FC877840

Overview
NameFC877840
Unique NameFC877840
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length924
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC877840 vs. ExPASy Swiss-Prot
Match: NIP41_ARATH (Putative aquaporin NIP4-1 OS=Arabidopsis thaliana GN=NIP4-1 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 3.344e-14
Identity = 55/189 (29.10%), Postives = 91/189 (48.15%), Query Frame = 2
Query:  329 GIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGA-ISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHNFI 892
            GI   +G ++ V++Y T  ISG H NPAVT    + R+    +  +Y+ AQ  G+ ++ + L   F+ +    +G          S    L AEII +F+L++ +       R+     V  LA + +G  + +      PI+G  +NPARSLG A++      +   W++ VGP +G     F +N I
Sbjct:   77 GICVTWGLIVMVMIYSTGHISGAHFNPAVTVTFAIFRRFPWHQVPLYIGAQFAGSLLASLTLRLMFKVTPEAFFG-----TTPADSPARALVAEIIISFLLMFVISGVATDNRA-----VGELAGIAVGMTIMVNVFVAGPISGASMNPARSLGPALVMG---VYKHIWVYIVGPVLGVISGGFVYNLI 252          
BLAST of FC877840 vs. ExPASy Swiss-Prot
Match: NIP31_ARATH (Aquaporin NIP3-1 OS=Arabidopsis thaliana GN=NIP3-1 PE=2 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 3.344e-14
Identity = 65/241 (26.97%), Postives = 103/241 (42.74%), Query Frame = 2
Query:  179 LTKWSFYRALIAEFIAXXXXXXXXXXXXIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLG---AISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHNFI 892
            L   SF + LI EF+             +  ++   P         V + GIA  +G ++ V++Y    +SG H NPAV+     ++K    +   Y+ AQ LG   A + + LV        +  G          S       E I TF L++ + +    KR+         A + IG  + +  L + PI+G  +NPARSLG A+I+     + D WL+ V P IGA   A+ +  +
Sbjct:   36 LVSVSFVQKLIGEFVGTFTMIFAGCSAIVVNETYGKP---------VTLPGIALVWGLVVTVMIYSIGHVSGAHFNPAVSIAFASSKKFPFNQVPGYIAAQLLGSTLAAAVLRLVFHLDDDVCSLKGDVYVGTYPSNSNTTSFVMEFIATFNLMFVISAVATDKRATGS-----FAGIAIGATIVLDILFSGPISGASMNPARSLGPALIWG---CYKDLWLYIVSPVIGALSGAWTYGLL 259          
BLAST of FC877840 vs. ExPASy Swiss-Prot
Match: NIP23_MAIZE (Aquaporin NIP2-3 OS=Zea mays GN=NIP2-3 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 3.344e-14
Identity = 58/199 (29.15%), Postives = 94/199 (47.24%), Query Frame = 2
Query:  311 AGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVG-----LAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHNFI 892
            A +  LG + A G ++ V++Y T  ISG H+NPAVT      R    ++   Y  AQ  GA+    ++KA  +               G +T  G     LA EI+ TF +++   +     R+     V  LA L +G AV +  +   P++G  +NPAR+L  AV  N    +   W++++GP +G    A+ + +I
Sbjct:   83 ARISQLGQSVAGGLIVTVMIYATGHISGAHMNPAVTLSFACFRHFPWIQVPFYWAAQFTGAMCAAFVLKAVLQPI----------AVIGTTTPSGPHWHALAIEIVVTFNMMFVTCAVATDSRA-----VGELAGLAVGSAVCITSIFAGPVSGGSMNPARTLAPAVASN---VFTGLWIYFLGPVVGTLSGAWVYTYI 263          
BLAST of FC877840 vs. ExPASy Swiss-Prot
Match: GLPF_BACSU (Glycerol uptake facilitator protein OS=Bacillus subtilis GN=glpF PE=2 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 5.704e-14
