FC877874

Overview
NameFC877874
Unique NameFC877874
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length879
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC877874_ssr8 microsatellite FC877874_ssr8:8..17. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig11531 contig Ccv1_Contig11531:69..947. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC877874 vs. ExPASy Swiss-Prot
Match: OSBL2_MOUSE (Oxysterol-binding protein-related protein 2 OS=Mus musculus GN=Osbpl2 PE=2 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 5.643e-32
Identity = 75/199 (37.69%), Postives = 118/199 (59.30%), Query Frame = 2
Query:  293 WKMMQKYIGADVQSLVTLPVFISEPNSVLQRMAELMEYSHLLDLADECEDPYMRLVYASSWALS-IYFAYRRAWKPFNPVLGETFEMVNHG-GVTFIAEQVSHHPPMSAGHAE--NEHFIYDVTSKLRTKFLGNSIDVYPVGRTRVTLKRDGVVLDLVPPPTKVHNLIFGRTWIDSPGDMVMTNLTTGDKVVLYFXPCG 877
            W +++K IG ++ S +T+P+  +EP S LQR+ E ME+ +L+  A     P  R+   +++A+S +   + R  KPFNP+LGET+E++    G  FI+EQVSHHPP+SA ++E  N+ F +  +   + KF G S++  P G   + L +         P   VHN+I G+ WI+  G + + N  TGDK +L+F PCG
Sbjct:   77 WSILKKCIGLEL-SKITMPIAFNEPLSFLQRITEYMEHVYLIHKASSQSQPLERMQSVAAFAVSAVASQWERTGKPFNPLLGETYELIREDLGFRFISEQVSHHPPISAFYSEGLNQDFRFHGSIYPKLKFWGKSVEAEPRGTITLELLKHNEAYTWTNPTCCVHNVILGQLWIEQYGIVEIVNHRTGDKCILHFKPCG 274          
BLAST of FC877874 vs. ExPASy Swiss-Prot
Match: OSBL2_HUMAN (Oxysterol-binding protein-related protein 2 OS=Homo sapiens GN=OSBPL2 PE=1 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 9.625e-32
Identity = 75/199 (37.69%), Postives = 117/199 (58.79%), Query Frame = 2
Query:  293 WKMMQKYIGADVQSLVTLPVFISEPNSVLQRMAELMEYSHLLDLADECEDPYMRLVYASSWALS-IYFAYRRAWKPFNPVLGETFEMVNHG-GVTFIAEQVSHHPPMSAGHAE--NEHFIYDVTSKLRTKFLGNSIDVYPVGRTRVTLKRDGVVLDLVPPPTKVHNLIFGRTWIDSPGDMVMTNLTTGDKVVLYFXPCG 877
            W +++K +G ++ S +T+P+  +EP S LQR+ E ME+ +L+  A     P  R+   +++A+S +   + R  KPFNP+LGET+E++    G  FI+EQVSHHPP+SA H+E  N  F++  +   + KF G S++  P G   + L +         P   VHN+I G+ WI+  G + + N  TG K VL+F PCG
Sbjct:   77 WTILKKCVGLEL-SKITMPIAFNEPLSFLQRITEYMEHVYLIHRASCQPQPLERMQSVAAFAVSAVASQWERTGKPFNPLLGETYELIREDLGFRFISEQVSHHPPISAFHSEGLNHDFLFHGSIYPKLKFWGKSVEAEPRGTITLELLKHNEAYTWTNPTCCVHNVIIGKLWIEQYGTVEILNHRTGHKCVLHFKPCG 274          
BLAST of FC877874 vs. ExPASy Swiss-Prot
Match: YB35_SCHPO (Oxysterol-binding protein homolog C2F12.05c OS=Schizosaccharomyces pombe GN=SPBC2F12.05c PE=1 SV=2)

HSP 1 Score: 136.732 bits (343), Expect = 1.642e-31
Identity = 79/200 (39.50%), Postives = 120/200 (60.00%), Query Frame = 2
