FC877835

Overview
NameFC877835
Unique NameFC877835
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length936
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC877835 vs. ExPASy Swiss-Prot
Match: PME_BRANA (Probable pectinesterase/pectinesterase inhibitor OS=Brassica napus GN=BP19 PE=2 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 5.441e-36
Identity = 103/314 (32.80%), Postives = 146/314 (46.50%), Query Frame = 1
Query:   52 DELKILVSAAMTNQETCLDGFSHERADKKIREELMEGQM------HVFHMCSNALAM----IKNMTDGDIGKDIVDHYSKARRLDDETKWPEWLSAGDRRLLQXXXXXXXXXXXXXG-------------------SGNYLTXXXXXXXXPEGSSRRYIIRIKAGEYRENVEVPKKKINLMFXXXXXXXXXXXXSRNV--VDGSTTFNSATVAVVGDGFLARDITFQNTAGPSKHQAVALRVGSDLSAFYRCDMLAYQDTLYVHSLRQFYTSCIIAGTVDFIFGNAAAVFQNCDIHARRPNPNQRNMVTAQGRD 900
            D+LK  ++     Q  C+D        K + E +   ++       +FH  + A++     + +M  G++G+           LD +   P+W S  DR+L+              G                   SG + T        PE +  R II IKAG Y+E V +PKK  N+               R+V    G+TT  S TV V  +GF+A+ I FQNTAGP  HQAVA RV  D +  + C    YQDTLYV++ RQFY + +++GTVDFIFG +A V QN  I  R+ +P Q N VTA G +
Sbjct:  145 DQLKQWLTGVFNYQTDCIDDIEESELRKVMGEGIAHSKILSSNAIDIFHALTTAMSQMNVKVDDMKKGNLGETPAPDRDLLEDLDQKGL-PKWHSDKDRKLMAQAGRPGAPADEGIGEGGGGGGKIKPTHVVAKDGSGQFKTISEAVKACPEKNPGRCIIYIKAGVYKEQVTIPKKVNNVFMFGDGATQTIITFDRSVGLSPGTTTSLSGTVQVESEGFMAKWIGFQNTAGPLGHQAVAFRVNGDRAVIFNCRFDGYQDTLYVNNGRQFYRNIVVSGTVDFIFGKSATVIQNSLILCRKGSPGQTNHVTADGNE 457          
BLAST of FC877835 vs. ExPASy Swiss-Prot
Match: PME54_ARATH (Probable pectinesterase/pectinesterase inhibitor 54 OS=Arabidopsis thaliana GN=PME54 PE=2 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 3.527e-35
Identity = 98/297 (33.00%), Postives = 141/297 (47.47%), Query Frame = 1
Query:   55 ELKILVSAAMTNQETCLDGF--SHERADKKIREELMEGQMHVFHMCSNALAMIKNMTDGDIGKDIVDHYSKARRLDDETKWPEWLSAGDRRLLQXXXXXXXXXXXXXGSGNYLTXXXXXXXXPEGSSRRYIIRIK--AGEYRENVEVPKKKINLMFXXXXXXXXXXXXSRNVVDGSTTFNSATVAVVGDGFLARDITFQNTAGPSKHQAVALRVGSDLSAFYRCDMLAYQDTLYVHSLRQFYTSCIIAGTVDFIFGNAAAVFQNCDIHARRPN-PNQRNMVTAQGRDDPNQNTGIVI 930
            +++  +SAAMT Q+ C D    S   +       + +   H+  + SN+L ++  +      K               T  P W++AG+RRLL                               G +R +++  K  +G+YR  +E                        +   G++  ++AT+ V GDGF+ARDI  +N AGP  HQA+AL + SD S  YRC +  YQDTLY  +LRQFY  C I GT+DFIFGNAAAVFQ+C+I  RRP+     N++ A GR D  QNTG  +