Identity = 58/217 (26.73%), Postives = 93/217 (42.86%), Query Frame = 2
Query:  308 CAGV----------GILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTG-------VGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIY-------NKDKAWDDQWLFWVGPFIGAAIAAFYHN 886
            CAGV          G + + + +G  + +  Y   GISG H+NPA+T  L            +Y+ AQ +GAI G  ++      ++      A +L   +STG         + +E+IGTFVLV  + +         +     L PL +GF +  + ++    TG  INPAR LG  + +            W   W+  VGP +G +    ++N
Sbjct:   22 CAGVNLKKSLSFQSGWIVVVFGWGLGVAMAAYAVGGISGAHLNPALTIALAFVGDFPWKEVPVYIAAQMIGAIIGAVIIYLHYLPHWKSTDDPAAKLG-VFSTGPSIPHTFANVLSEVIGTFVLVLGILAI------GANQFTEGLNPLIVGFLIVAIGISLGGTTGYAINPARDLGPRIAHAFLPIPGKGSSNWKYAWVPVVGPILGGSFGGVFYN 231          
BLAST of FC877840 vs. ExPASy Swiss-Prot
Match: GLPF_STRPN (Glycerol uptake facilitator protein OS=Streptococcus pneumoniae GN=glpF PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 7.449e-14
Identity = 64/198 (32.32%), Postives = 95/198 (47.98%), Query Frame = 2
Query:  320 GILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTG-------VGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIY------NK-DKAWDDQWLFWVGPFIGAAIA 871
            G + I   +G  + V V+ +  +S  ++NPAVT G+ L   +     + Y++AQ  GA+ G  LV    K +Y       N LA  +STG         L +EI+GTFVLV T+F+       A       +    +G  +  + L+    TG  +NPAR LG  +++      NK D  W   W+  VGP IGAA+A
Sbjct:   37 GWIVITMGWGIAVAVAVFVSGKLSPAYLNPAVTIGVALKGGLPWASVLPYILAQFAGAMLGQILVWLQFKPHYEAEENAGNILAT-FSTGPAIKDTVSNLISEILGTFVLVLTIFALGLYDFQAG------IGTFAVGTLIVGIGLSLGGTTGYALNPARDLGPRIMHSILPIPNKGDGDWSYAWIPVVGPVIGAALA 227          
BLAST of FC877840 vs. ExPASy Swiss-Prot
Match: PDUF_SALTY (Propanediol diffusion facilitator OS=Salmonella typhimurium GN=pduF PE=2 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 9.729e-14
Identity = 69/223 (30.94%), Postives = 99/223 (44.39%), Query Frame = 2
Query:  311 AGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGAN---------ELADGYSTGVGLA--------AEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFW-----------VGPFIGA-AIAAFYHNFI 892
            A +G+  I   +G  I + VY TAGISGGH+NPAVT  L+L       + + Y++AQ  GA  G  L      S +T +    +         +LA  +ST    A         E++ T +L+  + + TD            LAPL IG  V ++  +T P+TG  +NPAR  G   ++     W +  +             V P IGA A AA Y  FI
Sbjct:   35 ASLGLWEICIIWGLGISLAVYLTAGISGGHLNPAVTIALWLFACFPKQKVLPYIIAQFAGAFGGALLAYVLYSSLFTEFETAHHMVRGSVESLQLASIFSTYPAAALNVWQAALVEVVITSILMGMIMALTDDGNGIPKG---PLAPLLIGILVAVIGASTGPLTGFAMNPARDFGPK-LFTWLAGWGNMAMSGGREIPYFIVPIVAPVIGACAGAAIYRYFI 253          
BLAST of FC877840 vs. ExPASy Swiss-Prot
Match: GLPF_THEMA (Probable glycerol uptake facilitator protein OS=Thermotoga maritima GN=glpF PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.271e-13
