FC877840

Overview
NameFC877840
Unique NameFC877840
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length924
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC877840 vs. ExPASy Swiss-Prot
Match: AQPZ_GLOVI (Aquaporin Z OS=Gloeobacter violaceus GN=aqpZ PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 4.069e-28
Identity = 73/203 (35.96%), Postives = 117/203 (57.64%), Query Frame = 2
Query:  314 GVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVK--AFQKSYYTRYGGGAN-----ELADGYSTGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAA-FYHNFI*E 898
            G+G  G++ AFG  +  + +    ISG HINPAV+ GL+ A++      + Y+ AQ LG I+G G++   A  K+ ++  GG A+         GY+    L  E++ TF+ +  +  +TD +R+ +       AP+ IG ++ ++HL +IP+T T +NPARS G A ++  D A  + WLFW+ P +GAA+A  FYH F+ E
Sbjct:   35 GIGFAGVSLAFGLTLLTMAFAIGHISGCHINPAVSIGLWAAKRFPATELLPYIAAQVLGGIAGAGVLYLIAGGKAGFSLSGGFASNGYGLHSPGGYTLLACLVCEVVMTFMFLMIILGSTD-RRAPKG-----FAPIAIGLSLTLIHLISIPVTNTSVNPARSTGPA-LFVGDWAIAELWLFWLAPIVGAALAGLFYHAFLDE 230          
BLAST of FC877840 vs. ExPASy Swiss-Prot
Match: TIP32_ARATH (Probable aquaporin TIP3-2 OS=Arabidopsis thaliana GN=TIP3-2 PE=2 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 5.314e-28
Identity = 84/243 (34.57%), Postives = 121/243 (49.79%), Query Frame = 2
Query:  170 AVELTKWSFYRALIAEFIAXXXXXXXXXXXXIGY-KSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLVYTVFS-ATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHNFI 892
            A E T     RA +AEF++            +   K   D A +       G++ +A A    +F  V     +SGGH+NPAVTF   +  ++S++RA+ Y VAQ +GAI    L++                +A G S   GL  EII TF LVY V+S A DPKR +    + ++APL IG  V    L   P  G  +NPAR+ G A++      W + W++WVGPFIG A+AA  + ++
Sbjct:   14 ADEATHPDSIRATLAEFLSTFVFVFAGEGSILALDKLYWDTAAHTGTNTPGGLVLVALAHALALFAAVSAAINVSGGHVNPAVTFAALIGGRISVIRAIYYWVAQLIGAILACLLLRLATNGLRP----VGFHVASGVSELHGLLMEIILTFALVYVVYSTAIDPKRGS----IGIIAPLAIGLIVGANILVGGPFDGASMNPARAFGPALV---GWRWSNHWIYWVGPFIGGALAALIYEYM 245          
BLAST of FC877840 vs. ExPASy Swiss-Prot
Match: TIP31_ARATH (Aquaporin TIP3-1 OS=Arabidopsis thaliana GN=TIP3-1 PE=2 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 6.940e-28
Identity = 74/192 (38.54%), Postives = 105/192 (54.69%), Query Frame = 2
Query:  320 GILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLVYTVFSA-TDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHNFI 892
            G++ +A A    +F  V     +SGGH+NPAVTFG  +  +V+ +RA+ Y +AQ LGAI    L++                LA G     GL  EII TF LVY V+S   DPKR +    + ++APL IG  V    L   P +G  +NPAR+ G A++      W D W++WVGPFIG+A+AA  + ++
Sbjct:   65 GLILVALAHAFALFAAVSAAINVSGGHVNPAVTFGALVGGRVTAIRAIYYWIAQLLGAILACLLLRLTTNGMRP----VGFRLASGVGAVNGLVLEIILTFGLVYVVYSTLIDPKRGS----LGIIAPLAIGLIVGANILVGGPFSGASMNPARAFGPALV---GWRWHDHWIYWVGPFIGSALAALIYEYM 245          
BLAST of FC877840 vs. ExPASy Swiss-Prot
