FC877835

Overview
NameFC877835
Unique NameFC877835
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length936
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC877835 vs. ExPASy Swiss-Prot
Match: PMEA_ERWCH (Pectinesterase A OS=Erwinia chrysanthemi GN=pemA PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 6.472e-13
Identity = 63/196 (32.14%), Postives = 93/196 (47.45%), Query Frame = 1
Query:  415 PEGSSRRYIIRIKAGEYRENVEVPKKKINLMFXXXXXXXXXXXXSRNVV--DGST--TFNSATVAVVGDGFLARDITFQNT----AGPSKH----------QAVALRV--GSDLSAFYRCDMLAYQDTLYVHSLRQFYTSCIIAGTVDFIFGNAAAVFQNCDIHARR----PNPNQRNMVTAQGRDDPNQNTGIVI 930
            P GS+  ++I IK G Y E + + +  + L              +   +  DGS   T  S+T+ +    F A+ +T +N     A  +K           QAVAL V    D + F    ++ YQDTLYV   R F++ C I+GTVDFIFG+  A+F NCD+ +R      + N    +TA    + NQ  G+VI
Sbjct:   53 PAGSTP-FVILIKNGVYNERLTITRNNLLLKGESRNGAVIAAATAAGTLKSDGSKWGTAGSSTITISAKDFSAQSLTIRNDFDFPANQAKSDSDSSKIKDTQAVALYVTKSGDRAYFKDVSLVGYQDTLYVSGGRSFFSDCRISGTVDFIFGDGTALFNNCDLVSRYRADVKSGNVSGYLTAPS-TNINQKYGLVI 246          
BLAST of FC877835 vs. ExPASy Swiss-Prot
Match: PME49_ARATH (Probable pectinesterase 49 OS=Arabidopsis thaliana GN=PME49 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 6.472e-13
Identity = 49/164 (29.88%), Postives = 72/164 (43.90%), Query Frame = 1
Query:  370 GSGNYLTXXXXXXXXPEGSSRRYIIRIKAGEYRENVEVPKKKINLMFXXXXXXXXXXXXSRNVVDGSTTFNSATVAVVGDGFLARDITFQNTAGPSKH----QAVALRVGSDLSAFYRCDMLAYQDTLYVHSLRQFYTSCIIAGTVDFIFGNAAAVFQNCDIHA 849
            G G++ T        P  +  R II++  G Y E V V   +  +              +       T   SAT+ V    FLA ++   NT+   K     QA+A+R+  D +AFY C    +QDTL       F+ +C I GT DFIFG  A+++    +HA
Sbjct:   73 GGGDFKTINAAIKSIPLANKNRVIIKLAPGIYHEKVTVDVGRPYVTLLGKPGAETNLTYAGTAAKYGTV-ESATLIVWATNFLAANLNIINTSPMPKPGTQGQALAMRINGDKAAFYNCRFYGFQDTLCDDRGNHFFKNCYIEGTYDFIFGRGASLYLTTQLHA 235          
BLAST of FC877835 vs. ExPASy Swiss-Prot
Match: PME10_ARATH (Putative pectinesterase 10 OS=Arabidopsis thaliana GN=PME10 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 5.479e-12
Identity = 52/173 (30.06%), Postives = 73/173 (42.20%), Query Frame = 1
Query:  442 IRIKAGEYRENVEVPKKKINLMFXXXXXXXXXXXXSRNVVDGSTTFNSATVAVVGDGFLARDITFQN------TAGPSKHQAVALRVGSDLSAFYRCDMLAYQDTLYVHSLRQFYTSCIIAGTVDFIFGNAAAVFQNCDIHAR---RPNPNQRNMVTAQGRDDPNQNTGIVIQ 933
            I I  G Y E V +P+ K  +                   D   T  SAT        +   ITF+N      ++ P+K    A+ +G D  A        +QDTLY    R +Y  C+I+G +DFIFG A ++F+ C +  R    P       +TAQGRD P    G V +
Sbjct:   71 ILISNGIYSEKVTIPRGKGYIYMQGGGIEKTIIAYG----DHQLTNTSATFTSYPSNIIITGITFKNKYNIASSSSPTKPAVAAMMLG-DKYAIIDSSFDGFQDTLYDDYGRHYYKRCVISGGIDFIFGGAQSIFEGCTLKLRVGIYPPNEVYGTITAQGRDSPTDKGGFVFK 238          
BLAST of FC877835 vs. ExPASy Swiss-Prot
Match: PME_ASPAC (Pectinesterase OS=Aspergillus aculeatus GN=pme1 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.551e-11
Identity = 46/126 (36.51%), Postives = 61/126 (48.41%), Query Frame = 1
Query:  562 DGSTTFNSATVAVVGDGFLARDITFQNTAGPSKHQAVALRVGSDLSAFYRCDMLAYQDTLYVHSLRQFYTSCIIAGTVDFIFG-NAAAVFQNCDIHARRPNPNQRNMVTAQGRDDPNQNTGIVIQK 936