Identity = 63/204 (30.88%), Postives = 90/204 (44.12%), Query Frame = 2
Query:  320 GILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELA---DGYST---GVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIY-------NKDKAWDDQWLFWVGPFIGAAIAAFYHNFI 892
            G + I   +G  + + VY    ISG HINPAVT GL    +    +   Y+ +Q LGA  G  LV      ++        +LA    G +    G  L  EIIGT VL+  V      K +        L PL +GF V+ + L+    TG  INPAR  G  + +        +D  W   W+  +GP IG  + A  +N++
Sbjct:   36 GWIVITTGWGLAVAMSVYLVGRISGAHINPAVTIGLAFIGQFPWSKVPGYIFSQILGAFVGAILVYLTYLPHWKETDDPDAKLAVFCTGPAVRKYGANLLTEIIGTMVLLMGVLGIGANKLA------DGLNPLLVGFLVWSIGLSLGGPTGYAINPARDFGPRLAHAILPIPGKRDSDWSYSWVPIIGPIIGGILGASLYNWL 233          
BLAST of FC877840 vs. ExPASy Swiss-Prot
Match: GLPF_STRCO (Probable glycerol uptake facilitator protein OS=Streptomyces coelicolor GN=glpF PE=2 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 1.660e-13
Identity = 69/229 (30.13%), Postives = 99/229 (43.23%), Query Frame = 2
Query:  320 GILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRY----------GG----------------GANELADGYSTG-------VGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIY------NKDKA-WDDQWLFWVGPFIGAAIAAFYHN 886
            G L IA+ +G  +    Y +  +SG H+NPAVT G+ + +         Y   Q LGA+ G  LV     +YY ++          GG                GA  +   +STG         LA EIIGTFVL+  + +      +   + + +L  L  GF V  + L+    TG  INP R LG  +++      NK  + W   W+  VGP IG AIA   +N
Sbjct:   39 GWLAIAFGWGFAVMTAAYISGPLSGAHLNPAVTVGIAI-KDGDWSNTPTYFAGQLLGAMIGAVLVWV---AYYGQFQAHLTDREIVGGPGAQDTTAKSVEAQEKGAGPVLGVFSTGPEIRHTVQNLATEIIGTFVLLLAILT---QGLNDEGNGLGILGALITGFVVVSIGLSLGGPTGYAINPVRDLGPRIVHALLPLPNKGGSDWSYAWIPVVGPLIGGAIAGGVYN 260          
BLAST of FC877840 vs. ExPASy Swiss-Prot
Match: YFF4_YEAST (Uncharacterized membrane protein YFL054C OS=Saccharomyces cerevisiae GN=YFL054C PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.831e-13
Identity = 69/213 (32.39%), Postives = 92/213 (43.19%), Query Frame = 2
Query:  326 LGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAA--------------EIIGTFVLVYTVFSATDPKRSARDSHVPV---LAPLPIGFAVFMVHLATIPITGTGINPARSLG----AAVIYNKDKA-----WDDQWLFWVGPFIGAAIAAFYHN 886
            L  AW FG M+ V  Y   GISGGHINPAVT  + + RK    +  +Y+VAQ +GA  G  +   +  S  T + GG +      +TG  L                E IG  +LV  + +  D      DS+ P    +  L IGF V  + +A    T   INPAR LG    A++I     A     W   W  W GP  G    A  ++
Sbjct:  384 LSFAWGFGCMLGV--YVAGGISGGHINPAVTISMAIFRKFPWKKVPVYIVAQIIGAYFGGAMAYGYFWSSITEFEGGPHIRTT--ATGACLFTDPKSYVTWRNAFFDEFIGASILVGCLMALLD------DSNAPPGNGMTALIIGFLVAAIGMALGYQTSFTINPARDLGPRIFASMIGYGPHAFHLTHWWWTWGAWGGPIAGGIAGALIYD 586          
BLAST of FC877840 vs. ExPASy Swiss-Prot
Match: NIP22_MAIZE (Aquaporin NIP2-2 OS=Zea mays GN=NIP2-2 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.831e-13
Identity = 57/194 (29.38%), Postives = 90/194 (46.39%), Query Frame = 2
