FC877853

Overview
NameFC877853
Unique NameFC877853
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length870
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC877853 vs. ExPASy Swiss-Prot
Match: RL15_MACFA (60S ribosomal protein L15 OS=Macaca fascicularis GN=RPL15 PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 2.186e-20
Identity = 45/56 (80.36%), Postives = 49/56 (87.50%), Query Frame = 3 
Query:  228 GAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQ 395
            GAYKY+ ELWRKKQSDVMRFL RVRCW+YRQ  ++ R  RPTRPDKARRLGYKAKQ
Sbjct:    2 GAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQ 57
[Close]
BLAST of FC877853 vs. ExPASy Swiss-Prot
Match: RL15_HUMAN (60S ribosomal protein L15 OS=Homo sapiens GN=RPL15 PE=1 SV=2)

HSP 1 Score: 99.7525 bits (247), Expect = 2.186e-20
Identity = 45/56 (80.36%), Postives = 49/56 (87.50%), Query Frame = 3 
Query:  228 GAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQ 395
            GAYKY+ ELWRKKQSDVMRFL RVRCW+YRQ  ++ R  RPTRPDKARRLGYKAKQ
Sbjct:    2 GAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQ 57
[Close]
BLAST of FC877853 vs. ExPASy Swiss-Prot
Match: RL15_BOVIN (60S ribosomal protein L15 OS=Bos taurus GN=RPL15 PE=2 SV=3)

HSP 1 Score: 99.7525 bits (247), Expect = 2.186e-20
Identity = 45/56 (80.36%), Postives = 49/56 (87.50%), Query Frame = 3 
Query:  228 GAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQ 395
            GAYKY+ ELWRKKQSDVMRFL RVRCW+YRQ  ++ R  RPTRPDKARRLGYKAKQ
Sbjct:    2 GAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQ 57
[Close]
BLAST of FC877853 vs. ExPASy Swiss-Prot
Match: RL15_PARDA (60S ribosomal protein L15 OS=Paramisgurnus dabryanus GN=rpl15 PE=2 SV=3)

HSP 1 Score: 98.9821 bits (245), Expect = 3.729e-20
Identity = 45/56 (80.36%), Postives = 49/56 (87.50%), Query Frame = 3 
Query:  228 GAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQ 395
            GAYKY+ ELWRKKQSDVMRFL RVRCW+YRQ  S+ R  +PTRPDKARRLGYKAKQ
Sbjct:    2 GAYKYMQELWRKKQSDVMRFLLRVRCWQYRQLSSLHRTPKPTRPDKARRLGYKAKQ 57
[Close]
BLAST of FC877853 vs. ExPASy Swiss-Prot
Match: RL15_ICTPU (60S ribosomal protein L15 OS=Ictalurus punctatus GN=rpl15 PE=2 SV=3)

HSP 1 Score: 98.9821 bits (245), Expect = 3.729e-20
Identity = 45/56 (80.36%), Postives = 49/56 (87.50%), Query Frame = 3 
Query:  228 GAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQ 395
            GAYKY+ ELWRKKQSDVMRFL RVRCW+YRQ  ++ R  RPTRPDKARRLGYKAKQ
Sbjct:    2 GAYKYMQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQ 57
[Close]
BLAST of FC877853 vs. ExPASy Swiss-Prot
Match: RL15_HYDAT (60S ribosomal protein L15 OS=Hydra attenuata GN=RPL15 PE=2 SV=2)

HSP 1 Score: 98.9821 bits (245), Expect = 3.729e-20
Identity = 45/56 (80.36%), Postives = 49/56 (87.50%), Query Frame = 3 
Query:  228 GAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQ 395
            GAYKY+ ELWRKKQSDVMRFL RVRCW+YRQ  ++ R  RPTRPDKARRLGYKAKQ
Sbjct:    2 GAYKYMQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQ 57
[Close]
BLAST of FC877853 vs. ExPASy Swiss-Prot
Match: RL15_CYPCA (60S ribosomal protein L15 OS=Cyprinus carpio GN=rpl15 PE=2 SV=3)

HSP 1 Score: 98.9821 bits (245), Expect = 3.729e-20
Identity = 45/56 (80.36%), Postives = 49/56 (87.50%), Query Frame = 3 
Query:  228 GAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQ 395
            GAYKY+ ELWRKKQSDVMRFL RVRCW+YRQ  ++ R  RPTRPDKARRLGYKAKQ
Sbjct:    2 GAYKYMQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQ 57
[Close]
BLAST of FC877853 vs. ExPASy Swiss-Prot
Match: RL15_CARAU (60S ribosomal protein L15 OS=Carassius auratus GN=rpl15 PE=2 SV=3)

HSP 1 Score: 98.9821 bits (245), Expect = 3.729e-20
Identity = 45/56 (80.36%), Postives = 49/56 (87.50%), Query Frame = 3 
Query:  228 GAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQ 395
            GAYKY+ ELWRKKQSDVMRFL RVRCW+YRQ  ++ R  RPTRPDKARRLGYKAKQ
Sbjct:    2 GAYKYMQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQ 57
[Close]
BLAST of FC877853 vs. ExPASy Swiss-Prot
Match: RL15_ANGJA (60S ribosomal protein L15 OS=Anguilla japonica GN=rpl15 PE=2 SV=3)