            D + TF +  V     G    ++   NT G + HQA+AL   +D   +Y C+   YQDTL   +  Q Y +  I G VDFIFG +A A FQN DI      P   + +TA GR      +  VI K
Sbjct:  110 DLTATFRNKAV-----GSQVYNLNIANTCGQACHQALALSAWADQQGYYGCNFTGYQDTLLAQTGNQLYINSYIEGAVDFIFGQHARAWFQNVDIRVVE-GPTSAS-ITANGRSSETDTSYYVINK 228          
BLAST of FC877835 vs. ExPASy Swiss-Prot
Match: PME_ASPTU (Pectinesterase OS=Aspergillus tubingensis GN=pme1 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.912e-11
Identity = 54/195 (27.69%), Postives = 79/195 (40.51%), Query Frame = 1
Query:  376 GNYLTXXXXXXXXPEGSSRRYIIRIKAGEYRENVEVPKKKINLMFXXXXXXXXXXXXSR-------NVVDGSTTFNSATVAVVGDGFLARDITFQNTAGPSKHQAVALRVGSDLSAFYRCDMLAYQDTLYVHSLRQFYTSCIIAGTVDFIFG-NAAAVFQNCDIHARRPNPNQRNMVTAQGRDDPNQNTGIVIQK 936
            G+Y T           S+    I I+ G Y E V +P     L+             +         + D      +AT+    +G    ++   NT G + HQA+A+   +    +Y C    YQDTL   +  Q Y    I G VDFIFG +A A F  CDI      P+  + +TA GR   + ++  VI K
Sbjct:   35 GDYDTISAAVDALSTTSTETQTIFIEEGSYDEQVYIPALSGKLIVYGQTEDTTTYTSNLVNITHAIALADVDNDDETATLRNYAEGSAIYNLNIANTCGQACHQALAVSAYASEQGYYACQFTGYQDTLLAETGYQVYAGTYIEGAVDFIFGQHARAWFHECDIRVLE-GPSSAS-ITANGRSSESDDSYYVIHK 227          
The following BLAST results are available for this feature:
BLAST of FC877835 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 85
Match NameE-valueIdentityDescription
PMEA_ERWCH6.472e-1332.14Pectinesterase A OS=Erwinia chrysanthemi GN=pemA P... [more]
PME49_ARATH6.472e-1329.88Probable pectinesterase 49 OS=Arabidopsis thaliana... [more]
PME10_ARATH5.479e-1230.06Putative pectinesterase 10 OS=Arabidopsis thaliana... [more]
PME_ASPAC3.551e-1136.51Pectinesterase OS=Aspergillus aculeatus GN=pme1 PE... [more]
PME_ASPTU7.912e-1127.69Pectinesterase OS=Aspergillus tubingensis GN=pme1 ... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA53BF06RM1 IVIA1 Citrus clementina cDNA clone IC0AAA53BF06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877835 ID=FC877835; Name=FC877835; organism=Citrus clementina; type=EST; length=936bp
CTTCAGGGTTATCCTGCAGCAGCTAATAACAAGTCGATAGCTGAACAAGC
TGATGAGTTAAAGATCCTTGTGAGTGCTGCAATGACTAATCAAGAAACTT
GCCTTGATGGGTTCTCCCACGAGCGCGCTGATAAAAAGATCCGTGAAGAA
TTAATGGAGGGTCAAATGCACGTGTTTCACATGTGCAGCAATGCCTTGGC
AATGATCAAGAACATGACTGATGGTGATATAGGCAAAGACATTGTTGATC
ATTACTCTAAAGCCCGGCGTCTTGATGATGAAACGAAATGGCCTGAGTGG
TTATCAGCTGGGGACAGGAGGCTGCTGCAGGCAACAACGGTGGTACCTGA
TGTTACCGTGGCGGCTGATGGAAGCGGTAACTACCTGACTGTGGCCGCGG
CGGTGGCGGCTGCACCGGAGGGGAGTAGTCGGAGGTACATTATAAGGATT
AAAGCTGGGGAGTACAGAGAAAATGTGGAGGTGCCGAAGAAGAAAATTAA
TCTTATGTTTATTGGAGATGGGAGGACTACTACAATAATCACCGGTAGCA
GGAATGTGGTTGATGGCAGCACTACATTCAACTCTGCAACTGTTGCTGTG
GTAGGGGACGGATTCTTGGCCAGAGACATAACATTTCAAAACACGGCGGG
TCCGTCAAAACATCAAGCCGTGGCACTGAGAGTAGGATCAGATTTATCAG
CATTCTATAGGTGTGACATGCTAGCATACCAAGACACTCTCTATGTACAC
TCACTTCGCCAATTTTATACCAGCTGCATTATAGCAGGCACAGTGGACTT
CATTTTCGGAAATGCAGCAGCTGTGTTCCAAAACTGTGACATCCATGCTC
GCCGCCCCAATCCAAACCAAAGGAACATGGTCACGGCACAAGGCCGCGAC
GACCCGAATCAGAACACAGGCATAGTGATACAAAAA
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