FC877855

Overview
NameFC877855
Unique NameFC877855
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length902
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC877855 vs. ExPASy Swiss-Prot
Match: IAA13_ORYSJ (Auxin-responsive protein IAA13 OS=Oryza sativa subsp. japonica GN=IAA13 PE=2 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 8.499e-39
Identity = 107/222 (48.20%), Postives = 122/222 (54.95%), Query Frame = 2
Query:  176 TELRLGLPXXXXXXXXXXXXXXXXXXXXXXXXXXMKRGFADTVVDLKLNLSTK-----ESGGIDVIQKTKGKSASATGATDLSKPPA-KAQVVGWPPVRSFRKNIMAVQ----KDNEEGDNK-----AXXXXXXNVAFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIGNCGSQGMKDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWE 796
            TELRLGLP                           KRGF +T+ DLKL L T       +G  +     K K  +   A D  KPPA KAQ VGWPPVRSFR+NIM VQ    K  EE D +     A      + AFVKVSMDGAPYLRKVDLK+Y SY++LS AL KMF +FT          + MNE      +NGSD V TYEDKDGDWMLVGDVPW+
Sbjct:   10 TELRLGLPGGGGGAAEAAAKAA-------------KRGFEETI-DLKLKLPTAGMEEAAAGKAEAPAAEKAKRPAEAAAADAEKPPAPKAQAVGWPPVRSFRRNIMTVQSVKSKKEEEADKQQQQPAANASGSNSSAFVKVSMDGAPYLRKVDLKMYNSYKDLSLALQKMFGTFT-------ATGNNMNE------VNGSDAVTTYEDKDGDWMLVGDVPWQ 204          
BLAST of FC877855 vs. ExPASy Swiss-Prot
Match: IAA13_ORYSI (Auxin-responsive protein IAA13 OS=Oryza sativa subsp. indica GN=IAA13 PE=2 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 8.499e-39
Identity = 107/222 (48.20%), Postives = 122/222 (54.95%), Query Frame = 2
Query:  176 TELRLGLPXXXXXXXXXXXXXXXXXXXXXXXXXXMKRGFADTVVDLKLNLSTK-----ESGGIDVIQKTKGKSASATGATDLSKPPA-KAQVVGWPPVRSFRKNIMAVQ----KDNEEGDNK-----AXXXXXXNVAFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIGNCGSQGMKDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWE 796
            TELRLGLP                           KRGF +T+ DLKL L T       +G  +     K K  +   A D  KPPA KAQ VGWPPVRSFR+NIM VQ    K  EE D +     A      + AFVKVSMDGAPYLRKVDLK+Y SY++LS AL KMF +FT          + MNE      +NGSD V TYEDKDGDWMLVGDVPW+
Sbjct:   10 TELRLGLPGGGGGAAEAAAKAA-------------KRGFEETI-DLKLKLPTAGMEEAAAGKAEAPAAEKAKRPAEAAAADAEKPPAPKAQAVGWPPVRSFRRNIMTVQSVKSKKEEEADKQQQQPAANASGSNSSAFVKVSMDGAPYLRKVDLKMYNSYKDLSLALQKMFGTFT-------ATGNNMNE------VNGSDAVTTYEDKDGDWMLVGDVPWQ 204          
BLAST of FC877855 vs. ExPASy Swiss-Prot
Match: IAA11_ORYSJ (Auxin-responsive protein IAA11 OS=Oryza sativa subsp. japonica GN=IAA11 PE=2 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 6.091e-37
Identity = 101/236 (42.80%), Postives = 122/236 (51.69%), Query Frame = 2
Query:  161 INFEATELRLGLPXXXXXXXXXXXXXXXXXXXXXXXXXXMKRGFADTVVDLKLNLSTKESGGID-----------------------VIQKTKGKSASATGATDLSKPPA-KAQVVGWPPVRSFRKNIMAVQKDNEEGDNKAXXXXXXNVAFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIGNCGSQGMKDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWE 796
            + F+ TELRLGLP                           KRGFA+T+ DLKL L       +                         ++++  +S+  T   D  KP A KAQVVGWPPVRSFRKN++A +                  A VKVSMDGAPYLRK+D+ +YKSY ELS A   MF+SFTIG CGS   +     +KL D L   +YVPTYEDKDGDWMLVGDVPWE
