FC877835

Overview
NameFC877835
Unique NameFC877835
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length936
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC877835 vs. ExPASy Swiss-Prot
Match: PME11_ARATH (Putative pectinesterase 11 OS=Arabidopsis thaliana GN=PME11 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 7.894e-19
Identity = 55/166 (33.13%), Postives = 86/166 (51.81%), Query Frame = 1
Query:  424 SSRRYIIRIKAGEYRENVEVPKKKINLMFXXXXXXXXXXXXSRNVVDGSTTFNSATVAVVGDGFLARDITFQNTAGPSKHQAVALRVGSDLSAFYRCDMLAYQDTLYVHSLRQFYTSCIIAGTVDFIFGNAAAVFQNCDIHARRPNPNQRNMVTAQGRDDPNQNTG 921
            +S+ Y I +K G YRE V +P +K  +              S    DG     S T+ +    F+ R +T QN  G +  +AVALRV +D +AFY C + +YQDTL   +   ++ +C I G  DFI G+A+++++ C +H+  PN      +TAQ R    + +G
Sbjct:   77 NSQLYFIWVKPGIYREKVVIPAEKPYITLSGTQASNTFLIWS----DGEDILESPTLTIFASDFVCRFLTIQNKFGTAG-RAVALRVAADKAAFYGCVITSYQDTLLDDNGNHYFKNCYIEGATDFICGSASSLYERCHLHSLSPN---NGSITAQMRTSATEKSG 234          
BLAST of FC877835 vs. ExPASy Swiss-Prot
Match: PME67_ARATH (Probable pectinesterase 67 OS=Arabidopsis thaliana GN=PME67 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.346e-18
Identity = 60/194 (30.93%), Postives = 94/194 (48.45%), Query Frame = 1
Query:  370 GSGNYLTXXXXXXXXPEGSSRRYIIRIKAGEYRENVEVPKKKINLMFXXXXXXXXXXXXSRNVVDGSTTFNSATVAVVGDGFLARDITFQNTAG-----PSKHQAVALRVGSDLSAFYRCDMLAYQDTLYVHSLRQFYTSCIIAGTVDFIFGNAAAVFQNCDIHA---RRPNPNQRNMVTAQGRDDPNQNTGIV 927
            G G+Y +        P G+S   I+ ++ G Y+E V +P+ K  +              S++ VD      SAT  V  + F+A  I+ +N A       S++Q+VA  V +D  AFY C   +  +TL+ +  R +Y  C I G++DFIFG A ++F NC+I     +R  P     +TA  R+   + TG V
Sbjct:   52 GKGDYTSVQKAIDAVPVGNSNWIIVHVRKGIYKERVHIPENKPFIFMRGNGKGKTVIESSQSSVDNVA---SATFKVEANHFVAFGISIRNDAPVGMAFTSENQSVAAFVAADKVAFYHCAFYSLHNTLFDNKGRHYYHECYIQGSIDFIFGRATSIFNNCEIFVISDKRVKP--YGSITAHHRESAEEKTGYV 240          
BLAST of FC877835 vs. ExPASy Swiss-Prot
Match: PME55_ARATH (Probable pectinesterase 55 OS=Arabidopsis thaliana GN=PME55 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.944e-17
Identity = 60/197 (30.46%), Postives = 89/197 (45.18%), Query Frame = 1
Query:  370 GSGNYLTXXXXXXXXPEGSSRRYIIRIKAGEYRENVEVPKKKINLMFXXXXXXXXXXXXSRNVVDGSTTFNSATVAVVGDGFLARDITFQNTAG-PSKHQ--------AVALRVGSDLSAFYRCDMLAYQDTLYVHSLRQFYTSCIIAGTVDFIFGNAAAVFQNCDIH--ARRPNPNQRNMVTAQGRDDPNQNTGIV 927
            G GN+ T        P  ++  + I +KAG YRE + +P+KK  ++                  D ++   S T A + D  + + ITF N+   PS  +        AVA  +G D SAFY       QDTL+    R ++  C I G VDFI G+  +++Q+C I     +  P     +TAQGR + N   G V
Sbjct:   35 GHGNFTTIQKAIDSVPINNTHWFFINVKAGLYREKITIPQKKPFIVIVGAGKRSTRVEWD----DHASLAQSPTFATLADNTVVKKITFANSYNFPSNGKINKNPRVPAVAAFIGGDKSAFYSVGFAGIQDTLWDSDGRHYFHRCTIQGAVDFILGSGQSIYQSCVIQVLGGQLGPGVTGYITAQGRTNANDANGFV 227          