Query:  293 WKMMQKYIGADVQSLVTLPVFISEPNSVLQRMAELMEYSHLLDLADECEDPYMRLVYASSWALSIYFA-YRRAWKPFNPVLGETFEMVN-HGGVTFIAEQVSHHPPMSAGHAENEHFIYDVTSKLRTKFLGNSIDVYPVGRTRVTLKRDGVVLDLV---PPPTKVHNLIFGRTWIDSPGDMVMTNLTTGDKVVLYFXPCG 877
            W +++  IG D+  + TLPV  +EP S+LQR+AE MEY+ LLD A   +DPY R++Y +++A S Y +   R  KPFNP+LGET+E  +   G  FI EQVSHHPP+ A ++E+ ++ Y   S +++KF G S D+ P+G   + L+     ++L       + V  +I G   +D+ G M + N ++G   VL F P G
Sbjct:  939 WGILKGMIGKDMTKM-TLPVSFNEPTSLLQRVAEDMEYTELLDQASHNKDPYQRILYVAAFAASEYASTLNRVAKPFNPLLGETYEFCHPQRGFRFIVEQVSHHPPVGAAYSESANWKYYGESSVKSKFYGKSFDISPLGTWFLELRHPSGEVELYTWKKVTSSVVGIILGSPSVDNYGQMHIVNHSSGINCVLDFKPRG 1137          
BLAST of FC877874 vs. ExPASy Swiss-Prot
Match: OSBP1_MOUSE (Oxysterol-binding protein 1 OS=Mus musculus GN=Osbp PE=1 SV=2)

HSP 1 Score: 136.346 bits (342), Expect = 2.144e-31
Identity = 81/217 (37.33%), Postives = 120/217 (55.30%), Query Frame = 2
Query:  233 EDAEDEARRGRWKQEERDNYWKMMQKYIGADVQSLVTLPVFISEPNSVLQRMAELMEYSHLLDLADECEDPYMRLVYASSWALSIY-FAYRRAWKPFNPVLGETFEM--VNHGGVTFIAEQVSHHPPMSAGHAENEH-FIYDVTSKLRTKFLGNSIDVYPVGRTRVTLKRDGVVLDLVPPPTKVHNLIFGRTWIDSPGDMVMTNLTTGDKVVLYFXP 871
            E  +++  R  +K     N W +M+  IG ++ S + +PV  +EP S+LQR+ E +EY  LLD A +CE+   +L Y +++ +S Y     R  KPFNP+LGETFE+  +   G   I EQVSHHPP +A HAE+++ +      K+ +KF G  + + P+G         G         T VHN+I G+ WID  G++ + N  TGDK  L F P
Sbjct:  344 ETKKEKRTRIPYKPNYSLNLWSIMKNCIGKEL-SKIPMPVNFNEPLSMLQRLTEDLEYHELLDRAAKCENSLEQLCYVAAFTVSSYSTTVFRTSKPFNPLLGETFELDRLEENGYRSICEQVSHHPPAAAHHAESKNGWTLRQEIKITSKFRGKYLSIMPLGTIHCIFHSTGHHYTWKKVTTTVHNIIVGKLWIDQSGEIDIVNHKTGDKCNLKFVP 559          
BLAST of FC877874 vs. ExPASy Swiss-Prot
Match: OSBP1_RABIT (Oxysterol-binding protein 1 OS=Oryctolagus cuniculus GN=OSBP PE=1 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 3.658e-31
Identity = 80/217 (36.87%), Postives = 120/217 (55.30%), Query Frame = 2
Query:  233 EDAEDEARRGRWKQEERDNYWKMMQKYIGADVQSLVTLPVFISEPNSVLQRMAELMEYSHLLDLADECEDPYMRLVYASSWALSIY-FAYRRAWKPFNPVLGETFEM--VNHGGVTFIAEQVSHHPPMSAGHAENEH-FIYDVTSKLRTKFLGNSIDVYPVGRTRVTLKRDGVVLDLVPPPTKVHNLIFGRTWIDSPGDMVMTNLTTGDKVVLYFXP 871
            E  +++  R  +K     N W +M+  IG ++ S + +PV  +EP S+LQR+ E +EY  LLD A +CE+   +L Y +++ +S Y     R  KPFNP+LGETFE+  +   G   + EQVSHHPP +A HAE+++ +      K+ +KF G  + + P+G         G         T VHN+I G+ WID  G++ + N  TGDK  L F P
