FC877853

Overview
NameFC877853
Unique NameFC877853
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length870
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC877853 vs. ExPASy Swiss-Prot
Match: RL15_QUESU (60S ribosomal protein L15 OS=Quercus suber GN=RPL15 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 5.954e-18
Identity = 43/56 (76.79%), Postives = 49/56 (87.50%), Query Frame = 3
Query:  228 GAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQ 395
            GAYKYV+E+ R+KQSDV+RFL RVRCWEYRQ   I R +RP+RPDKARRLGYKAKQ
Sbjct:    2 GAYKYVAEMERRKQSDVLRFLLRVRCWEYRQLNVIHRASRPSRPDKARRLGYKAKQ 57          
BLAST of FC877853 vs. ExPASy Swiss-Prot
Match: RL15_CHITE (60S ribosomal protein L15 OS=Chironomus tentans GN=RpL15 PE=3 SV=3)

HSP 1 Score: 91.2781 bits (225), Expect = 7.776e-18
Identity = 41/56 (73.21%), Postives = 48/56 (85.71%), Query Frame = 3
Query:  228 GAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQ 395
            GAY+YV EL+RKKQSDV+R+L RVRCW+YRQ   + R  RP+RPDKARRLGYKAKQ
Sbjct:    2 GAYRYVQELYRKKQSDVLRYLLRVRCWQYRQLTKLHRAPRPSRPDKARRLGYKAKQ 57          
BLAST of FC877853 vs. ExPASy Swiss-Prot
Match: RL15_CAEEL (60S ribosomal protein L15 OS=Caenorhabditis elegans GN=rpl-15 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 5.040e-17
Identity = 38/56 (67.86%), Postives = 47/56 (83.93%), Query Frame = 3
Query:  228 GAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQ 395
            GAYKY+ E+WRKKQSD +R+L R+R W YRQ  ++ RV RPTRP+KARRLGY+AKQ
Sbjct:    2 GAYKYMQEIWRKKQSDALRYLLRIRTWHYRQLSAVHRVPRPTRPEKARRLGYRAKQ 57          
BLAST of FC877853 vs. ExPASy Swiss-Prot
Match: RL15_ANOGA (60S ribosomal protein L15 OS=Anopheles gambiae GN=RpL15 PE=2 SV=3)

HSP 1 Score: 87.4261 bits (215), Expect = 1.123e-16
Identity = 40/56 (71.43%), Postives = 46/56 (82.14%), Query Frame = 3
Query:  228 GAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQ 395
            GAY+YV EL+RKKQSDVMR+L R+R W+YRQ     R  RP+RPDKARRLGYKAKQ
Sbjct:    2 GAYRYVQELYRKKQSDVMRYLLRIRVWQYRQMTRFHRAPRPSRPDKARRLGYKAKQ 57          
BLAST of FC877853 vs. ExPASy Swiss-Prot
Match: RL15_ORCLI (60S ribosomal protein L15 OS=Orconectes limosus GN=RPL15 PE=2 SV=3)

