCIEYSYAAGQ--VITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPN----GTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCH 844
            P    E+ + P D I  L FS  +   + L+  SW   VR +   D+   + + + MH GPVLD C+ DD S  F+AS D T +    +  +   + +HDAPV+ I +  A     V+TGSWDK+LK WD R ++            PER Y   ++    VVATA R + VY L N     +R ES LK+Q RCV  + +     TG+AL S+EGRVA+ + +    ++   + FKCH
Sbjct:   28 PMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLNSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMM-----VLQLPERCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAK-DNFTFKCH 260          
BLAST of FC877833 vs. ExPASy Swiss-Prot
Match: RAE1L_RAT (mRNA export factor OS=Rattus norvegicus GN=Rae1 PE=2 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 8.446e-30
Identity = 86/239 (35.98%), Postives = 124/239 (51.88%), Query Frame = 2
Query:  167 PTSGRELGNPPSDGISNLRFSNHS---DHLLVSSWDKSVRLY---DASANVLRGEFMHGGPVLDCCFHDDSSG-FSASADHTVRRLVFSHGKEDILGKHDAPVRCIEYSYAAGQ--VITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPN----GTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCH 844
            P    E+ + P D I  L FS  +   + L+  SW   VR +   D+   + + + MH GPVLD C+ DD S  F+AS D T +    +  +   + +HDAPV+ I +  A     V+TGSWDK+LK WD R ++            PER Y   ++    VVATA R + VY L N     +R ES LK+Q RCV  + +     TG+AL S+EGRVA+ + +    ++   + FKCH
Sbjct:   28 PMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLNSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMM-----VLQLPERCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAK-DNFTFKCH 260          
BLAST of FC877833 vs. ExPASy Swiss-Prot
Match: RAE1L_MOUSE (mRNA export factor OS=Mus musculus GN=Rae1 PE=1 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 8.446e-30
Identity = 86/239 (35.98%), Postives = 124/239 (51.88%), Query Frame = 2
Query:  167 PTSGRELGNPPSDGISNLRFSNHS---DHLLVSSWDKSVRLY---DASANVLRGEFMHGGPVLDCCFHDDSSG-FSASADHTVRRLVFSHGKEDILGKHDAPVRCIEYSYAAGQ--VITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPN----GTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCH 844
            P    E+ + P D I  L FS  +   + L+  SW   VR +   D+   + + + MH GPVLD C+ DD S  F+AS D T +    +  +   + +HDAPV+ I +  A     V+TGSWDK+LK WD R ++            PER Y   ++    VVATA R + VY L N     +R ES LK+Q RCV  + +     TG+AL S+EGRVA+ + +    ++   + FKCH
Sbjct:   28 PMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLNSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMM-----VLQLPERCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAK-DNFTFKCH 260          
BLAST of FC877833 vs. ExPASy Swiss-Prot
Match: RAE1L_BOVIN (mRNA export factor OS=Bos taurus GN=RAE1 PE=2 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 1.103e-29
Identity = 85/239 (35.56%), Postives = 124/239 (51.88%), Query Frame = 2
