FC877840

Overview
NameFC877840
Unique NameFC877840
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length924
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC877840 vs. ExPASy Swiss-Prot
Match: YI7H_SCHPO (Uncharacterized membrane protein C977.17 OS=Schizosaccharomyces pombe GN=SPAC977.17 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.519e-11
Identity = 72/265 (27.17%), Postives = 98/265 (36.98%), Query Frame = 2
Query:  125 SAKDYTDPPPEPLFD----------AVELTKWSFYRALIAEFIAXXXXXXXXXXXXIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAA--------------EIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVG 847
            S++D T PP E + +           + L  W   R    E  A            +G   Q        G      L  AW FG M+ V  Y   GISGGH+NPAVT  L + RK    +  +Y+  Q  GA  G  L   +  S  T + GG +      +TG  L                E IGT VLV  +F+  D   S     +       +G  +  + +A    T   +NPAR LG  +      AW      W+G
Sbjct:  272 SSQDITMPPNEIIAEESLDSGSDTETLYLNYWCKIRHFFREGFAEFLGTLVLVVFGVGSNLQATVTNGAGG--SFESLSFAWGFGCMLGV--YIAGGISGGHVNPAVTISLAIFRKFPWYKVPIYIFFQIWGAFFGGALAYGYHWSSITEFEGGKDIRTP--ATGGCLYTNPKPYVTWRNAFFDEFIGTAVLVGCLFAILDDTNSPPTQGMTAFI---VGLLIAAIGMALGYQTSFTLNPARDLGPRMF-----AW------WIG 516          
BLAST of FC877840 vs. ExPASy Swiss-Prot
Match: GLPF_SHIFL (Glycerol uptake facilitator protein OS=Shigella flexneri GN=glpF PE=3 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 4.519e-11
Identity = 59/216 (27.31%), Postives = 94/216 (43.52%), Query Frame = 2
Query:  326 LGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKA--------FQKSYYTRYGGGAN-ELADGYST--------GVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQW------------LFWV---GPFIGAAIAAF 877
            + + W  G  + + +Y TAG+SG H+NPAVT  L+L       + + ++V+Q  GA     LV          F+++++   G   + +LA  +ST            A E++ T +L+  + + TD            LAPL IG  + ++  +  P+TG  +NPAR  G  V      AW   W             F V    P +GA + AF
Sbjct:   44 ISVIWGLG--VAMAIYLTAGVSGAHLNPAVTIALWLFACFDKRKVIPFIVSQVAGAFCAAALVYGLYYNLFFDFEQTHHIVRGSVESVDLAGTFSTYPNPHINFVQAFAVEMVITAILMGLILALTDDGNGVPRG---PLAPLLIGLLIAVIGASMGPLTGFAMNPARDFGPKVF-----AWLAGWGNVAFTGGRDIPYFLVPLFSPIVGAIVGAF 249          
BLAST of FC877840 vs. ExPASy Swiss-Prot
Match: GLPF_PSEAE (Glycerol uptake facilitator protein OS=Pseudomonas aeruginosa GN=glpF PE=3 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 4.519e-11
Identity = 50/175 (28.57%), Postives = 76/175 (43.43%), Query Frame = 2
Query:  314 GVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGAN---------ELADGYST--------GVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLG 787
            G+  + I W  G  + + +Y +AG+SG H+NPAV+  L+L       +   Y+ AQ  GA     LV     S +  +    N          LA  +ST        G     E++ T +L+  + + TD            LAPL IG  + ++  A  P+TG  +NPAR  G
Sbjct:   43 GLWEISIIWGVG--VSMAIYLSAGVSGAHLNPAVSIALWLFAGFEGRKLPFYITAQVAGAFCAAALVYTLYSSLFIEFEQAQNIVRGSQDSLALASVFSTYPHPALSVGQAFLVEVVITAILMAVIMALTDDGNGLPRG---PLAPLLIGLLIAVIGSAMGPLTGFAMNPARDFG 212          
BLAST of FC877840 vs. ExPASy Swiss-Prot
Match: AQP9_HUMAN (Aquaporin-9 OS=Homo sapiens GN=AQP9 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.519e-11
Identity = 57/220 (25.91%), Postives = 91/220 (41.36%), Query Frame = 2