Sbjct:    4 LGFDETELRLGLPGAGELAARSSG----------------KRGFAETI-DLKLKLQPAAPAAVSGEEGAQEDKEDADAAAAAADEKMSMKRSASQSSVVTAEPDPDKPRAPKAQVVGWPPVRSFRKNVLAEK--------------CKAAALVKVSMDGAPYLRKIDVAMYKSYPELSMAFQNMFTSFTIGKCGSH--QQLKESNKLRDDL---EYVPTYEDKDGDWMLVGDVPWE 203          
BLAST of FC877855 vs. ExPASy Swiss-Prot
Match: IAA17_ORYSJ (Auxin-responsive protein IAA17 OS=Oryza sativa subsp. japonica GN=IAA17 PE=2 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 4.085e-33
Identity = 93/223 (41.70%), Postives = 116/223 (52.02%), Query Frame = 2
Query:  164 NFEATELRLGLPXXXXXXXXXXXXXXXXXXXXXXXXXXMKRGFADTVVDLKLNLSTKESGGIDVIQKTKGKSASATGATDLSK------------PPAKAQVVGWPPVRSFRKNIMAVQKDNEEGDNKAXXXXXXNVAFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIGNCGSQGMKDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWE 796
            + + TELRLGLP                           KRGF+D    L  + +   + G       KGK A+A    + ++            P AKAQVVGWPP+RS+RKN MA  +     ++ A         +VKVSMDGAPYLRKVDLK YK+Y++LS AL KMF  FT G       KD ++ES+        +YV TYEDKDGDWMLVGDVPWE
Sbjct:   27 DLKGTELRLGLPGSHSPDRSPPAATLDLLPAAKGA----KRGFSDEARPLPASAAAAAAAG-------KGKKAAAGEEDEDAEEEDKKVAAAPQAPAAKAQVVGWPPIRSYRKNTMATNQLKSSKED-AEAKQGQGFLYVKVSMDGAPYLRKVDLKTYKNYKDLSTALEKMFIGFTTG-------KDGLSESR-----KDGEYVLTYEDKDGDWMLVGDVPWE 225          
BLAST of FC877855 vs. ExPASy Swiss-Prot
Match: IAA5_ORYSJ (Auxin-responsive protein IAA5 OS=Oryza sativa subsp. japonica GN=IAA5 PE=2 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 9.101e-33
Identity = 75/155 (48.39%), Postives = 94/155 (60.65%), Query Frame = 2
Query:  338 SGGIDVIQKTKGKSASATGATDLSKPPAKAQVVGWPPVRSFRKNIMAVQKDNEEGDNKAXXXXXXNVAFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIGNCG--SQGMKDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWE 796
            SG +      + K+A A      + P AKAQVVGWPPVR++RKN +A      +G++K          +VKVSMDGAPYLRKVDLK+Y SY++LS AL KMFS F  G  G      +D +      D L   +YV TYEDKD DWMLVGD+PW+
Sbjct:   92 SGSVAAAAACQDKAAPAA-----APPAAKAQVVGWPPVRNYRKNTLAASASKGKGEDKGTAEGGP--LYVKVSMDGAPYLRKVDLKMYSSYEDLSMALEKMFSCFITGQSGLRKSSNRDRLTNGSKADALQDQEYVLTYEDKDADWMLVGDLPWD 239          
BLAST of FC877855 vs. ExPASy Swiss-Prot
Match: IAA4_ARATH (Auxin-responsive protein IAA4 OS=Arabidopsis thaliana GN=IAA4 PE=2 SV=2)

HSP 1 Score: 140.969 bits (354), Expect = 9.101e-33
Identity = 90/220 (40.91%), Postives = 113/220 (51.36%), Query Frame = 2
Query:  137 KFESFIKMINFEATELRLGLPXXXXXXXXXXXXXXXXXXXXXXXXXXMKRGFADTVVDLKLNLSTKESGGIDVIQKTKGKSASATGATDLSKPPAKAQVVGWPPVRSFRKNIMAVQKDNEEGDNKAXXXXXXNVAFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIGNCGSQGMKDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWE 796
            K + + +++N +ATELRLGLP                             G  +TV   K N          V+ +   K   +TG T+ + PP KAQ+VGWPPVRS+RKN +  +K   EG             +VKVSMDGAPYLRK+DL +YK Y EL  +L  MF  F++G         F  E        GSD+VPTYEDKDGDWMLVGDVPWE