Sbjct:  142 DVQTWLSAAMTFQQACKDSILDSGGSSSASAISHISQKMDHLSRLVSNSLTLVDTIMKNPKPKT------------KSTALPRWVTAGERRLLV------------------------------GRARAHVVVAKDGSGDYRTVMEAVTAA-----HGNGKDLTVIVGDDSATGGTSVPDTATMTVTGDGFIARDIGIKNIAGPRGHQAIALSITSDQSVLYRCSISGYQDTLYAAALRQFYRECDIYGTIDFIFGNAAAVFQSCNIFLRRPHGVKAYNVILANGRTDQRQNTGFAL 391          
BLAST of FC877835 vs. ExPASy Swiss-Prot
Match: PME_BRACM (Pectinesterase/pectinesterase inhibitor (Fragment) OS=Brassica campestris PE=2 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 3.899e-34
Identity = 101/313 (32.27%), Postives = 145/313 (46.33%), Query Frame = 1
Query:   52 DELKILVSAAMTNQETCLDGFSHERADKKIREELMEGQM------HVFHMCSNALAM----IKNMTDGDIGKDIVDHYSKARRLDDETKWPEWLSAGDRRLLQXXXXXXXXXXXXXG-------------------SGNYLTXXXXXXXXPEGSSRRYIIRIKAGEYRENVEVPKKKINLMFXXXXXXXXXXXXSRNV--VDGSTTFNSATVAVVGDGFLARDITFQNTAGPSKHQAVALRVGSDLSAFYRCDMLAYQDTLYVHSLRQFYTSCIIAGTVDFIFGNAAAVFQNCDIHARRPNPNQRNMVTAQGR 897
            D+LK  ++     Q  C+D        K + E +   ++       +FH  + A++     + +M  G++G+           LD +   P+W S  DR+L+              G                   SG + T        PE +  R II IKAG Y+E V +PKK  N+               R+V    G+TT  S TV V  +GF+A+ I FQNTAGP  +QAVA RV  D +  + C    YQDTLYV++ RQFY + +++GTVDFI G +A V QN  I  R+ +P Q N VTA G+
Sbjct:  132 DQLKQWLTGVFNYQTDCIDDIEESELRKVMGEGIRHSKILSSNAIDIFHALTTAMSQMNVKVDDMKKGNLGETPAPDRDLLEDLDQKGL-PKWHSDKDRKLMAQAGRPGAPADEGIGEGGGGGGKIKPTHVVAKDGSGQFKTISEAVKACPEKNPGRCIIYIKAGVYKEQVTIPKKVNNVFMFGDGATQTIITFDRSVGLSPGTTTSLSGTVQVESEGFMAKWIGFQNTAGPLGNQAVAFRVNGDRAVIFNCRFDGYQDTLYVNNGRQFYRNIVVSGTVDFINGKSATVIQNSLILCRKGSPGQTNHVTADGK 443          
BLAST of FC877835 vs. ExPASy Swiss-Prot
Match: PME31_ARATH (Pectinesterase 31 OS=Arabidopsis thaliana GN=PME31 PE=1 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 3.777e-29
Identity = 72/196 (36.73%), Postives = 105/196 (53.57%), Query Frame = 1
Query:  370 GSGNYLTXXXXXXXXPEGSSRRYIIRIKAGEYRENVEVPKKKINLMFXXXXXXXXXXXXSRNV----------VDGSTTFNSATVAVVGDGFLARDITFQNTAGPSKHQAVALRVGSDLSAFYRCDMLAYQDTLYVHSLRQFYTSCIIAGTVDFIFGNAAAVFQNCDIHARRPNPNQRNMVTAQGRDDPNQNTGIV 927
            GSG+Y +        P G++ R +IR+  G YR+ V VPK+K  + F            +             V G+ TF   +V V G+ F+A +ITF+N+A     QAVA+RV +D  AFY C  L +QDTLY+H  +Q+   C I G+VDFIFGN+ A+ ++C IH +      +  +TAQ R    ++TG V
Sbjct:   13 GSGDYCSVQDAIDSVPLGNTCRTVIRLSPGIYRQPVYVPKRKNFITFAGISPEITVLTWNNTASKIEHHQASRVIGTGTFGCGSVIVEGEDFIAENITFENSAPEGSGQAVAIRVTADRCAFYNCRFLGWQDTLYLHHGKQYLKDCYIEGSVDFIFGNSTALLEHCHIHCK-----SQGFITAQSRKSSQESTGYV 203          
BLAST of FC877835 vs. ExPASy Swiss-Prot
Match: PME57_ARATH (Putative pectinesterase 57 OS=Arabidopsis thaliana GN=PME57 PE=3 SV=2)