HSP 1 Score: 86.6557 bits (213), Expect = 1.915e-16
Identity = 39/56 (69.64%), Postives = 46/56 (82.14%), Query Frame = 3
Query:  228 GAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQ 395
            GAYKY+ E++RKKQSDVMRFL R+R W+YR    + R  RPTRP+KARRLGYKAKQ
Sbjct:    2 GAYKYMQEIYRKKQSDVMRFLLRIRAWQYRHLNKLHRAPRPTRPEKARRLGYKAKQ 57          
BLAST of FC877853 vs. ExPASy Swiss-Prot
Match: RL15_DROME (60S ribosomal protein L15 OS=Drosophila melanogaster GN=RpL15 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.915e-16
Identity = 39/56 (69.64%), Postives = 47/56 (83.93%), Query Frame = 3
Query:  228 GAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQ 395
            GAY+Y+ EL+RKKQSDVMR+L R+R W+YRQ   + R  RPTRPDKARRLGY+AKQ
Sbjct:    2 GAYRYMQELYRKKQSDVMRYLLRIRVWQYRQLTKLHRSPRPTRPDKARRLGYRAKQ 57          
BLAST of FC877853 vs. ExPASy Swiss-Prot
Match: RL15_BRUPA (60S ribosomal protein L15 (Fragment) OS=Brugia pahangi PE=3 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 2.501e-16
Identity = 36/56 (64.29%), Postives = 48/56 (85.71%), Query Frame = 3
Query:  228 GAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQ 395
            GAY+Y+ ELWRKK+S+ MR+L R+RCW+YRQ  +I RV+RPTRP+KARRLGY + +
Sbjct:    2 GAYRYMQELWRKKKSETMRYLLRIRCWQYRQLTAIHRVSRPTRPEKARRLGYLSNE 57          
BLAST of FC877853 vs. ExPASy Swiss-Prot
Match: RL15_ASPNG (60S ribosomal protein L15 OS=Aspergillus niger GN=rpl15 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.501e-16
Identity = 41/56 (73.21%), Postives = 47/56 (83.93%), Query Frame = 3
Query:  228 GAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQ 395
            GA KYV E+ +KKQSDV+RFL RVRCWE RQ  +I R +RP+RPDKARRLGYKAKQ
Sbjct:    2 GALKYVEEIQKKKQSDVIRFLLRVRCWELRQLNAIHRASRPSRPDKARRLGYKAKQ 57          
BLAST of FC877853 vs. ExPASy Swiss-Prot
Match: RL15_NEUCR (60S ribosomal protein L15 OS=Neurospora crassa GN=rpl-15 PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 7.278e-16
Identity = 41/56 (73.21%), Postives = 46/56 (82.14%), Query Frame = 3
Query:  228 GAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQ 395
            GA KY+ EL +KKQSDV+RFL RVRCWE RQ   I R +RP+RPDKARRLGYKAKQ
Sbjct:    2 GALKYLEELQKKKQSDVVRFLLRVRCWELRQLNVIHRASRPSRPDKARRLGYKAKQ 57          
BLAST of FC877853 vs. ExPASy Swiss-Prot
Match: RL15_DICDI (60S ribosomal protein L15 OS=Dictyostelium discoideum GN=rpl15-1 PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 9.505e-16
Identity = 39/56 (69.64%), Postives = 44/56 (78.57%), Query Frame = 3
Query:  228 GAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQ 395
            GAYKY+ EL++KKQSD +RFL RVRCWEYR  P   R + PTR DKARRLGYKA Q
Sbjct:    2 GAYKYLQELYKKKQSDAVRFLLRVRCWEYRNLPVCHRASHPTRVDKARRLGYKATQ 57          
The following BLAST results are available for this feature:
BLAST of FC877853 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 43
Match NameE-valueIdentityDescription
RL15_QUESU5.954e-1876.7960S ribosomal protein L15 OS=Quercus suber GN=RPL1... [more]
RL15_CHITE7.776e-1873.2160S ribosomal protein L15 OS=Chironomus tentans GN... [more]
RL15_CAEEL5.040e-1767.8660S ribosomal protein L15 OS=Caenorhabditis elegan... [more]
RL15_ANOGA1.123e-1671.4360S ribosomal protein L15 OS=Anopheles gambiae GN=... [more]
RL15_ORCLI1.915e-1669.6460S ribosomal protein L15 OS=Orconectes limosus GN... [more]
RL15_DROME1.915e-1669.6460S ribosomal protein L15 OS=Drosophila melanogast... [more]
RL15_BRUPA2.501e-1664.2960S ribosomal protein L15 (Fragment) OS=Brugia pah... [more]
RL15_ASPNG2.501e-1673.2160S ribosomal protein L15 OS=Aspergillus niger GN=... [more]
RL15_NEUCR7.278e-1673.2160S ribosomal protein L15 OS=Neurospora crassa GN=... [more]
RL15_DICDI9.505e-1669.6460S ribosomal protein L15 OS=Dictyostelium discoid... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA99CF10RM1 IVIA1 Citrus clementina cDNA clone IC0AAA99CF10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877853 ID=FC877853; Name=FC877853; organism=Citrus clementina; type=EST; length=870bp
AGGTGAGTTCGACGATCGAACAATGGGTACGCATTTCTCATCTCTTCTCT
ATCGCTTTCGCATATCTCATTATTAAATAATATGTAAATTAAGATCTGAA
AACATTAAGTAGCGTATGTTTGTTTCTCGCGAATTGTTCCTTCTGATTTC
AGTATTACTTTTGTTGTGATTTTATTTATTTTTATTTTTTTGGGTTTTTT
TTTTTAAATTACAAATTAAAAAAAAAAGGTGCATACAAGTACGTGTCGGA
GCTATGGAGGAAGAAGCAGTCGGATGTGATGAGGTTCTTGCAGAGGGTGA
GGTGCTGGGAGTACCGTCAGCACCCTTCCATCGTCCGCGTCACCCGTCCC
ACTCGCCCCGACAAGGCTCGCCGCTTGGGCTACAAGGCCAAGCAGGTAGG
CTAATTATTTGATTTACTGATACTTTTTTCTCTTTTGAATCAAATATGCT
GCTCATTATTTTACAGTCGTTACTCTCGTAATTCTAATGAAGTTGTAGTT
CAATGAATATGGATCTTATTCAGAAATTACAAGTATTAGGGGCCAATTTT
ATGTGAAATAGAGGTAAAATCTGTTTTTTGGTTGTATTTTTGCTTCATTA
GTGTCTGCGGTATGGGTGTTGTTTCCTGGCACAATTGTAAACCCATCAGT
TCTTATTTTCTGCTGAAGTTTAAAATCACGTCTGTCTAACTGAAAAATTG
ATGAAATAACCTAATGGTCAATATGTGTCGCTCTACGATGTGGTTACCAC
CGCTGCACCTAGGCAAGGTTTTATAGACTTTTTTTTTTATTTTAAGGCTC
TATTAATGTTCCCCCTTGCTGGTGATCTGCAGATAATGACTATGAGGAAT
TATCTTTTTGCAGGGGTATG
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