FC877833
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC877833 vs. ExPASy Swiss-Prot
Match: RAE1L_DANRE (mRNA export factor OS=Danio rerio GN=rae1 PE=2 SV=2) HSP 1 Score: 132.88 bits (333), Expect = 2.223e-30 Identity = 87/239 (36.40%), Postives = 125/239 (52.30%), Query Frame = 2 Query: 167 PTSGRELGNPPSDGISNLRFSNHS---DHLLVSSWDKSVRLYDASAN---VLRGEFMHGGPVLDCCFHDDSSG-FSASADHTVRRLVFSHGKEDILGKHDAPVRCIEYSYAAGQ--VITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPN----GTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCH 844 P E+ +PP D IS L FS + + L+ SW VR ++ N V + + MH GPVLD C+ DD S F+AS D T + + + + +H+ P+R I + A ++TGSWDK+LK WD R + + PER Y +V VVATA R + VY L N +R ES LK+Q RCV + + TG+AL S+EGRVA+ + + ++ + FKCH Sbjct: 28 PMKDVEVTSPPDDSISCLAFSPPTMPGNFLIGGSWANDVRCWEVQDNGQTVPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLNSNQAIQIAQHEGPIRTIHWIKAPNYSCIMTGSWDKTLKFWDTRSPNPMM-----SLQMPERCYCADVVYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQSKPTGFALGSIEGRVAIHYINPPNPAK-DNFTFKCH 260
BLAST of FC877833 vs. ExPASy Swiss-Prot
Match: RAEL1_PONAB (mRNA export factor OS=Pongo abelii GN=RAE1 PE=2 SV=1) HSP 1 Score: 132.109 bits (331), Expect = 3.791e-30 Identity = 87/239 (36.40%), Postives = 124/239 (51.88%), Query Frame = 2 Query: 167 PTSGRELGNPPSDGISNLRFSNHS---DHLLVSSWDKSVRLY---DASANVLRGEFMHGGPVLDCCFHDDSSG-FSASADHTVRRLVFSHGKEDILGKHDAPVRCIEYSYAAGQ--VITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPN----GTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCH 844 P E+ + P D I L FS + + L+ SW VR + D+ + + + MH GPVLD C+ DD S F+AS D T + S + + +HDAPV+ I + A V+TGSWDK+LK WD R ++ PER Y ++ VVATA R + VY L N +R ES LK+Q RCV + + TG+AL S+EGRVA+ + + ++ + FKCH Sbjct: 28 PMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMM-----VLQLPERCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAK-DNFTFKCH 260
BLAST of FC877833 vs. ExPASy Swiss-Prot
Match: RAE1L_HUMAN (mRNA export factor OS=Homo sapiens GN=RAE1 PE=1 SV=1) HSP 1 Score: 132.109 bits (331), Expect = 3.791e-30 Identity = 87/239 (36.40%), Postives = 124/239 (51.88%), Query Frame = 2 Query: 167 PTSGRELGNPPSDGISNLRFSNHS---DHLLVSSWDKSVRLY---DASANVLRGEFMHGGPVLDCCFHDDSSG-FSASADHTVRRLVFSHGKEDILGKHDAPVRCIEYSYAAGQ--VITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPN----GTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCH 844 P E+ + P D I L FS + + L+ SW VR + D+ + + + MH GPVLD C+ DD S F+AS D T + S + + +HDAPV+ I + A V+TGSWDK+LK WD R ++ PER Y ++ VVATA R + VY L N +R ES LK+Q RCV + + TG+AL S+EGRVA+ + + ++ + FKCH Sbjct: 28 PMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMM-----VLQLPERCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAK-DNFTFKCH 260
BLAST of FC877833 vs. ExPASy Swiss-Prot