HSP 1 Score: 113.235 bits (282), Expect = 2.145e-24
Identity = 70/188 (37.23%), Postives = 89/188 (47.34%), Query Frame = 1
Query:  292 PEWLSAGDRRLL----QXXXXXXXXXXXXXGSGNYLTXXXXXXXXPEGSSRRYIIRIKAGEYRENVEVPKKKINLMFXXXXXXXXXXXXSRNVVDGSTTFNSATVAVVGDGFLARDITFQNTAGPSKHQAVALRVGSDLSAFYRCDMLAYQDTLYVHSLRQFYTSCIIAGTVDFIFGNAAAVFQNCDI 843
            P WLS  D++ L    +              +GNY          P+ S +R++I IK   Y E V +   K NL              + +  +   TFN+AT A  GDGF+  D+ F+NT  P K   V LRV  D+S  YRC +  YQD LY H  RQ Y    +  TVDFI GNAAAVFQ C I
Sbjct:   54 PSWLSHVDKKDLYLNDETLKKITDILVAKDVTGNYNIVNVAIAAAPQHSQKRFVIYIKTSIYVEIVVIGNMKSNLTLIADGQDSTIITFNLSSSNSKRTFNTATFASNGDGFIRVDMCFRNTTWPVKGPVVTLRVNGDMSIIYRCRVEEYQDALYPHKNRQCYREYFLMDTVDFICGNAAAVFQFCQI 241          
BLAST of FC877835 vs. ExPASy Swiss-Prot
Match: PME53_ARATH (Probable pectinesterase 53 OS=Arabidopsis thaliana GN=PME53 PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 2.371e-23
Identity = 69/179 (38.55%), Postives = 96/179 (53.63%), Query Frame = 1
Query:  433 RYIIRIKAGEYRENVEVPKKK--INLMFXXXXXXXXXXXXSRNVVDGST----TFNSATVAVVGDGFLARDITFQNTA-----GPSKHQAVALRVGSDLSAFYRCDMLAYQDTLYVHSLRQFYTSCIIAGTVDFIFGNAAAVFQNCDIHARRPNPNQRNMVTAQGRDDPNQNTGIVIQK 936
            R +I++ AG Y+E V +P  K  I +              +    D       T+NSA+ AV    F+A++ITF+NT      G    QAVALRV +D +AF+ C ML  QDTLY H  R +Y  C I G+VDFIFGNA ++++ C +HA     ++   VTAQGR    ++TG    K
Sbjct:  113 RVVIKVHAGVYKEKVSIPPLKAFITIEGEGAEKTTVEWGDTAQTPDSKGNPMGTYNSASFAVNSPFFVAKNITFRNTTPVPLPGAVGKQAVALRVSADNAAFFGCRMLGAQDTLYDHLGRHYYKDCYIEGSVDFIFGNALSLYEGCHVHA---IADKLGAVTAQGRSSVLEDTGFSFVK 288          
BLAST of FC877835 vs. ExPASy Swiss-Prot
Match: PME8_ARATH (Probable pectinesterase 8 OS=Arabidopsis thaliana GN=PME8 PE=2 SV=2)

HSP 1 Score: 105.916 bits (263), Expect = 3.424e-22
Identity = 67/194 (34.54%), Postives = 95/194 (48.97%), Query Frame = 1
Query:  370 GSGNYLTXXXXXXXXPEGSSRRYIIRIKAGEYRENVEVPKKKINLMFXXXXXXXXXXXXSRNVVDGSTTFNSATVAVVGDGFLARDITFQNTA-----GPSKHQAVALRVGSDLSAFYRCDMLAYQDTLYVHSLRQFYTSCIIAGTVDFIFGNAAAVFQNCDI--HARRPNPNQR---NMVTAQGRDDPNQNTG 921
            G  N+ T           S RR +I I +G Y E V +PK K N+              +      + TF  ATV V G  F+A++I+F N A     G    QAVA+R+  D SAF  C     QDTL+    R ++  C I G++DFIFGNA +++Q+C I   A + +P  +     VTA GR   ++N+G
Sbjct:   97 GCCNFTTVQSAVDAVGNFSQRRNVIWINSGMYYEKVVIPKTKPNITLQGQGFDITAIAWNDTAYSANGTFYCATVQVFGSQFVAKNISFMNVAPIPKPGDVGAQAVAIRIAGDESAFVGCGFFGAQDTLHDDRGRHYFKDCYIQGSIDFIFGNAKSLYQDCRIISMANQLSPGSKAVNGAVTANGRSSKDENSG 290          