BLAST of FC877835 vs. ExPASy Swiss-Prot
Match: PME29_ARATH (Probable pectinesterase 29 OS=Arabidopsis thaliana GN=PME29 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 2.539e-17
Identity = 59/197 (29.95%), Postives = 88/197 (44.67%), Query Frame = 1
Query:  370 GSGNYLTXXXXXXXXPEGSSRRYIIRIKAGEYRENVEVPKKKINLMFXXXXXXXXXXXXSRNVVDGSTTFNSATVAVVGDGFLARDITFQNTAG-PSKHQ--------AVALRVGSDLSAFYRCDMLAYQDTLYVHSLRQFYTSCIIAGTVDFIFGNAAAVFQNCDIH--ARRPNPNQRNMVTAQGRDDPNQNTGIV 927
            G GN+ T        P  +   + I +KAG YRE +++P +K  ++                  D  +   S T + + D  + + ITF N+   PSK +        AVA  +G D SAFY       QDTL+    R ++  C I G VDFIFG   +++Q+C I     +  P     +TAQGR +P    G +
Sbjct:   40 GHGNFTTIQKAIDSVPINNRHWFFINVKAGLYREKIKIPYEKPFIVLVGAGKRLTRVEWD----DHYSVAQSPTFSTLADNTVVKSITFANSYNFPSKGKMNKNPRTPAVAALIGGDKSAFYSVGFAGIQDTLWDFDGRHYFHRCTIQGAVDFIFGTGQSIYQSCVIQVLGGQLEPGLAGYITAQGRTNPYDANGFI 232          
BLAST of FC877835 vs. ExPASy Swiss-Prot
Match: PME68_ARATH (Probable pectinesterase 68 OS=Arabidopsis thaliana GN=PME68 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 4.331e-17
Identity = 56/180 (31.11%), Postives = 87/180 (48.33%), Query Frame = 1
Query:  415 PEGSSRRYIIRIKAGEYRENVEVPKKKINLMFXXXXXXXXXXXXSRNVVDGST------TFNSATVAVVGDGFLARDITFQNTA-----GPSKHQAVALRVGSDLSAFYRCDMLAYQDTLYVHSLRQFYTSCIIAGTVDFIFGNAAAVFQNCDIHARRPNPNQRNMVTAQGRDDPNQNTG 921
            P+ +++   I+I  G YRE V VP  K  + F                 D         T+ +A+V V  + F AR+I+F NTA     G    QAVA R+  D + F  C     QDTL   + R ++  C I G++DFIFGN  +++++C++H+     ++   + A GR  P + TG
Sbjct:   82 PKNNNKSITIKIAPGFYREKVVVPATKPYITFKGAGRDVTAIEWHDRASDLGANGQQLRTYQTASVTVYANYFTARNISFTNTAPAPLPGMQGWQAVAFRISGDKAFFSGCGFYGAQDTLCDDAGRHYFKECYIEGSIDFIFGNGRSMYKDCELHS---IASRFGSIAAHGRTCPEEKTG 258          
BLAST of FC877835 vs. ExPASy Swiss-Prot
Match: PME50_ARATH (Probable pectinesterase 50 OS=Arabidopsis thaliana GN=PME50 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.807e-16
Identity = 57/188 (30.32%), Postives = 84/188 (44.68%), Query Frame = 1
Query:  370 GSGNYLTXXXXXXXXPEGSSRRYIIRIKAGEYRENVEVPKKKINLMFXXXXXXXXXXXXSRNVVDGSTTFNSATVAVVGDGFLARDITFQNTAGP----SKHQAVALRVGSDLSAFYRCDMLAYQDTLYVHSLRQFYTSCIIAGTVDFIFGNAAAVFQNCDIHARRPNPNQRNMVTAQGRDDPNQNTG 921
            G  N+ T        P G+  R II++  G Y E V +   +  +                      T   SAT+ V  + F A  +T +NTA      S+ QA+A+R+ +D +AFY C    +QDTL       F+  C I GT DFIFG  A+++ N  +HA     +   ++TAQGR    +  G
Sbjct:   73 GGANFKTLNEAIKSIPTGNKNRVIIKLAPGVYNEKVTIDIARPFITLLGQPGAETVLTYHGTAAQYGTV-ESATLIVWAEYFQAAHLTIKNTAPMPKPGSQGQALAMRINADKAAFYSCRFHGFQDTLCDDKGNHFFKDCYIEGTYDFIFGRGASLYLNTQLHA---VGDGLRVITAQGRQSATEQNG 256          
BLAST of FC877835 vs. ExPASy Swiss-Prot