Match: TIP1_MEDSA (Probable aquaporin TIP-type OS=Medicago sativa GN=MCP1 PE=2 SV=2)

HSP 1 Score: 124.79 bits (312), Expect = 6.940e-28
Identity = 84/241 (34.85%), Postives = 123/241 (51.04%), Query Frame = 2
Query:  176 ELTKWSFYRALIAEFIAXXXXXXXXXXXXIGYKSQTDPAKNVDGCAG-VGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLVYTVF-SATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHNFI 892
            E T     +A +AEFI+            I Y   T+     DG A   G++  + A    +FV V   A ISGGH+NPAV FG F+   ++L+R ++Y++AQ LG+I    L+     S    +G     L++G   G  L  EI+ TF LVYTV+ +A DPK+     ++ ++AP+ IGF V    L     TG  +NPA S G AV+     +W + W++W GP IG  IA   +  +
Sbjct:   13 EATHPDTLKAGLAEFISTFIFVFAGSGSGIAYNKLTN-----DGAATPAGLISASIAHAFALFVAVSVGANISGGHVNPAV-FGAFVGGNITLLRGIVYIIAQLLGSIVCSALLVFVTASSVPAFG-----LSEGVGVGPALVLEIVMTFGLVYTVYATAVDPKK----GNIGIIAPIAIGFIVGANILVGGAFTGASMNPAVSFGPAVV---SWSWSNHWVYWAGPLIGGGIAGLVYEVL 235          
BLAST of FC877840 vs. ExPASy Swiss-Prot
Match: AQPZ_BRUSU (Aquaporin Z OS=Brucella suis GN=aqpZ PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 6.940e-28
Identity = 76/193 (39.38%), Postives = 103/193 (53.37%), Query Frame = 2
Query:  314 GVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGL--VKAFQKSYYTRYG---GGANELA-DGYSTGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAA 874
            G+G LG+A AFG  +  + Y   GISGGH NPAV+  L +A ++     + Y VAQ LGAI+   +  V A  K  ++  G    G  EL+  GYS   GL  EII T   +  +  +T     A        AP+ IGF + ++HL +IP+T T +NPARS G A ++    A    WLFWV P +GA I A
Sbjct:   33 GIGFLGVALAFGLTVLTMAYAVGGISGGHFNPAVSLSLTVAGRLPAKDLIPYWVAQVLGAIATAAILYVIASGKDGFSAGGLASNGYGELSPGGYSMMAGLLIEIILTAFFIIIILGSTSSLAPAG------FAPIAIGFGLTLIHLVSIPVTNTSVNPARSTGVA-LFADTAALSQLWLFWVAPLVGAVIGA 218          
BLAST of FC877840 vs. ExPASy Swiss-Prot
Match: TIP32_MAIZE (Aquaporin TIP3-2 OS=Zea mays GN=TIP3-2 PE=2 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 9.064e-28
Identity = 80/236 (33.90%), Postives = 115/236 (48.73%), Query Frame = 2
Query:  200 RALIAEFIAXXXXXXXXXXXXIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGAN----ELADGYSTGVGLAAEIIGTFVLVYTVF-SATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHNFI 892
            RA I+EFIA            +           +    G+  + +A A G  + V V     +SGGH+NPAVTFG  +  +VSLVRAV+Y  AQ LGA++   L++           GGA      LA G   G  +  E + TF  VY  + +  DPKR     H+  +APL +GF +    LA  P  G G+NPAR  G A++      W   W++W+GPF+GA +A   + ++
Sbjct:   28 RAAISEFIATAIFVFAAEGSVLSLGKMYHDHSTISTAGGLVAVALAHALG--LAVAVAVAVNVSGGHVNPAVTFGALVGGRVSLVRAVLYWAAQLLGAVAATLLLRLAT--------GGARPPGFALASGVGDGHAVLLEAVMTFGFVYAYYATVVDPKR----GHLGTIAPLAVGFLLGANVLAGGPFDGAGMNPARVFGPALV---GWRWRHHWVYWLGPFLGAGLAGLVYEYL 246          
BLAST of FC877840 vs. ExPASy Swiss-Prot
Match: TIP22_ORYSJ (Probable aquaporin TIP2-2 OS=Oryza sativa subsp. japonica GN=TIP2-2 PE=2 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 9.064e-28