Query:  167 PTSGRELGNPPSDGISNLRFSNHS---DHLLVSSWDKSVRLY---DASANVLRGEFMHGGPVLDCCFHDDSSG-FSASADHTVRRLVFSHGKEDILGKHDAPVRCIEYSYAAGQ--VITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPN----GTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCH 844
            P    E+ + P D I  L FS  +   + L+  SW   VR +   D+   + + + MH GPVLD C+ DD S  F+AS D T +    +  +   + +HDAPV+ + +  A     V+TGSWDK+LK WD R ++            PER Y   ++    VVATA R + VY L N     +R ES LK+Q RCV  + +     TG+AL S+EGRVA+ + +    ++   + FKCH
Sbjct:   28 PMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLNSNQAIQIAQHDAPVKTVHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMM-----VLQLPERCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAK-DNFTFKCH 260          
BLAST of FC877833 vs. ExPASy Swiss-Prot
Match: BUB3_SCHPO (Mitotic checkpoint protein bub3 OS=Schizosaccharomyces pombe GN=bub3 PE=1 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.882e-29
Identity = 77/216 (35.65%), Postives = 114/216 (52.78%), Query Frame = 2
Query:  203 DGISNLRFS-NHSDHLLVSSWDKSVRLYDASANV-LRGEFMHGGPVLDCCFHDDSSGFSASADHTVRRLVFSHGKEDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCH 844
            DGIS++ FS +  + L+   WD S+  Y  S N  L G++    P+L   + D+ +    + D TV  L  +    + LG H   V CI         I+GSWDKS + WD R     E   +G     +++++ S   N LV+  + R   VYD+RN+  P QRR SS KY TR V C  N  G+  SS+EGR ++E+ + S+ +Q+K + FKCH
Sbjct:   13 DGISSVIFSPSVKNELIAGCWDGSLLHYQISENPELLGKYDLSSPILSLEYTDEKTALVGNLDGTVTTLDLNTRNHEFLGNHGKGVSCISKLRLENCFISGSWDKSFRVWDVRVKQPVEGQDIG-----KKIFASSSRDNILVLGCSERENLVYDIRNLKLPFQRRPSSFKYMTRSVCCNQNFEGFVSSSIEGRTSVEYINPSQEAQSKNFTFKCH 223          
BLAST of FC877833 vs. ExPASy Swiss-Prot
Match: NPP17_CAEEL (Nucleoporin-17 OS=Caenorhabditis elegans GN=npp-17 PE=1 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.395e-24
Identity = 76/230 (33.04%), Postives = 118/230 (51.30%), Query Frame = 2
Query:  197 PSDGISNLRFS---NHSDHLLVSSWDKSVRLYDAS-ANVLRGEFMHG--GPVLDCCFHDDSSG-FSASADHTVRRLVFSHGKEDILGKHDAPVRCIEYSYAAGQ--VITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCY-----PNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCH 844
            P D I  ++FS        L   SWD ++R++  + AN   G+       P+LD  + +DSS  F A AD   R    +  +  ++G HD PV+   +        ++TGS+DK+L+ WD +    Q  T +     PERVY+  ++    VVA A +H+ VY+L N     +  ES LK+Q RC+  +      N  G+AL S+EGRVA+++ D+  A+    + FKCH
Sbjct:   41 PEDTIQVIKFSPTPQDKPMLACGSWDGTIRVWMFNDANTFEGKAQQNIPAPILDIAWIEDSSKIFIACADKEARLWDLASNQVAVVGTHDGPVKTCHWINGNNYQCLMTGSFDKTLRFWDMKNLPNQ--TQMAQIQLPERVYAADVLYPMAVVALANKHIKVYNLENGPTEVKDIESQLKFQIRCISIFKDKSNQNPAGFALGSIEGRVAVQYVDV--ANPKDNFTFKCH 266          
BLAST of FC877833 vs. ExPASy Swiss-Prot
Match: BUB3_YEAST (Cell cycle arrest protein BUB3 OS=Saccharomyces cerevisiae GN=BUB3 PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 6.081e-12