Query:  320 GILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGG--------------ANELADGYSTGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVP-VLAPLPIGFAVFMVHLATIPITGTGINPARSL-----------GAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHNFI*EL 901
            G++ I   F   + + +Y   G+SGGHINPAV+  + L  ++   +   Y+ AQ LGA  G   V          + GG              A   A   S     A +++ T +L+  VF+  D    +R+   P  L P+ IG  + ++  +    +G  +NPAR L           G  V    +  W   W+  VGP +GA I    +  + E+
Sbjct:   56 GVITINVGFSMAVAMAIYVAGGVSGGHINPAVSLAMCLFGRMKWFKLPFYVGAQFLGAFVGAATVFGIYYDGLMSFAGGKLLIVGENATAHIFATYPAPYLSLANAFADQVVATMILLIIVFAIFD----SRNLGAPRGLEPIAIGLLIIVIASSLGLNSGCAMNPARDLSPRLFTALAGWGFEVFRAGNNFW---WIPVVGPLVGAVIGGLIYVLVIEI 268          
BLAST of FC877840 vs. ExPASy Swiss-Prot
Match: SIP12_MAIZE (Aquaporin SIP1-2 OS=Zea mays GN=SIP1-2 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.903e-11
Identity = 44/177 (24.86%), Postives = 75/177 (42.37%), Query Frame = 2
Query:  353 MIFVLVYCTAGISGGHINPAVTFGLFLA--RKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAF 877
            ++FV       + G   NP      + A     SL    + + AQ  GA+ G   +     + Y    GG +   D ++   G  AE++ TFV+   V          +    P++    I      + L+    TG  +NPA + G A + N+   W+  +++W+ PFIGA +AA+
Sbjct:   57 LLFVFNILCDALGGASFNPTGVAAFYAAGVTSPSLFSIALRLPAQAAGAVGGALAISELMPAQYRHMLGGPSLKVDPHT---GAGAELVLTFVITLAVLLII-----VKGPRNPIIKTWMISICTLCLVLSGAAYTGPSMNPANAFGWAYVNNRHNTWEQFYVYWICPFIGAILAAW 225          
The following BLAST results are available for this feature:
BLAST of FC877840 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 195
Match NameE-valueIdentityDescription
YI7H_SCHPO4.519e-1127.17Uncharacterized membrane protein C977.17 OS=Schizo... [more]
GLPF_SHIFL4.519e-1127.31Glycerol uptake facilitator protein OS=Shigella fl... [more]
GLPF_PSEAE4.519e-1128.57Glycerol uptake facilitator protein OS=Pseudomonas... [more]
AQP9_HUMAN4.519e-1125.91Aquaporin-9 OS=Homo sapiens GN=AQP9 PE=1 SV=1[more]
SIP12_MAIZE5.903e-1124.86Aquaporin SIP1-2 OS=Zea mays GN=SIP1-2 PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionIC0AAA99CF07RM1 IVIA1 Citrus clementina cDNA clone IC0AAA99CF07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877840 ID=FC877840; Name=FC877840; organism=Citrus clementina; type=EST; length=924bp
AAGGCTTCTCTCTCGTTGTGCTTGTGGCTTTGCAGTGCTCTCAGTTTTCT
CTGTTTCTCTCCAAATCATTGTTACTGGTTTTCCAATGGCGAAGGACACT
GGGGTGGCAGAGCACGGCTCATATTCAGCCAAGGACTACACGGACCCACC
GCCGGAGCCGCTATTCGACGCCGTGGAGCTGACCAAATGGTCATTCTACA
GAGCCTTGATAGCTGAGTTCATAGCAACCCTGCTCTTTCTTTACGTCACT
GTCTTGACTGTCATTGGCTACAAAAGCCAGACCGATCCCGCCAAGAACGT
CGACGGCTGTGCCGGCGTCGGCATCCTCGGTATCGCCTGGGCCTTCGGTG
GCATGATCTTTGTCCTCGTTTACTGCACCGCCGGTATCTCAGGTGGTCAC
ATTAACCCGGCAGTGACGTTCGGACTATTCTTGGCCCGCAAGGTGTCGTT
GGTCCGTGCTGTGATGTACATGGTGGCGCAGTGCCTTGGTGCAATCTCCG
GTGTTGGGTTGGTCAAGGCTTTCCAAAAATCTTACTACACAAGGTACGGA
GGTGGGGCCAACGAGCTGGCCGATGGGTACAGCACAGGCGTTGGATTGGC
CGCCGAGATCATCGGCACCTTTGTGTTGGTTTACACTGTCTTCTCGGCCA
CTGATCCCAAGAGAAGCGCCAGAGACTCCCATGTCCCCGTTTTGGCACCG
CTCCCCATTGGATTTGCTGTGTTCATGGTACACTTGGCCACAATCCCAAT
CACTGGCACTGGCATTAACCCAGCAAGGAGTCTCGGGGCCGCTGTTATTT
ACAACAAGGACAAGGCTTGGGATGATCAATGGCTCTTCTGGGTTGGACCC
TTCATCGGTGCAGCAATTGCGGCTTTCTACCACAATTTCATCTGAGAGCT
GGAGCTGTCAAGGCTCTTGGGTTC
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