Query:  326 LGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVG-----LAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHNFI 892
            LG + A G ++ V++Y T  ISG H+NPAVT      R    ++   Y  AQ  GA+    ++KA                  G +T  G     L  EI+ TF +++   +     R+     V  LA L +G AV +  +   P++G  +NPAR+L  AV  N    +   W++++GP IG    A+ + +I
Sbjct:   85 LGQSVAGGLIVTVMIYATGHISGAHMNPAVTLSFACFRHFPWIQVPFYWAAQFTGAMCAAFVLKAVLHPI----------AVIGTTTPSGPHWHALLIEIVVTFNMMFVTCAVATDSRA-----VGELAGLAVGSAVCITSIFAGPVSGGSMNPARTLAPAVASN---VFTGLWIYFLGPVIGTLSGAWVYTYI 260          
The following BLAST results are available for this feature:
BLAST of FC877840 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 195
Match NameE-valueIdentityDescription
NIP41_ARATH3.344e-1429.10Putative aquaporin NIP4-1 OS=Arabidopsis thaliana ... [more]
NIP31_ARATH3.344e-1426.97Aquaporin NIP3-1 OS=Arabidopsis thaliana GN=NIP3-1... [more]
NIP23_MAIZE3.344e-1429.15Aquaporin NIP2-3 OS=Zea mays GN=NIP2-3 PE=2 SV=1[more]
GLPF_BACSU5.704e-1426.73Glycerol uptake facilitator protein OS=Bacillus su... [more]
GLPF_STRPN7.449e-1432.32Glycerol uptake facilitator protein OS=Streptococc... [more]
PDUF_SALTY9.729e-1430.94Propanediol diffusion facilitator OS=Salmonella ty... [more]
GLPF_THEMA1.271e-1330.88Probable glycerol uptake facilitator protein OS=Th... [more]
GLPF_STRCO1.660e-1330.13Probable glycerol uptake facilitator protein OS=St... [more]
YFF4_YEAST2.831e-1332.39Uncharacterized membrane protein YFL054C OS=Saccha... [more]
NIP22_MAIZE2.831e-1329.38Aquaporin NIP2-2 OS=Zea mays GN=NIP2-2 PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionIC0AAA99CF07RM1 IVIA1 Citrus clementina cDNA clone IC0AAA99CF07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877840 ID=FC877840; Name=FC877840; organism=Citrus clementina; type=EST; length=924bp
AAGGCTTCTCTCTCGTTGTGCTTGTGGCTTTGCAGTGCTCTCAGTTTTCT
CTGTTTCTCTCCAAATCATTGTTACTGGTTTTCCAATGGCGAAGGACACT
GGGGTGGCAGAGCACGGCTCATATTCAGCCAAGGACTACACGGACCCACC
GCCGGAGCCGCTATTCGACGCCGTGGAGCTGACCAAATGGTCATTCTACA
GAGCCTTGATAGCTGAGTTCATAGCAACCCTGCTCTTTCTTTACGTCACT
GTCTTGACTGTCATTGGCTACAAAAGCCAGACCGATCCCGCCAAGAACGT
CGACGGCTGTGCCGGCGTCGGCATCCTCGGTATCGCCTGGGCCTTCGGTG
GCATGATCTTTGTCCTCGTTTACTGCACCGCCGGTATCTCAGGTGGTCAC
ATTAACCCGGCAGTGACGTTCGGACTATTCTTGGCCCGCAAGGTGTCGTT
GGTCCGTGCTGTGATGTACATGGTGGCGCAGTGCCTTGGTGCAATCTCCG
GTGTTGGGTTGGTCAAGGCTTTCCAAAAATCTTACTACACAAGGTACGGA
GGTGGGGCCAACGAGCTGGCCGATGGGTACAGCACAGGCGTTGGATTGGC
CGCCGAGATCATCGGCACCTTTGTGTTGGTTTACACTGTCTTCTCGGCCA
CTGATCCCAAGAGAAGCGCCAGAGACTCCCATGTCCCCGTTTTGGCACCG
CTCCCCATTGGATTTGCTGTGTTCATGGTACACTTGGCCACAATCCCAAT
CACTGGCACTGGCATTAACCCAGCAAGGAGTCTCGGGGCCGCTGTTATTT
ACAACAAGGACAAGGCTTGGGATGATCAATGGCTCTTCTGGGTTGGACCC
TTCATCGGTGCAGCAATTGCGGCTTTCTACCACAATTTCATCTGAGAGCT
GGAGCTGTCAAGGCTCTTGGGTTC
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