Sbjct:    3 KVDVYDELVNLKATELRLGLP-----------------------------GTEETVSCGKSNKR--------VLPEATEKEIESTGKTETASPP-KAQIVGWPPVRSYRKNNVQTKKSESEGQGN----------YVKVSMDGAPYLRKIDLTMYKQYPELMKSLENMFK-FSVGEY-------FEREG-----YKGSDFVPTYEDKDGDWMLVGDVPWE 161          
BLAST of FC877855 vs. ExPASy Swiss-Prot
Match: IAA19_ORYSJ (Auxin-responsive protein IAA19 OS=Oryza sativa subsp. japonica GN=IAA19 PE=2 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 1.189e-32
Identity = 81/179 (45.25%), Postives = 103/179 (57.54%), Query Frame = 2
Query:  281 KRGFADTVVDLK-----LNLSTKESGGIDVIQKTKGKSASATGATDLSKPPAKAQVVGWPPVRSFRKNIMAVQKDNEEGDNKAXXXXXXNVAFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIGNCGSQ--GMKDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWE 796
            KRGF D++   +           E G  +  ++ KG   +A GA       AKAQVVGWPPVRS+RKN +A      +G+++          +VKVSMDGAPYLRKVDLK Y SY++LS AL KMFS F  G   S     +D + +    D L   +YV TYEDKD DWMLVGD+PW+
Sbjct:   77 KRGFVDSLDRSEGRRAAATAGDDERGVREEEEEEKGLGEAAAGAPRA----AKAQVVGWPPVRSYRKNTLAASATKTKGEDQGKSEV--GCCYVKVSMDGAPYLRKVDLKTYSSYEDLSLALEKMFSCFITGRSSSHKTSKRDRLTDGSRADALKDQEYVLTYEDKDADWMLVGDLPWD 249          
BLAST of FC877855 vs. ExPASy Swiss-Prot
Match: IAA5_ORYSI (Auxin-responsive protein IAA5 OS=Oryza sativa subsp. indica GN=IAA5 PE=2 SV=2)

HSP 1 Score: 139.428 bits (350), Expect = 2.648e-32
Identity = 70/130 (53.85%), Postives = 85/130 (65.38%), Query Frame = 2
Query:  413 PPAKAQVVGWPPVRSFRKNIMAVQKDNEEGDNKAXXXXXXNVAFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIGNCG--SQGMKDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWE 796
            P AKAQVVGWPPVR++RKN +A      +G++K          +VKVSMDGAPYLRKVDLK+Y SY++LS AL KMFS F  G  G      +D +      D L   +YV TYEDKD DWMLVGD+PW+
Sbjct:  113 PAAKAQVVGWPPVRNYRKNTLAASASKGKGEDKGTAEGGP--LYVKVSMDGAPYLRKVDLKMYSSYEDLSMALEKMFSCFITGQSGLRKSSNRDRLTNGSKADALQDQEYVLTYEDKDADWMLVGDLPWD 240          
BLAST of FC877855 vs. ExPASy Swiss-Prot
Match: IAA15_ORYSJ (Auxin-responsive protein IAA15 OS=Oryza sativa subsp. japonica GN=IAA15 PE=2 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 1.006e-31
Identity = 84/185 (45.41%), Postives = 106/185 (57.30%), Query Frame = 2
Query:  290 FADTVVDLKLNLSTKESGGIDVIQKTKG------KSASAT--------GATDLSKPPA-KAQVVGWPPVRSFRKNIMAVQKDNEEGDNKAXXXXXXNVAFVKVSMDGAPYLRKVDLKLYKSYQELSDAL-GKMFSSFTIGNCGSQGMKDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWE 796
            F DT + L+L  S+  S        +        K ASAT        G+T    PP+ KA+VVGWPPVR+FRKN +A          K          FVKV++DGAPYLRKVDL+ Y+ Y +L  AL  K FS FTI   G++       E KL+D ++G++YVPTYEDKDGDWMLVGDVPW+
Sbjct:   20 FEDTALTLRLPGSSSSSSSSSSSSSSSSPSEPDRKRASATDDDPDNRLGSTATESPPSPKARVVGWPPVRAFRKNALAALAAASSSKAK----------FVKVAVDGAPYLRKVDLEAYRGYDQLLAALQDKFFSHFTIRKLGNE-------EMKLVDAVSGNEYVPTYEDKDGDWMLVGDVPWK 187          
BLAST of FC877855 vs. ExPASy Swiss-Prot
Match: IAA3_ARATH (Auxin-responsive protein IAA3 OS=Arabidopsis thaliana GN=IAA3 PE=1 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 2.928e-31