Identity = 64/237 (27.00%), Postives = 105/237 (44.30%), Query Frame = 2
Query:  182 ELGNPPSDGISNLRFSNHSDHLLVSSWDKSVRLYD---ASANV-LRGEFMHGGPVLDCCFHD--DSSGFSASADHTVRR--LVFSHGKEDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPR----GASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYDLRNMSQPEQR-RESSLKYQTRCVRCYPNGT-GYALSSVEGRVAMEFFD--LSEASQAKKYAFKCH 844
            ++   P D IS+++       LL++SWD S+ +Y     + NV L     +  P+L C F D  D   +  +    + +  L+ S   + +         C    Y   ++I  SWD  ++  DPR    G    +           +++++    +RL+V      V  + L           ES LKYQ R V   P    GYA SS++GRVA+EFFD    + + +K++AF+CH
Sbjct:    5 QIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCH 241          
The following BLAST results are available for this feature:
BLAST of FC877833 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
RAE1L_DANRE2.223e-3036.40mRNA export factor OS=Danio rerio GN=rae1 PE=2 SV=... [more]
RAEL1_PONAB3.791e-3036.40mRNA export factor OS=Pongo abelii GN=RAE1 PE=2 SV... [more]
RAE1L_HUMAN3.791e-3036.40mRNA export factor OS=Homo sapiens GN=RAE1 PE=1 SV... [more]
RAEL1_PIG8.446e-3035.98mRNA export factor OS=Sus scrofa GN=RAE1 PE=3 SV=1[more]
RAE1L_RAT8.446e-3035.98mRNA export factor OS=Rattus norvegicus GN=Rae1 PE... [more]
RAE1L_MOUSE8.446e-3035.98mRNA export factor OS=Mus musculus GN=Rae1 PE=1 SV... [more]
RAE1L_BOVIN1.103e-2935.56mRNA export factor OS=Bos taurus GN=RAE1 PE=2 SV=1[more]
BUB3_SCHPO1.882e-2935.65Mitotic checkpoint protein bub3 OS=Schizosaccharom... [more]
NPP17_CAEEL1.395e-2433.04Nucleoporin-17 OS=Caenorhabditis elegans GN=npp-17... [more]
BUB3_YEAST6.081e-1227.00Cell cycle arrest protein BUB3 OS=Saccharomyces ce... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA65DB07RM1 IVIA1 Citrus clementina cDNA clone IC0AAA65DB07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877833 ID=FC877833; Name=FC877833; organism=Citrus clementina; type=EST; length=844bp
CCACCTAGGAGTGGCAGCAGCAGCAGCGGCCACTCGTTCAATTTTCAAAC
CTCCTTTCCCCCCTCAGCCCCTCTCTCTCGCTTAAATCACTAACAGAACA
CGTCCCTAAACTCCTCTTCTCAATTCCCCCCCAACCAATCACGGCATGAC
AGCTGTCCACCCGCCTCCTACCTCCGGTCGCGAGCTCGGGAACCCTCCAA
GCGACGGGATCTCGAACCTTCGATTCTCCAACCACAGCGATCACCTCCTC
GTCTCCTCTTGGGATAAGAGCGTGAGATTGTACGATGCGAGCGCGAATGT
GCTCCGAGGAGAGTTCATGCACGGTGGGCCCGTGCTCGATTGCTGCTTCC
ACGACGATTCTTCCGGTTTCAGTGCCAGCGCCGATCACACTGTTAGACGG
CTAGTATTCAGCCATGGAAAAGAGGATATCCTAGGGAAACATGATGCACC
TGTGCGTTGTATTGAGTACTCGTATGCAGCAGGGCAAGTGATTACTGGTA
GTTGGGACAAATCTCTCAAGTGTTGGGATCCTAGAGGAGCAAGTGGACAG
GAGCGAACCCTTGTTGGAACATACCCTCAGCCTGAGCGTGTCTACTCCCT
ATCTCTTGTTGGAAACCGTCTGGTGGTGGCCACTGCAGGAAGACATGTAA
ATGTCTATGATTTACGAAACATGTCTCAGCCCGAGCAAAGGAGAGAATCT
TCTTTAAAGTATCAGACTAGATGTGTGCGTTGTTATCCAAATGGAACCGG
ATATGCTCTGAGTTCTGTTGAAGGACGGGTTGCTATGGAGTTTTTTGATC
TCTCAGAAGCTAGTCAAGCCAAAAAATATGCATTTAAGTGCCAC
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