HSP 1 Score: 98.5969 bits (244), Expect = 4.870e-20
Identity = 45/56 (80.36%), Postives = 48/56 (85.71%), Query Frame = 3 
Query:  228 GAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQ 395
            GAYKY+ ELWRKKQSDVMRFL RVRCW+YRQ   + R  RPTRPDKARRLGYKAKQ
Sbjct:    2 GAYKYMQELWRKKQSDVMRFLLRVRCWQYRQLSGLHRAPRPTRPDKARRLGYKAKQ 57
[Close]
BLAST of FC877853 vs. ExPASy Swiss-Prot
Match: RL15_HYPNO (60S ribosomal protein L15 OS=Hypophthalmichthys nobilis GN=rpl15 PE=2 SV=3)

HSP 1 Score: 98.2117 bits (243), Expect = 6.361e-20
Identity = 45/56 (80.36%), Postives = 49/56 (87.50%), Query Frame = 3 
Query:  228 GAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQ 395
            GAYKY+ ELWRKKQS+VMRFL RVRCW+YRQ  S+ R  RPTRPDKARRLGYKAKQ
Sbjct:    2 GAYKYMQELWRKKQSNVMRFLLRVRCWQYRQLSSLHRAPRPTRPDKARRLGYKAKQ 57
The following BLAST results are available for this feature:
BLAST of FC877853 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 43
Match NameE-valueIdentityDescription
RL15_MACFA2.186e-2080.3660S ribosomal protein L15 OS=Macaca fascicularis G... [more]
RL15_HUMAN2.186e-2080.3660S ribosomal protein L15 OS=Homo sapiens GN=RPL15... [more]
RL15_BOVIN2.186e-2080.3660S ribosomal protein L15 OS=Bos taurus GN=RPL15 P... [more]
RL15_PARDA3.729e-2080.3660S ribosomal protein L15 OS=Paramisgurnus dabryan... [more]
RL15_ICTPU3.729e-2080.3660S ribosomal protein L15 OS=Ictalurus punctatus G... [more]
RL15_HYDAT3.729e-2080.3660S ribosomal protein L15 OS=Hydra attenuata GN=RP... [more]
RL15_CYPCA3.729e-2080.3660S ribosomal protein L15 OS=Cyprinus carpio GN=rp... [more]
RL15_CARAU3.729e-2080.3660S ribosomal protein L15 OS=Carassius auratus GN=... [more]
RL15_ANGJA4.870e-2080.3660S ribosomal protein L15 OS=Anguilla japonica GN=... [more]
RL15_HYPNO6.361e-2080.3660S ribosomal protein L15 OS=Hypophthalmichthys no... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA99CF10RM1 IVIA1 Citrus clementina cDNA clone IC0AAA99CF10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877853 ID=FC877853; Name=FC877853; organism=Citrus clementina; type=EST; length=870bp
AGGTGAGTTCGACGATCGAACAATGGGTACGCATTTCTCATCTCTTCTCT
ATCGCTTTCGCATATCTCATTATTAAATAATATGTAAATTAAGATCTGAA
AACATTAAGTAGCGTATGTTTGTTTCTCGCGAATTGTTCCTTCTGATTTC
AGTATTACTTTTGTTGTGATTTTATTTATTTTTATTTTTTTGGGTTTTTT
TTTTTAAATTACAAATTAAAAAAAAAAGGTGCATACAAGTACGTGTCGGA
GCTATGGAGGAAGAAGCAGTCGGATGTGATGAGGTTCTTGCAGAGGGTGA
GGTGCTGGGAGTACCGTCAGCACCCTTCCATCGTCCGCGTCACCCGTCCC
ACTCGCCCCGACAAGGCTCGCCGCTTGGGCTACAAGGCCAAGCAGGTAGG
CTAATTATTTGATTTACTGATACTTTTTTCTCTTTTGAATCAAATATGCT
GCTCATTATTTTACAGTCGTTACTCTCGTAATTCTAATGAAGTTGTAGTT
CAATGAATATGGATCTTATTCAGAAATTACAAGTATTAGGGGCCAATTTT
ATGTGAAATAGAGGTAAAATCTGTTTTTTGGTTGTATTTTTGCTTCATTA
GTGTCTGCGGTATGGGTGTTGTTTCCTGGCACAATTGTAAACCCATCAGT
TCTTATTTTCTGCTGAAGTTTAAAATCACGTCTGTCTAACTGAAAAATTG
ATGAAATAACCTAATGGTCAATATGTGTCGCTCTACGATGTGGTTACCAC
CGCTGCACCTAGGCAAGGTTTTATAGACTTTTTTTTTTATTTTAAGGCTC
TATTAATGTTCCCCCTTGCTGGTGATCTGCAGATAATGACTATGAGGAAT
TATCTTTTTGCAGGGGTATG
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