FC877840

Overview
NameFC877840
Unique NameFC877840
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length924
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC877840 vs. ExPASy Swiss-Prot
Match: MIP_HUMAN (Lens fiber major intrinsic protein OS=Homo sapiens GN=MIP PE=1 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 3.224e-25
Identity = 76/239 (31.80%), Postives = 116/239 (48.54%), Query Frame = 2
Query:  176 ELTKWSFYRALIAEFIAXXXXXXXXXXXXIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHNFI 892
            EL   SF+RA+ AEF A            +G   +  P         + +L +A AFG  +  LV     ISG H+NPAVTF   +  ++SL+RA  YM AQ LGA++G  ++ +       R     N L    S G     EI  T   V  +F+  D +R+ +   V     L +GF++ + HL  +  TG G+NPARS   A++      + + W++WVGP IG  + +  ++F+
Sbjct:    3 ELRSASFWRAIFAEFFATLFYVFFG----LGSSLRWAPGP-------LHVLQVAMAFGLALATLVQSVGHISGAHVNPAVTFAFLVGSQMSLLRAFCYMAAQLLGAVAGAAVLYSVTPP-AVRGNLALNTLHPAVSVGQATTVEIFLTLQFVLCIFATYDERRNGQLGSV----ALAVGFSLALGHLFGMYYTGAGMNPARSFAPAILTGN---FTNHWVYWVGPIIGGGLGSLLYDFL 222          
BLAST of FC877840 vs. ExPASy Swiss-Prot
Match: MIP_CAVPO (Lens fiber major intrinsic protein OS=Cavia porcellus GN=MIP PE=1 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 3.224e-25
Identity = 77/239 (32.22%), Postives = 117/239 (48.95%), Query Frame = 2
Query:  176 ELTKWSFYRALIAEFIAXXXXXXXXXXXXIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHNFI 892
            EL   SF+RA+ AEF A            +G   +  P         + +L +A AFG  +  LV     ISG H+NPAVTF   +  ++SL+RA  YM AQ LGA++G  ++ +       R     N L  G S       EI  T   V  +F+  D +R+ R   V     L +GF++ + HL  +  TG G+NPARS   A++    + + + W++WVGP IG  + +  ++F+
Sbjct:    3 ELRSASFWRAIFAEFFATLFYVFFG----LGASLRWAPGP-------LHVLQVALAFGLALAXLVQTVGHISGAHVNPAVTFXFLVGSQMSLLRAFCYMAAQLLGAVAGAAVLYSVTPP-AVRGNLALNTLHAGVSVXQATTVEIFLTLQFVLCIFATYDERRNGRLGSV----ALAVGFSLTLGHLFGMYYTGAGMNPARSFAPAIL---TRNFTNHWVYWVGPIIGGGLGSLLYDFL 222          
BLAST of FC877840 vs. ExPASy Swiss-Prot
Match: AQPZ_VIBVU (Aquaporin Z OS=Vibrio vulnificus GN=aqpZ PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 3.224e-25
Identity = 66/201 (32.84%), Postives = 101/201 (50.25%), Query Frame = 2
Query:  314 GVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYY----TRYGGGANELAD----GYSTGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHNFI 892
            G+G+LG++ AFG  +  + +    ISG H+NPAVT GL+   +      V Y++AQ +G +   G++            T  G  +N   +    GYS    L  E++ T + +  +  ATD +           AP+ IG  + ++HL +IP+T T +NPARS G A +Y  D A    WLFWV P +GA + A  +  I
Sbjct:   32 GIGLLGVSLAFGLTVLTMAFAIGHISGCHLNPAVTIGLWAGGRFEAKEIVPYILAQVIGGVIAGGVLYTIASGQMGFDATSSGFASNGYGEHSPGGYSLTSALVTEVVMTMMFLLVILGATDQRAPQG------FAPIAIGLCLTLIHLISIPVTNTSVNPARSTGVA-LYVGDWATAQLWLFWVAPILGALLGAVAYKLI 225          