Match: PME48_ARATH (Probable pectinesterase 48 OS=Arabidopsis thaliana GN=PME48 PE=2 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 6.915e-15
Identity = 51/168 (30.36%), Postives = 85/168 (50.60%), Query Frame = 1
Query:  376 GNYLTXXXXXXXXPEGSSRRYIIRIKAGEYRENVEVPKKK--INLMFXXXXXXXXXXXXSRNVVDGST----TFNSATVAVVGDGFLARDITFQNTA----GPSKH-QAVALRVGSDLSAFYRCDMLAYQDTLYVHSLRQFYTSCIIAGTVDFIFGNAAAVFQNCDIH 846
            G + T        P G+++R II++  GEYRE V + + K  I LM                  DG+     T +SA++ ++ D F+A +I  +NTA    G +K  QA+++R+  + +AFY C    +QDT+   +   F+  C + GT DFIFG+  +++    +H
Sbjct:   74 GEFKTLTDAIKSVPAGNTKRVIIKMAHGEYREKVTIDRNKPFITLMGQPNAMPVI-------TYDGTAAKYGTVDSASLIILSDYFMAVNIVVKNTAPAPDGKTKGAQALSMRISGNFAAFYNCKFYGFQDTICDDTGNHFFKDCYVEGTFDFIFGSGTSMYLGTQLH 234          
BLAST of FC877835 vs. ExPASy Swiss-Prot
Match: PPME1_ARATH (Pectinesterase PPME1 OS=Arabidopsis thaliana GN=PPME1 PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.180e-14
Identity = 50/168 (29.76%), Postives = 85/168 (50.60%), Query Frame = 1
Query:  376 GNYLTXXXXXXXXPEGSSRRYIIRIKAGEYRENVEVPKKK--INLMFXXXXXXXXXXXXSRNVVDGST----TFNSATVAVVGDGFLARDITFQNTA----GPSKH-QAVALRVGSDLSAFYRCDMLAYQDTLYVHSLRQFYTSCIIAGTVDFIFGNAAAVFQNCDIH 846
            G + T        P G+++R II++  GEY+E V + + K  I LM                  DG+     T +SA++ ++ D F+A +I  +NTA    G +K  QA+++R+  + +AFY C    +QDT+   +   F+  C + GT DFIFG+  +++    +H
Sbjct:   74 GEFKTLTDAIKSVPAGNTKRVIIKMAPGEYKEKVTIDRNKPFITLMGQPNAMPVI-------TYDGTAAKYGTVDSASLIILSDYFMAVNIVVKNTAPAPDGKTKGAQALSMRISGNFAAFYNCKFYGFQDTICDDTGNHFFKDCYVEGTFDFIFGSGTSMYLGTQLH 234          
BLAST of FC877835 vs. ExPASy Swiss-Prot
Match: PMEA_DICD3 (Pectinesterase A OS=Dickeya dadantii (strain 3937) GN=pemA PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 2.225e-13
Identity = 63/196 (32.14%), Postives = 94/196 (47.96%), Query Frame = 1
Query:  415 PEGSSRRYIIRIKAGEYRENVEVPKKKINLMFXXXXXXXXXXXXSRNVV--DGST--TFNSATVAVVGDGFLARDITFQNT----AGPSKH----------QAVALRV--GSDLSAFYRCDMLAYQDTLYVHSLRQFYTSCIIAGTVDFIFGNAAAVFQNCDIHARR----PNPNQRNMVTAQGRDDPNQNTGIVI 930
            P GS+  ++I IK G Y E + + +  ++L              +   +  DGS   T  S+T+ +    F A+ +T +N     A  +K           QAVAL V    D + F    ++ YQDTLYV   R F++ C I+GTVDFIFG+  A+F NCD+ +R      + N    +TA    + NQ  G+VI
Sbjct:   53 PAGSTP-FVILIKNGVYNERLTITRNNLHLKGESRNGAVIAAATAAGTLKSDGSKWGTAGSSTITISAKDFSAQSLTIRNDFDFPANQAKSDSDSSKIKDTQAVALYVTKSGDRAYFKDVSLVGYQDTLYVSGGRSFFSDCRISGTVDFIFGDGTALFNNCDLVSRYRADVKSGNVSGYLTAPS-TNINQKYGLVI 246          
BLAST of FC877835 vs. ExPASy Swiss-Prot
Match: PME63_ARATH (Putative pectinesterase 63 OS=Arabidopsis thaliana GN=PME63 PE=3 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 2.905e-13
Identity = 48/158 (30.38%), Postives = 77/158 (48.73%), Query Frame = 1