Identity = 82/214 (38.32%), Postives = 106/214 (49.53%), Query Frame = 2
Query:  155 KMINFEATELRLGLPXXXXXXXXXXXXXXXXXXXXXXXXXXMKRGFADTVVDLKLNLSTKESGGIDVIQKTKGKSASATGATDLSKPPAKAQVVGWPPVRSFRKNIMAVQKDNEEGDNKAXXXXXXNVAFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIGNCGSQGMKDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWE 796
            + +N + TELRLGLP                                D V + K  +S   +    V+     K   ++     + PP KAQ+VGWPPVRS+RKN +  +K+  E + +          +VKVSMDGAPYLRK+DL  YK Y EL  AL  MF  F++G    +            D   GSD+VPTYEDKDGDWML+GDVPWE
Sbjct:    3 EFVNLKETELRLGLPG------------------------------TDNVCEAKERVSCCNNNNKRVLSTDTEKEIESSSRKTETSPPRKAQIVGWPPVRSYRKNNIQSKKNESEHEGQGI--------YVKVSMDGAPYLRKIDLSCYKGYSELLKALEVMFK-FSVGEYFER------------DGYKGSDFVPTYEDKDGDWMLIGDVPWE 165          
The following BLAST results are available for this feature:
BLAST of FC877855 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
IAA13_ORYSJ8.499e-3948.20Auxin-responsive protein IAA13 OS=Oryza sativa sub... [more]
IAA13_ORYSI8.499e-3948.20Auxin-responsive protein IAA13 OS=Oryza sativa sub... [more]
IAA11_ORYSJ6.091e-3742.80Auxin-responsive protein IAA11 OS=Oryza sativa sub... [more]
IAA17_ORYSJ4.085e-3341.70Auxin-responsive protein IAA17 OS=Oryza sativa sub... [more]
IAA5_ORYSJ9.101e-3348.39Auxin-responsive protein IAA5 OS=Oryza sativa subs... [more]
IAA4_ARATH9.101e-3340.91Auxin-responsive protein IAA4 OS=Arabidopsis thali... [more]
IAA19_ORYSJ1.189e-3245.25Auxin-responsive protein IAA19 OS=Oryza sativa sub... [more]
IAA5_ORYSI2.648e-3253.85Auxin-responsive protein IAA5 OS=Oryza sativa subs... [more]
IAA15_ORYSJ1.006e-3145.41Auxin-responsive protein IAA15 OS=Oryza sativa sub... [more]
IAA3_ARATH2.928e-3138.32Auxin-responsive protein IAA3 OS=Arabidopsis thali... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA27DH04RM1 IVIA1 Citrus clementina cDNA clone IC0AAA27DH04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877855 ID=FC877855; Name=FC877855; organism=Citrus clementina; type=EST; length=902bp
CAAAAAAGAAAAAAAAAAACCAAAAGTACTACTCTCGATGCCCTCTCAAA
ACACAAACAAACCAACCAAAAAAAAAAAAAACAAGAGAGTGATAATTAAT
TAATTAAGAGAGGAGTTTAAGGAGTGTTTAGTGTGTAAATTTGAAAGTTT
CATTAAGATGATTAACTTCGAAGCGACGGAGCTTCGGCTAGGGTTACCGG
GCGGTAACGGCGGAAGCAGTGAAGGTGGTGGTGGTGGCGGCGGCGGTGAG
AAAGCCAAGAACAATAACATTAATGGCATGAAGAGAGGATTTGCAGACAC
CGTTGTTGATTTGAAGCTAAATCTTTCAACAAAAGAGTCAGGTGGGATTG
ATGTAATTCAGAAGACGAAGGGCAAAAGTGCTTCTGCTACTGGGGCTACA
GACCTTTCAAAGCCTCCGGCCAAGGCACAAGTTGTGGGTTGGCCACCCGT
TAGATCATTCAGAAAGAACATCATGGCCGTCCAAAAGGACAATGAAGAAG
GTGATAATAAGGCTAGCAGCAGCAGCAGCAGCAATGTAGCTTTTGTTAAA
GTGAGCATGGATGGTGCCCCATACTTGCGCAAGGTTGATTTGAAGCTATA
CAAAAGCTACCAAGAACTCTCTGATGCCCTTGGCAAAATGTTCAGCTCTT
TCACCATTGGTAACTGTGGGTCACAAGGGATGAAGGATTTTATGAATGAG
AGCAAACTGATTGATCTTTTGAATGGCTCAGATTATGTACCTACTTATGA
AGACAAAGATGGAGATTGGATGCTTGTTGGTGATGTACCATGGGAGTAAG
TTCATTCATTTCTATTGTGTTACATTAGAGTCAGTACAACCAATCTATAG
AATCATGACATGTATATAAAAACAGTCACGATGTCATGTGTTGATTGGTT
GC
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