BLAST of FC877840 vs. ExPASy Swiss-Prot
Match: TIP41_ARATH (Aquaporin TIP4-1 OS=Arabidopsis thaliana GN=TIP4-1 PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 4.210e-25
Identity = 88/243 (36.21%), Postives = 123/243 (50.62%), Query Frame = 2
Query:  176 ELTKWSFYRALIAEFIAXXXXXXXXXXXXIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAG-ISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYT-RYGGGANELADGYSTGVGLAAEIIGTFVLVYTVFSA-TDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAF-YHNFI 892
            E  K    +ALI EFI             +G    TD   ++ G   VG+  +A A   ++ V++  +AG ISGGH+NPAVT GL L   +S+ RA +Y + Q L + +       F  SY T   G   + LA G S   G+  EII TF L++TV++   DPK+ + D   P+L     GF V    LA    +G  +NPARS G A++      W D W++WVGP IG  +A F Y N +
Sbjct:   11 EAAKPDCIKALIVEFITTFLFVFAG----VGSAMATD---SLVGNTLVGLFAVAVAHAFVVAVMI--SAGHISGGHLNPAVTLGLLLGGHISVFRAFLYWIDQLLASSAA-----CFLLSYLTGGMGTPVHTLASGVSYTQGIIWEIILTFSLLFTVYATIVDPKKGSLDGFGPLLT----GFVVGANILAGGAFSGASMNPARSFGPALVSGN---WTDHWVYWVGPLIGGGLAGFIYENVL 232          
BLAST of FC877840 vs. ExPASy Swiss-Prot
Match: AQY1_YEAST (Aquaporin-1 OS=Saccharomyces cerevisiae GN=AQY1 PE=1 SV=2)

HSP 1 Score: 115.546 bits (288), Expect = 4.210e-25
Identity = 71/190 (37.37%), Postives = 99/190 (52.11%), Query Frame = 2
Query:  302 DGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIA 871
            DG     ++ IA  FG  +   ++C AG+SGG +NPAV+  L LAR VS  R V+  V+Q +  ++  G   A            AN L  G S   GL  E+ GT +L  TV      KR         +A LPIG ++F+ H+A    TGTG+NPARSLGAAV       +   W++W+GP +G+ +A
Sbjct:   84 DGSHPGQLIMIAIGFGFSVMFSIWCFAGVSGGALNPAVSLSLCLARAVSPTRCVVMWVSQIVAGMAAGGAASAMTPGEVL----FANSLGLGCSRTRGLFLEMFGTAILCLTVLMTAVEKRETN-----FMAALPIGISLFIAHVALTAYTGTGVNPARSLGAAVAARYFPHY--HWIYWIGPLLGSILA 262          
BLAST of FC877840 vs. ExPASy Swiss-Prot
Match: AQPZ_SHEON (Aquaporin Z OS=Shewanella oneidensis GN=aqpZ PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 4.210e-25
Identity = 65/199 (32.66%), Postives = 104/199 (52.26%), Query Frame = 2
Query:  314 GVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVG---LVKAFQKSYYTRYGGGANELAD----GYSTGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHNF 889
            G+G+LG++ AFG  +  + +    ISG H+NPAV+FGL+   +      + Y++AQ  G I+G G   L+ + Q+ +    G  +N   +    GYS    +  EI+ T   +  +  +TD +           AP+ IG  + ++HL +IPI+ T +NPARS G A ++  D A    WLFW  P IGA +A   + +
Sbjct:   33 GIGLLGVSLAFGLTVLTMAFAIGHISGCHLNPAVSFGLWAGGRFPTSELLPYIIAQVAGGIAGAGVLYLIASGQEGFSLAAGFASNGFGEHSPGGYSMISVMICEIVMTLFFLLVILGSTDERAPKG------FAPIAIGLCLTLIHLISIPISNTSVNPARSTGPA-LFVGDWAVSQLWLFWAAPIIGAILAGVIYRY 224          
BLAST of FC877840 vs. ExPASy Swiss-Prot
Match: AQY2_YEAST (Aquaporin-2 OS=Saccharomyces cerevisiae GN=AQY2 PE=1 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 5.499e-25