Sbjct:  402 ETKKEKRTRIPYKPNYSLNLWSIMKNCIGKEL-SKIPMPVNFNEPLSMLQRLTEDLEYHELLDRAAKCENSLEQLCYVAAFTVSSYSTTVFRTSKPFNPLLGETFELDRLEENGYRSLCEQVSHHPPAAAHHAESKNGWTLRQEIKITSKFRGKYLSIMPLGTIHCIFHATGHHYTWKKVTTTVHNIIVGKLWIDQSGEIDIVNHKTGDKCNLKFVP 617          
BLAST of FC877874 vs. ExPASy Swiss-Prot
Match: OSBP1_HUMAN (Oxysterol-binding protein 1 OS=Homo sapiens GN=OSBP PE=1 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 3.658e-31
Identity = 80/217 (36.87%), Postives = 120/217 (55.30%), Query Frame = 2
Query:  233 EDAEDEARRGRWKQEERDNYWKMMQKYIGADVQSLVTLPVFISEPNSVLQRMAELMEYSHLLDLADECEDPYMRLVYASSWALSIY-FAYRRAWKPFNPVLGETFEM--VNHGGVTFIAEQVSHHPPMSAGHAENEH-FIYDVTSKLRTKFLGNSIDVYPVGRTRVTLKRDGVVLDLVPPPTKVHNLIFGRTWIDSPGDMVMTNLTTGDKVVLYFXP 871
            E  +++  R  +K     N W +M+  IG ++ S + +PV  +EP S+LQR+ E +EY  LLD A +CE+   +L Y +++ +S Y     R  KPFNP+LGETFE+  +   G   + EQVSHHPP +A HAE+++ +      K+ +KF G  + + P+G         G         T VHN+I G+ WID  G++ + N  TGDK  L F P
Sbjct:  400 ETKKEKRTRIPYKPNYSLNLWSIMKNCIGKEL-SKIPMPVNFNEPLSMLQRLTEDLEYHELLDRAAKCENSLEQLCYVAAFTVSSYSTTVFRTSKPFNPLLGETFELDRLEENGYRSLCEQVSHHPPAAAHHAESKNGWTLRQEIKITSKFRGKYLSIMPLGTIHCIFHATGHHYTWKKVTTTVHNIIVGKLWIDQSGEIDIVNHKTGDKCNLKFVP 615          
BLAST of FC877874 vs. ExPASy Swiss-Prot
Match: OSH1_YEAST (Oxysterol-binding protein homolog 1 OS=Saccharomyces cerevisiae GN=OSH1 PE=1 SV=4)

HSP 1 Score: 127.102 bits (318), Expect = 1.301e-28
Identity = 80/230 (34.78%), Postives = 124/230 (53.91%), Query Frame = 2
Query:  221 EGSTEDAEDEARRGRWKQEE---RDNYWKMMQKYIGADVQSLVTLPVFISEPNSVLQRMAELMEYSHLLDLADECEDPYMRLVYASSWALSIYFA-YRRAWKPFNPVLGETFEMV-NHGGVTFIAEQVSHHPPMSAGHAENEHFIYDVTSKLRTKFLGNSIDVYPVGRTRVTLKRDGVV------LDLVPPPTKVHNLIFGRTWIDSPGDMVMTNLTTGDKVVLYFXPCG 877
            EGS    ED  R      E+   +   W +++  +G D+  L TLPV  +EP S+LQR++E +EYSH+LD A   ED  +R++Y +++  S+Y +   R  KPFNP+LGETFE     G   F  EQVSHHPP+SA   E+  + +     + + F G +  V  +G   +T++ D  +           P   V  ++ G+  +D+ GD+ +TN TTGD  +L++   G
Sbjct:  774 EGSFVGYEDPVRTKLALDEDNRPKIGLWSVLKSMVGQDLTKL-TLPVSFNEPTSLLQRVSEDIEYSHILDQAATFEDSSLRMLYVAAFTASMYASTTNRVSKPFNPLLGETFEYARTDGQYRFFTEQVSHHPPISATWTESPKWDFYGECNVDSSFNGRTFAVQHLGLWYITIRPDHNISVPEETYSWKKPNNTVIGILMGKPQVDNSGDVKVTNHTTGDYCMLHYKAHG 1002          
BLAST of FC877874 vs. ExPASy Swiss-Prot
Match: OSBP2_MOUSE (Oxysterol-binding protein 2 OS=Mus musculus GN=Osbp2 PE=2 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 6.456e-28
Identity = 73/201 (36.32%), Postives = 112/201 (55.72%), Query Frame = 2