Identity = 84/237 (35.44%), Postives = 119/237 (50.21%), Query Frame = 2
Query:  200 RALIAEFIAXXXXXXXXXXXXIGYKSQT-----DPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLVYTVF-SATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHNFI 892
            +A +AEFI+            I Y   T     DPA         G++ +A   G  +FV V   A ISGGH+NPAVTFGL L  +++++  V Y +AQ LGAI G  LV+         +G        G     G+  EII TF LVYTV+ +A DPK+ +    +  +AP+ IGF V    L   P +G  +NPARS G AV       + + W++WVGP +G  +A   + ++
Sbjct:   20 KAYVAEFISTLVFVFAGVGSAIAYTKLTGGAPLDPA---------GLVAVAVCHGFGLFVAVAIGANISGGHVNPAVTFGLALGGQITILTGVFYWIAQLLGAIVGAVLVQFCTGVATPTHG------LSGVGAFEGVVMEIIVTFGLVYTVYATAADPKKGS----LGTIAPIAIGFIVGANILVAGPFSGGSMNPARSFGPAVASGD---YTNIWIYWVGPLVGGGLAGLVYRYV 234          
BLAST of FC877840 vs. ExPASy Swiss-Prot
Match: AQP2_MOUSE (Aquaporin-2 OS=Mus musculus GN=Aqp2 PE=2 SV=2)

HSP 1 Score: 124.405 bits (311), Expect = 9.064e-28
Identity = 82/239 (34.31%), Postives = 117/239 (48.95%), Query Frame = 2
Query:  176 ELTKWSFYRALIAEFIAXXXXXXXXXXXXIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHNFI 892
            EL   +F RA++AEF+A            + + S               +L IA AFG  I  LV     +SG HINPAVT    +   VS +RA  Y+ AQ LGA++G  ++         R     N L +  + G  +  E+  T  LV  +F++TD +RS           L IGF+V + HL  I  TG  +NPARSL  AV+  K   +DD W+FW+GP +GA I +  +N++
Sbjct:    3 ELRSIAFSRAVLAEFLATLLFVFFGLGSALQWASSPP-----------SVLQIAVAFGLGIGTLVQALGHVSGAHINPAVTVACLVGCHVSFLRAAFYVAAQLLGAVAGAAILHEI-TPVEIRGDLAVNALHNNATAGQAVTVELFLTMQLVLCIFASTDERRSDNLGS----PALSIGFSVTLGHLLGIYFTGCSMNPARSLAPAVVTGK---FDDHWVFWIGPLVGAVIGSLLYNYL 222          
BLAST of FC877840 vs. ExPASy Swiss-Prot
Match: TIP21_ARATH (Aquaporin TIP2-1 OS=Arabidopsis thaliana GN=TIP2-1 PE=1 SV=2)

HSP 1 Score: 123.635 bits (309), Expect = 1.546e-27
Identity = 87/232 (37.50%), Postives = 120/232 (51.72%), Query Frame = 2
Query:  200 RALIAEFIAXXXXXXXXXXXXIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGA---NELADGYSTGVGLAAEIIGTFVLVYTVF-SATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYH 883
            RA +AEFI+            I Y   T  A         G++ IA   G  +FV V   A ISGGH+NPAVTFGL +  +++++  V Y +AQ LG+ +   L+K     Y T  GG A   + +A G  +  G+  EII TF LVYTV+ +A DPK+ +    +  +APL IG  V    LA  P +G  +NPARS G AV       +   W++WVGP IG  +A   +
Sbjct:   19 RAYLAEFISTLLFVFAGVGSAIAYAKLTSDA----ALDTPGLVAIAVCHGFALFVAVAIGANISGGHVNPAVTFGLAVGGQITVITGVFYWIAQLLGSTAACFLLK-----YVT--GGLAVPTHSVAAGLGSIEGVVMEIIITFALVYTVYATAADPKKGS----LGTIAPLAIGLIVGANILAAGPFSGGSMNPARSFGPAVAAGD---FSGHWVYWVGPLIGGGLAGLIY 232          
BLAST of FC877840 vs. ExPASy Swiss-Prot
Match: MIP_RABIT (Lens fiber major intrinsic protein OS=Oryctolagus cuniculus GN=MIP PE=2 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.546e-27
Identity = 79/239 (33.05%), Postives = 121/239 (50.63%), Query Frame = 2