Identity = 71/185 (38.38%), Postives = 97/185 (52.43%), Query Frame = 2
Query:  323 ILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQ--KSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIA 871
            ++ IA  FG  +   ++C AG+SGG +NPAV+  L LAR +S  R V+    Q +  ++  G   A    K  +T      N L  G S   GL  E+ GT VL  TV      KR         +A LPIG ++FM H+A    TGTG+NPARSLGAAV       +   W++W+GP +GA +A
Sbjct:   90 LIMIALGFGFSVMFSIWCFAGVSGGALNPAVSLSLCLARAISPARCVVMWFPQIIAGMAAGGAASAMTPGKVLFT------NALGLGCSRSRGLFLEMFGTAVLCLTVLMTAVEKRETN-----FMAALPIGISLFMAHMALTGYTGTGVNPARSLGAAVAARYFPHY--HWIYWIGPLLGAFLA 261          
BLAST of FC877840 vs. ExPASy Swiss-Prot
Match: AQPZ_PHOLL (Aquaporin Z OS=Photorhabdus luminescens subsp. laumondii GN=aqpZ PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 5.499e-25
Identity = 64/193 (33.16%), Postives = 98/193 (50.78%), Query Frame = 2
Query:  314 GVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYY----TRYGGGANELAD----GYSTGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAI 868
            G+G +G++ AFG  +  ++Y    ISGGH NPAVT GL+   +   V  + Y+++Q +G I    ++            T  G  +N   +    G+S    + AEI+ T + +  +  ATD +        P  APL IG A+ +++L +IPIT T +NPARS   A+  N   A +  W FWV P IG  +
Sbjct:   33 GIGFVGVSLAFGLTVLTMIYAVGHISGGHFNPAVTIGLWAGGRFRAVEVIPYIISQVIGGILAAAVLYVIASGQVGFDATTSGFASNGFGEHSPGGFSLQSAIVAEIVLTAIFLIVIIGATDRRAP------PGFAPLAIGLALVLINLISIPITNTSVNPARSTAVAIFQN-TWALEQLWFFWVMPIIGGIV 218          
BLAST of FC877840 vs. ExPASy Swiss-Prot
Match: TIP31_ORYSJ (Probable aquaporin TIP3-1 OS=Oryza sativa subsp. japonica GN=TIP3-1 PE=2 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 7.182e-25
Identity = 68/196 (34.69%), Postives = 103/196 (52.55%), Query Frame = 2
Query:  320 GILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVG----LAAEIIGTFVLVYTVFSAT-DPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHNFI 892
            G++ ++ A    + V V     ISGGH+NPA+TFG  L  ++SL+RA+ Y +AQ LGA+    L++           GG        ++GVG    +  E   TF L+Y  ++   DPKR     HV  +APL +GF +    LA  P  G G+NPAR  G A++      W   W++W+GPF+GA +A   + ++
Sbjct:   62 GLVAVSLAHALALAVAVAVAVNISGGHVNPAITFGALLGGRLSLIRALFYWLAQLLGAVVATLLLRLTT--------GGMRPPGFALASGVGDWHAVLLEATMTFGLMYAYYATVIDPKR----GHVGTIAPLAVGFLLGANMLAGGPFDGAGMNPARVFGPALV---GWRWRHHWVYWLGPFVGAGLAGLLYEYL 242          
BLAST of FC877840 vs. ExPASy Swiss-Prot
Match: TIP11_ORYSJ (Probable aquaporin TIP1-1 OS=Oryza sativa subsp. japonica GN=TIP1-1 PE=2 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 7.182e-25
Identity = 76/232 (32.76%), Postives = 112/232 (48.28%), Query Frame = 2
Query:  200 RALIAEFIAXXXXXXXXXXXXIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLVYTVF-SATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHNFI 892