Match: RAEL1_PIG (mRNA export factor OS=Sus scrofa GN=RAE1 PE=3 SV=1) HSP 1 Score: 130.954 bits (328), Expect = 8.446e-30 Identity = 86/239 (35.98%), Postives = 124/239 (51.88%), Query Frame = 2 Query: 167 PTSGRELGNPPSDGISNLRFSNHS---DHLLVSSWDKSVRLY---DASANVLRGEFMHGGPVLDCCFHDDSSG-FSASADHTVRRLVFSHGKEDILGKHDAPVRCIEYSYAAGQ--VITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPN----GTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCH 844 P E+ + P D I L FS + + L+ SW VR + D+ + + + MH GPVLD C+ DD S F+AS D T + + + + +HDAPV+ I + A V+TGSWDK+LK WD R ++ PER Y ++ VVATA R + VY L N +R ES LK+Q RCV + + TG+AL S+EGRVA+ + + ++ + FKCH Sbjct: 28 PMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLNSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMM-----VLQLPERCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAK-DNFTFKCH 260
BLAST of FC877833 vs. ExPASy Swiss-Prot
Match: RAE1L_RAT (mRNA export factor OS=Rattus norvegicus GN=Rae1 PE=2 SV=1) HSP 1 Score: 130.954 bits (328), Expect = 8.446e-30 Identity = 86/239 (35.98%), Postives = 124/239 (51.88%), Query Frame = 2 Query: 167 PTSGRELGNPPSDGISNLRFSNHS---DHLLVSSWDKSVRLY---DASANVLRGEFMHGGPVLDCCFHDDSSG-FSASADHTVRRLVFSHGKEDILGKHDAPVRCIEYSYAAGQ--VITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPN----GTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCH 844 P E+ + P D I L FS + + L+ SW VR + D+ + + + MH GPVLD C+ DD S F+AS D T + + + + +HDAPV+ I + A V+TGSWDK+LK WD R ++ PER Y ++ VVATA R + VY L N +R ES LK+Q RCV + + TG+AL S+EGRVA+ + + ++ + FKCH Sbjct: 28 PMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLNSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMM-----VLQLPERCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAK-DNFTFKCH 260
BLAST of FC877833 vs. ExPASy Swiss-Prot
Match: RAE1L_MOUSE (mRNA export factor OS=Mus musculus GN=Rae1 PE=1 SV=1) HSP 1 Score: 130.954 bits (328), Expect = 8.446e-30 Identity = 86/239 (35.98%), Postives = 124/239 (51.88%), Query Frame = 2 Query: 167 PTSGRELGNPPSDGISNLRFSNHS---DHLLVSSWDKSVRLY---DASANVLRGEFMHGGPVLDCCFHDDSSG-FSASADHTVRRLVFSHGKEDILGKHDAPVRCIEYSYAAGQ--VITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPN----GTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCH 844 P E+ + P D I L FS + + L+ SW VR + D+ + + + MH GPVLD C+ DD S F+AS D T + + + + +HDAPV+ I + A V+TGSWDK+LK WD R ++ PER Y ++ VVATA R + VY L N +R ES LK+Q RCV + + TG+AL S+EGRVA+ + + ++ + FKCH Sbjct: 28 PMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLNSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMM-----VLQLPERCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAK-DNFTFKCH 260
BLAST of FC877833 vs. ExPASy Swiss-Prot
Match: RAE1L_BOVIN (mRNA export factor OS=Bos taurus GN=RAE1 PE=2 SV=1) HSP 1 Score: 130.568 bits (327), Expect = 1.103e-29 Identity = 85/239 (35.56%), Postives = 124/239 (51.88%), Query Frame = 2 Query: 167 PTSGRELGNPPSDGISNLRFSNHS---DHLLVSSWDKSVRLY---DASANVLRGEFMHGGPVLDCCFHDDSSG-FSASADHTVRRLVFSHGKEDILGKHDAPVRCIEYSYAAGQ--VITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPN----GTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCH 844 P E+ + P D I L FS + + L+ SW VR + D+ + + + MH GPVLD C+ DD S F+AS D T + + + + +HDAPV+ + + A V+TGSWDK+LK WD R ++ PER Y ++ VVATA R + VY L N +R ES LK+Q RCV + + TG+AL S+EGRVA+ + + ++ + FKCH Sbjct: 28 PMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLNSNQAIQIAQHDAPVKTVHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMM-----VLQLPERCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAK-DNFTFKCH 260