Query:  176 ELTKWSFYRALIAEFIAXXXXXXXXXXXXIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHNFI 892
            EL   SF+RA+ AEF A            +G   +  P         + +L +A AFG  +  LV     ISG H+NPAVTF   +  ++SL+RA+ YM AQ LGA++G  ++ +   +   R     N L  G S G     EI  T   V  +F+  D +R+ R   V     L +GF++ + HL  +  TG G+NPARS   A++    + + + W++WVGP IG  +A+  ++F+
Sbjct:    3 ELRSASFWRAIFAEFFATLFYVFFG----LGASLRWAPGP-------LHVLQVALAFGLALATLVQAVGHISGAHVNPAVTFAFLVGSQMSLLRAICYMAAQLLGAVAGAAVLYSVTPA-AVRGNLALNTLHPGVSLGQATTVEIFLTLQFVLCIFATYDERRNGRLGSV----ALAVGFSLTLGHLFGMYYTGAGMNPARSFAPAIL---TRNFTNHWVYWVGPIIGGGLASLLYDFL 222          
The following BLAST results are available for this feature:
BLAST of FC877840 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 195
Match NameE-valueIdentityDescription
AQPZ_GLOVI4.069e-2835.96Aquaporin Z OS=Gloeobacter violaceus GN=aqpZ PE=3 ... [more]
TIP32_ARATH5.314e-2834.57Probable aquaporin TIP3-2 OS=Arabidopsis thaliana ... [more]
TIP31_ARATH6.940e-2838.54Aquaporin TIP3-1 OS=Arabidopsis thaliana GN=TIP3-1... [more]
TIP1_MEDSA6.940e-2834.85Probable aquaporin TIP-type OS=Medicago sativa GN=... [more]
AQPZ_BRUSU6.940e-2839.38Aquaporin Z OS=Brucella suis GN=aqpZ PE=3 SV=1[more]
TIP32_MAIZE9.064e-2833.90Aquaporin TIP3-2 OS=Zea mays GN=TIP3-2 PE=2 SV=1[more]
TIP22_ORYSJ9.064e-2835.44Probable aquaporin TIP2-2 OS=Oryza sativa subsp. j... [more]
AQP2_MOUSE9.064e-2834.31Aquaporin-2 OS=Mus musculus GN=Aqp2 PE=2 SV=2[more]
TIP21_ARATH1.546e-2737.50Aquaporin TIP2-1 OS=Arabidopsis thaliana GN=TIP2-1... [more]
MIP_RABIT1.546e-2733.05Lens fiber major intrinsic protein OS=Oryctolagus ... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA99CF07RM1 IVIA1 Citrus clementina cDNA clone IC0AAA99CF07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877840 ID=FC877840; Name=FC877840; organism=Citrus clementina; type=EST; length=924bp
AAGGCTTCTCTCTCGTTGTGCTTGTGGCTTTGCAGTGCTCTCAGTTTTCT
CTGTTTCTCTCCAAATCATTGTTACTGGTTTTCCAATGGCGAAGGACACT
GGGGTGGCAGAGCACGGCTCATATTCAGCCAAGGACTACACGGACCCACC
GCCGGAGCCGCTATTCGACGCCGTGGAGCTGACCAAATGGTCATTCTACA
GAGCCTTGATAGCTGAGTTCATAGCAACCCTGCTCTTTCTTTACGTCACT
GTCTTGACTGTCATTGGCTACAAAAGCCAGACCGATCCCGCCAAGAACGT
CGACGGCTGTGCCGGCGTCGGCATCCTCGGTATCGCCTGGGCCTTCGGTG
GCATGATCTTTGTCCTCGTTTACTGCACCGCCGGTATCTCAGGTGGTCAC
ATTAACCCGGCAGTGACGTTCGGACTATTCTTGGCCCGCAAGGTGTCGTT
GGTCCGTGCTGTGATGTACATGGTGGCGCAGTGCCTTGGTGCAATCTCCG
GTGTTGGGTTGGTCAAGGCTTTCCAAAAATCTTACTACACAAGGTACGGA
GGTGGGGCCAACGAGCTGGCCGATGGGTACAGCACAGGCGTTGGATTGGC
CGCCGAGATCATCGGCACCTTTGTGTTGGTTTACACTGTCTTCTCGGCCA
CTGATCCCAAGAGAAGCGCCAGAGACTCCCATGTCCCCGTTTTGGCACCG
CTCCCCATTGGATTTGCTGTGTTCATGGTACACTTGGCCACAATCCCAAT
CACTGGCACTGGCATTAACCCAGCAAGGAGTCTCGGGGCCGCTGTTATTT
ACAACAAGGACAAGGCTTGGGATGATCAATGGCTCTTCTGGGTTGGACCC
TTCATCGGTGCAGCAATTGCGGCTTTCTACCACAATTTCATCTGAGAGCT
GGAGCTGTCAAGGCTCTTGGGTTC
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