            +A +AEFI+            + +   T            G++  A A    +FV V   A ISGGH+NPAVTFG F+   ++L R ++Y +AQ LG+     L++       T   G       G S    L  EI+ TF LVYTV+ +A DPK+ +    +  +AP+ IGF V    L      G  +NPA S G A++     +W+ QW++WVGP IG  +A   +  +
Sbjct:   21 KAALAEFISTLIFVFAGQGSGMAFSKLTGGGATTPA----GLIAAAVAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGNITLFRGLLYWIAQLLGSTVACFLLRFSTGGLATGTFG-----LTGVSVWEALVLEIVMTFGLVYTVYATAVDPKKGS----LGTIAPIAIGFIVGANILVGGAFDGASMNPAVSFGPALV---SWSWESQWVYWVGPLIGGGLAGVIYEVL 236          
The following BLAST results are available for this feature:
BLAST of FC877840 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 195
Match NameE-valueIdentityDescription
MIP_HUMAN3.224e-2531.80Lens fiber major intrinsic protein OS=Homo sapiens... [more]
MIP_CAVPO3.224e-2532.22Lens fiber major intrinsic protein OS=Cavia porcel... [more]
AQPZ_VIBVU3.224e-2532.84Aquaporin Z OS=Vibrio vulnificus GN=aqpZ PE=3 SV=1[more]
TIP41_ARATH4.210e-2536.21Aquaporin TIP4-1 OS=Arabidopsis thaliana GN=TIP4-1... [more]
AQY1_YEAST4.210e-2537.37Aquaporin-1 OS=Saccharomyces cerevisiae GN=AQY1 PE... [more]
AQPZ_SHEON4.210e-2532.66Aquaporin Z OS=Shewanella oneidensis GN=aqpZ PE=3 ... [more]
AQY2_YEAST5.499e-2538.38Aquaporin-2 OS=Saccharomyces cerevisiae GN=AQY2 PE... [more]
AQPZ_PHOLL5.499e-2533.16Aquaporin Z OS=Photorhabdus luminescens subsp. lau... [more]
TIP31_ORYSJ7.182e-2534.69Probable aquaporin TIP3-1 OS=Oryza sativa subsp. j... [more]
TIP11_ORYSJ7.182e-2532.76Probable aquaporin TIP1-1 OS=Oryza sativa subsp. j... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA99CF07RM1 IVIA1 Citrus clementina cDNA clone IC0AAA99CF07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877840 ID=FC877840; Name=FC877840; organism=Citrus clementina; type=EST; length=924bp
AAGGCTTCTCTCTCGTTGTGCTTGTGGCTTTGCAGTGCTCTCAGTTTTCT
CTGTTTCTCTCCAAATCATTGTTACTGGTTTTCCAATGGCGAAGGACACT
GGGGTGGCAGAGCACGGCTCATATTCAGCCAAGGACTACACGGACCCACC
GCCGGAGCCGCTATTCGACGCCGTGGAGCTGACCAAATGGTCATTCTACA
GAGCCTTGATAGCTGAGTTCATAGCAACCCTGCTCTTTCTTTACGTCACT
GTCTTGACTGTCATTGGCTACAAAAGCCAGACCGATCCCGCCAAGAACGT
CGACGGCTGTGCCGGCGTCGGCATCCTCGGTATCGCCTGGGCCTTCGGTG
GCATGATCTTTGTCCTCGTTTACTGCACCGCCGGTATCTCAGGTGGTCAC
ATTAACCCGGCAGTGACGTTCGGACTATTCTTGGCCCGCAAGGTGTCGTT
GGTCCGTGCTGTGATGTACATGGTGGCGCAGTGCCTTGGTGCAATCTCCG
GTGTTGGGTTGGTCAAGGCTTTCCAAAAATCTTACTACACAAGGTACGGA
GGTGGGGCCAACGAGCTGGCCGATGGGTACAGCACAGGCGTTGGATTGGC
CGCCGAGATCATCGGCACCTTTGTGTTGGTTTACACTGTCTTCTCGGCCA
CTGATCCCAAGAGAAGCGCCAGAGACTCCCATGTCCCCGTTTTGGCACCG
CTCCCCATTGGATTTGCTGTGTTCATGGTACACTTGGCCACAATCCCAAT
CACTGGCACTGGCATTAACCCAGCAAGGAGTCTCGGGGCCGCTGTTATTT
ACAACAAGGACAAGGCTTGGGATGATCAATGGCTCTTCTGGGTTGGACCC
TTCATCGGTGCAGCAATTGCGGCTTTCTACCACAATTTCATCTGAGAGCT
GGAGCTGTCAAGGCTCTTGGGTTC
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