BLAST of FC877835 vs. ExPASy Swiss-Prot
Match: PME62_ARATH (Pectinesterase QRT1 OS=Arabidopsis thaliana GN=QRT1 PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 3.424e-22
Identity = 70/196 (35.71%), Postives = 99/196 (50.51%), Query Frame = 1
Query:  370 GSGNYLTXXXXXXXXPEGSSRRYIIRIKAGEYRENVEVPKKKINLMFXXXXXXXXXXXXSRNV------VDGST--TFNSATVAVVGDGFLARDITFQNT----AGPSKHQAVALRVGSDLSAFYRCDMLAYQDTLYVHSLRQFYTSCIIAGTVDFIFGNAAAVFQNCDIHARRPNPNQRNMVTAQGRDDPNQNTG 921
            G G+ +T        P+ +S+R  I I  G YRE V VPK K  + F            S +        DG    T+ +A+V++  D F A  ITF+NT    AG    QAVALR+  D + FYR  +L  QDTL+  +   ++  C I G VDFIFGNA +++Q+CDIH+      +   + A  RD   ++TG
Sbjct:   88 GGGDSVTVQGAVDMVPDSNSQRVKIFILPGIYREKVIVPKSKPYISFIGNESYAGDTVISWSDKASDLGCDGKELGTYRTASVSIESDFFCATAITFENTVVAEAGEQGRQAVALRIIGDKAVFYRVRVLGSQDTLFDDNGSHYFYQCYIQGNVDFIFGNAKSLYQDCDIHS---TAKRYGAIAAHHRDSETEDTG 280          
BLAST of FC877835 vs. ExPASy Swiss-Prot
Match: PME15_ARATH (Probable pectinesterase 15 OS=Arabidopsis thaliana GN=PME15 PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 1.301e-21
Identity = 62/191 (32.46%), Postives = 92/191 (48.17%), Query Frame = 1
Query:  370 GSGNYLTXXXXXXXXPEGSSRRYIIRIKAGEYRENVEVPKKKINLMFXXXXXXXXXXXXSRNVVDGSTTFNSATVAVVGDGFLARDITFQNTA-----GPSKHQAVALRVGSDLSAFYRCDMLAYQDTLYVHSLRQFYTSCIIAGTVDFIFGNAAAVFQNCDIH--ARRPNPNQRNMVTAQGRDDPNQNTG 921
            G GN+          P+ SS + +I + +G YRE V V + K NL+             +        T +S +  V    F A +I+F+N A     G +  QAVALR+  D +AFY C     QDTL     R F+  C I G++DFIFGN  +++Q+C I+  A+         +TAQGR   ++ +G
Sbjct:   97 GCGNFSNVQSAIDVVPDLSSSKTLIIVNSGSYREKVTVNENKTNLVIQGRGYQNTSIEWNDTAKSAGNTADSFSFVVFAANFTAYNISFKNNAPEPDPGEADAQAVALRIEGDQAAFYGCGFYGAQDTLLDDKGRHFFKECFIQGSIDFIFGNGRSLYQDCTINSIAKGNTSGVTGSITAQGRQSEDEQSG 287          
BLAST of FC877835 vs. ExPASy Swiss-Prot
Match: PME14_ARATH (Putative pectinesterase 14 OS=Arabidopsis thaliana GN=PME14 PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 2.899e-21
Identity = 62/173 (35.84%), Postives = 88/173 (50.87%), Query Frame = 1
Query:  424 SSRRYIIRIKAGEYRENVEVPKKKINLMFXXXXXXXXXXXXSRNVVDGSTTFNSATVAVVGDGFLARDITFQNTA-----GPSKHQAVALRVGSDLSAFYRCDMLAYQDTLYVHSLRQFYTSCIIAGTVDFIFGNAAAVFQNCDIHARRPNPNQRNMVTAQGRDDPNQNTGIV 927
            S  + +I I  G YRE   V + K NL+             +      + TF+S +VAV G+ F A +I+F+NTA     G    QAVAL+V  D +AFY C     QDTL     R F+  C I G++DFIFGN  +++++C +H+     N    +TA G+D     TG V