BLAST of FC877833 vs. ExPASy Swiss-Prot
Match: BUB3_SCHPO (Mitotic checkpoint protein bub3 OS=Schizosaccharomyces pombe GN=bub3 PE=1 SV=1) HSP 1 Score: 129.798 bits (325), Expect = 1.882e-29 Identity = 77/216 (35.65%), Postives = 114/216 (52.78%), Query Frame = 2 Query: 203 DGISNLRFS-NHSDHLLVSSWDKSVRLYDASANV-LRGEFMHGGPVLDCCFHDDSSGFSASADHTVRRLVFSHGKEDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCH 844 DGIS++ FS + + L+ WD S+ Y S N L G++ P+L + D+ + + D TV L + + LG H V CI I+GSWDKS + WD R E +G +++++ S N LV+ + R VYD+RN+ P QRR SS KY TR V C N G+ SS+EGR ++E+ + S+ +Q+K + FKCH Sbjct: 13 DGISSVIFSPSVKNELIAGCWDGSLLHYQISENPELLGKYDLSSPILSLEYTDEKTALVGNLDGTVTTLDLNTRNHEFLGNHGKGVSCISKLRLENCFISGSWDKSFRVWDVRVKQPVEGQDIG-----KKIFASSSRDNILVLGCSERENLVYDIRNLKLPFQRRPSSFKYMTRSVCCNQNFEGFVSSSIEGRTSVEYINPSQEAQSKNFTFKCH 223
BLAST of FC877833 vs. ExPASy Swiss-Prot
Match: NPP17_CAEEL (Nucleoporin-17 OS=Caenorhabditis elegans GN=npp-17 PE=1 SV=1) HSP 1 Score: 113.62 bits (283), Expect = 1.395e-24 Identity = 76/230 (33.04%), Postives = 118/230 (51.30%), Query Frame = 2 Query: 197 PSDGISNLRFS---NHSDHLLVSSWDKSVRLYDAS-ANVLRGEFMHG--GPVLDCCFHDDSSG-FSASADHTVRRLVFSHGKEDILGKHDAPVRCIEYSYAAGQ--VITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCY-----PNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCH 844 P D I ++FS L SWD ++R++ + AN G+ P+LD + +DSS F A AD R + + ++G HD PV+ + ++TGS+DK+L+ WD + Q T + PERVY+ ++ VVA A +H+ VY+L N + ES LK+Q RC+ + N G+AL S+EGRVA+++ D+ A+ + FKCH Sbjct: 41 PEDTIQVIKFSPTPQDKPMLACGSWDGTIRVWMFNDANTFEGKAQQNIPAPILDIAWIEDSSKIFIACADKEARLWDLASNQVAVVGTHDGPVKTCHWINGNNYQCLMTGSFDKTLRFWDMKNLPNQ--TQMAQIQLPERVYAADVLYPMAVVALANKHIKVYNLENGPTEVKDIESQLKFQIRCISIFKDKSNQNPAGFALGSIEGRVAVQYVDV--ANPKDNFTFKCH 266
BLAST of FC877833 vs. ExPASy Swiss-Prot
Match: BUB3_YEAST (Cell cycle arrest protein BUB3 OS=Saccharomyces cerevisiae GN=BUB3 PE=1 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 6.081e-12 Identity = 64/237 (27.00%), Postives = 105/237 (44.30%), Query Frame = 2 Query: 182 ELGNPPSDGISNLRFSNHSDHLLVSSWDKSVRLYD---ASANV-LRGEFMHGGPVLDCCFHD--DSSGFSASADHTVRR--LVFSHGKEDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPR----GASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYDLRNMSQPEQR-RESSLKYQTRCVRCYPNGT-GYALSSVEGRVAMEFFD--LSEASQAKKYAFKCH 844 ++ P D IS+++ LL++SWD S+ +Y + NV L + P+L C F D D + + + + L+ S + + C Y ++I SWD ++ DPR G + +++++ +RL+V V + L ES LKYQ R V P GYA SS++GRVA+EFFD + + +K++AF+CH Sbjct: 5 QIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCH 241 The following BLAST results are available for this feature:
BLAST of FC877833 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 20
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >FC877833 ID=FC877833; Name=FC877833; organism=Citrus clementina; type=EST; length=844bpback to top |