Query:  370 GSGNYLTXXXXXXXXPEGSSRRYIIRIKAGEYRENVEVPKKKINLMFXXXXXXXXXXXXSRNVVDGSTTFNSATVAVVGDGFLARDITFQNTA----GPSKH-QAVALRVGSDLSAFYRCDMLAYQDTLYVHSLRQFYTSCIIAGTVDFIFGNAAAVF 828
            G G++ T          G++RR II+I  G Y+E V + + K  +                      T  +SAT+ V+ D F+A +I  +N+A    G  K  QA+++R+  + +AFY C    YQDT+   +   F+  C I GT DFIFG+  +++
Sbjct:   49 GRGHFKTITEAINSVRAGNTRRVIIKIGPGVYKEKVTIDRSKPFITLYGHPNAMPVLTFDGTAAQYGTV-DSATLIVLSDYFMAVNIILKNSAPMPDGKRKGAQALSMRISGNKAAFYNCKFYGYQDTICDDTGNHFFKDCYIEGTFDFIFGSGRSLY 205          
The following BLAST results are available for this feature:
BLAST of FC877835 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 85
Match NameE-valueIdentityDescription
PME11_ARATH7.894e-1933.13Putative pectinesterase 11 OS=Arabidopsis thaliana... [more]
PME67_ARATH1.346e-1830.93Probable pectinesterase 67 OS=Arabidopsis thaliana... [more]
PME55_ARATH1.944e-1730.46Probable pectinesterase 55 OS=Arabidopsis thaliana... [more]
PME29_ARATH2.539e-1729.95Probable pectinesterase 29 OS=Arabidopsis thaliana... [more]
PME68_ARATH4.331e-1731.11Probable pectinesterase 68 OS=Arabidopsis thaliana... [more]
PME50_ARATH2.807e-1630.32Probable pectinesterase 50 OS=Arabidopsis thaliana... [more]
PME48_ARATH6.915e-1530.36Probable pectinesterase 48 OS=Arabidopsis thaliana... [more]
PPME1_ARATH1.180e-1429.76Pectinesterase PPME1 OS=Arabidopsis thaliana GN=PP... [more]
PMEA_DICD32.225e-1332.14Pectinesterase A OS=Dickeya dadantii (strain 3937)... [more]
PME63_ARATH2.905e-1330.38Putative pectinesterase 63 OS=Arabidopsis thaliana... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA53BF06RM1 IVIA1 Citrus clementina cDNA clone IC0AAA53BF06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877835 ID=FC877835; Name=FC877835; organism=Citrus clementina; type=EST; length=936bp
CTTCAGGGTTATCCTGCAGCAGCTAATAACAAGTCGATAGCTGAACAAGC
TGATGAGTTAAAGATCCTTGTGAGTGCTGCAATGACTAATCAAGAAACTT
GCCTTGATGGGTTCTCCCACGAGCGCGCTGATAAAAAGATCCGTGAAGAA
TTAATGGAGGGTCAAATGCACGTGTTTCACATGTGCAGCAATGCCTTGGC
AATGATCAAGAACATGACTGATGGTGATATAGGCAAAGACATTGTTGATC
ATTACTCTAAAGCCCGGCGTCTTGATGATGAAACGAAATGGCCTGAGTGG
TTATCAGCTGGGGACAGGAGGCTGCTGCAGGCAACAACGGTGGTACCTGA
TGTTACCGTGGCGGCTGATGGAAGCGGTAACTACCTGACTGTGGCCGCGG
CGGTGGCGGCTGCACCGGAGGGGAGTAGTCGGAGGTACATTATAAGGATT
AAAGCTGGGGAGTACAGAGAAAATGTGGAGGTGCCGAAGAAGAAAATTAA
TCTTATGTTTATTGGAGATGGGAGGACTACTACAATAATCACCGGTAGCA
GGAATGTGGTTGATGGCAGCACTACATTCAACTCTGCAACTGTTGCTGTG
GTAGGGGACGGATTCTTGGCCAGAGACATAACATTTCAAAACACGGCGGG
TCCGTCAAAACATCAAGCCGTGGCACTGAGAGTAGGATCAGATTTATCAG
CATTCTATAGGTGTGACATGCTAGCATACCAAGACACTCTCTATGTACAC
TCACTTCGCCAATTTTATACCAGCTGCATTATAGCAGGCACAGTGGACTT
CATTTTCGGAAATGCAGCAGCTGTGTTCCAAAACTGTGACATCCATGCTC
GCCGCCCCAATCCAAACCAAAGGAACATGGTCACGGCACAAGGCCGCGAC
GACCCGAATCAGAACACAGGCATAGTGATACAAAAA
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