Sbjct:   66 SQSKTLILIDFGIYRERFIVHENKNNLVVQGMGYSRTSIEWNNTTASSNGTFSSFSVAVFGEKFTAYNISFKNTAPAPNPGAVDAQAVALKVVGDKAAFYGCGFYGNQDTLLDQEGRHFFKGCFIEGSIDFIFGNGRSLYEDCTLHS-IAKENTIGCITANGKDTLKDRTGFV 237          
The following BLAST results are available for this feature:
BLAST of FC877835 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 85
Match NameE-valueIdentityDescription
PME_BRANA5.441e-3632.80Probable pectinesterase/pectinesterase inhibitor O... [more]
PME54_ARATH3.527e-3533.00Probable pectinesterase/pectinesterase inhibitor 5... [more]
PME_BRACM3.899e-3432.27Pectinesterase/pectinesterase inhibitor (Fragment)... [more]
PME31_ARATH3.777e-2936.73Pectinesterase 31 OS=Arabidopsis thaliana GN=PME31... [more]
PME57_ARATH2.145e-2437.23Putative pectinesterase 57 OS=Arabidopsis thaliana... [more]
PME53_ARATH2.371e-2338.55Probable pectinesterase 53 OS=Arabidopsis thaliana... [more]
PME8_ARATH3.424e-2234.54Probable pectinesterase 8 OS=Arabidopsis thaliana ... [more]
PME62_ARATH3.424e-2235.71Pectinesterase QRT1 OS=Arabidopsis thaliana GN=QRT... [more]
PME15_ARATH1.301e-2132.46Probable pectinesterase 15 OS=Arabidopsis thaliana... [more]
PME14_ARATH2.899e-2135.84Putative pectinesterase 14 OS=Arabidopsis thaliana... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA53BF06RM1 IVIA1 Citrus clementina cDNA clone IC0AAA53BF06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877835 ID=FC877835; Name=FC877835; organism=Citrus clementina; type=EST; length=936bp
CTTCAGGGTTATCCTGCAGCAGCTAATAACAAGTCGATAGCTGAACAAGC
TGATGAGTTAAAGATCCTTGTGAGTGCTGCAATGACTAATCAAGAAACTT
GCCTTGATGGGTTCTCCCACGAGCGCGCTGATAAAAAGATCCGTGAAGAA
TTAATGGAGGGTCAAATGCACGTGTTTCACATGTGCAGCAATGCCTTGGC
AATGATCAAGAACATGACTGATGGTGATATAGGCAAAGACATTGTTGATC
ATTACTCTAAAGCCCGGCGTCTTGATGATGAAACGAAATGGCCTGAGTGG
TTATCAGCTGGGGACAGGAGGCTGCTGCAGGCAACAACGGTGGTACCTGA
TGTTACCGTGGCGGCTGATGGAAGCGGTAACTACCTGACTGTGGCCGCGG
CGGTGGCGGCTGCACCGGAGGGGAGTAGTCGGAGGTACATTATAAGGATT
AAAGCTGGGGAGTACAGAGAAAATGTGGAGGTGCCGAAGAAGAAAATTAA
TCTTATGTTTATTGGAGATGGGAGGACTACTACAATAATCACCGGTAGCA
GGAATGTGGTTGATGGCAGCACTACATTCAACTCTGCAACTGTTGCTGTG
GTAGGGGACGGATTCTTGGCCAGAGACATAACATTTCAAAACACGGCGGG
TCCGTCAAAACATCAAGCCGTGGCACTGAGAGTAGGATCAGATTTATCAG
CATTCTATAGGTGTGACATGCTAGCATACCAAGACACTCTCTATGTACAC
TCACTTCGCCAATTTTATACCAGCTGCATTATAGCAGGCACAGTGGACTT
CATTTTCGGAAATGCAGCAGCTGTGTTCCAAAACTGTGACATCCATGCTC
GCCGCCCCAATCCAAACCAAAGGAACATGGTCACGGCACAAGGCCGCGAC
GACCCGAATCAGAACACAGGCATAGTGATACAAAAA
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