Query:  287 NYWKMMQKYIGADVQSLVTLPVFISEPNSVLQRMAELMEYSHLLDLADECEDPYMRLVYASSWALSIY-FAYRRAWKPFNPVLGETFEM--VNHGGVTFIAEQVSHHPPMSAGHAENEH---FIYDVTSKLRTKFLGNSIDVYPVGRTRVTLKRDGVVLDLVPPPTKVHNLIFGRTWIDSPGDMVMTNLTTGDKVVLYFXP 871
            N W +M+  IG ++ S + +PV  +EP S+LQR+ E +EY HLLD A  C     ++   +++++S Y     R  KPFNP+LGETFE+  +   G+  + EQVSHHPP +A H  ++H      ++T  + +KF G  I + P+G   +  +  G         + VHN+I G+ WID  GD+ + N  T D+  L F P
Sbjct:  519 NLWSIMKNCIGREL-SRIPMPVNFNEPLSMLQRLTEDLEYHHLLDKAVNCTSSVEQMCLVAAFSVSSYSTTVHRIAKPFNPMLGETFELDRMEDMGLRSLCEQVSHHPPSAAHHVFSKHGWSLWQEIT--IASKFRGKYISIMPLGAIHLEFQASGNHYVWRKSTSTVHNIIVGKLWIDQSGDIEIVNHKTKDRCQLKFVP 716          
BLAST of FC877874 vs. ExPASy Swiss-Prot
Match: OSBP2_HUMAN (Oxysterol-binding protein 2 OS=Homo sapiens GN=OSBP2 PE=1 SV=2)

HSP 1 Score: 124.405 bits (311), Expect = 8.432e-28
Identity = 86/269 (31.97%), Postives = 140/269 (52.04%), Query Frame = 2
Query:   89 ASDGSKQGGGFFASIAAGWSTIGSAMSKSVNGLLGYEGLEVVNPEGSTEDAEDEARRGRW--KQEERDNYWKMMQKYIGADVQSLVTLPVFISEPNSVLQRMAELMEYSHLLDLADECEDPYMRLVYASSWALSIY-FAYRRAWKPFNPVLGETFEM--VNHGGVTFIAEQVSHHPPMSAGHAENEH---FIYDVTSKLRTKFLGNSIDVYPVGRTRVTLKRDGVVLDLVPPPTKVHNLIFGRTWIDSPGDMVMTNLTTGDKVVLYFXP 871
            A + S++  G   + +  WS+  + +          +G  +V P+GS++      RR R   K     N W +M+  IG ++ S + +PV  +EP S+LQR+ E +EY HLLD A  C     ++   +++++S Y     R  KPFNP+LGETFE+  ++  G+  + EQVSHHPP +A +  ++H      ++T  + +KF G  I + P+G   +  +  G         + VHN+I G+ WID  GD+ + N  T D+  L F P
Sbjct:  469 AKEDSRKAEGSTGTSSVDWSSADNVL----------DGASLV-PKGSSK----VKRRVRIPNKPNYSLNLWSIMKNCIGREL-SRIPMPVNFNEPLSMLQRLTEDLEYHHLLDKAVHCTSSVEQMCLVAAFSVSSYSTTVHRIAKPFNPMLGETFELDRLDDMGLRSLCEQVSHHPPSAAHYVFSKHGWSLWQEIT--ISSKFRGKYISIMPLGAIHLEFQASGNHYVWRKSTSTVHNIIVGKLWIDQSGDIEIVNHKTNDRCQLKFLP 719          
BLAST of FC877874 vs. ExPASy Swiss-Prot
Match: OSH2_YEAST (Oxysterol-binding protein homolog 2 OS=Saccharomyces cerevisiae GN=OSH2 PE=1 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 4.185e-27
Identity = 86/234 (36.75%), Postives = 126/234 (53.85%), Query Frame = 2
Query:  206 EVVNPEGSTEDAEDEARRGRWKQEERD----NYWKMMQKYIGADVQSLVTLPVFISEPNSVLQRMAELMEYSHLLDLADECEDPYMRLVYASSWALSIYFA-YRRAWKPFNPVLGETFEMVN-HGGVTFIAEQVSHHPPMSAGHAENEHFIYDVTSKLRTKFLGNSIDVYPVGRTRVTLK-RDGVVLDLV---PPPTKVHNLIFGRTWIDSPGDMVMTNLTTGDKVVLYFXPCG 877
            E +  EGS    ED  R+ R   ++ D    + W +++  +G D+  + TLPV  +EP S+LQR+AE +EYS LLD A   ED  +R +Y +++  S Y +  +R  KPFNP+LGETFE         F  EQVSHHPP+SA   E+  + +   S + TKF G S +V  +G   + L+  D    +L     P   V  ++ G   +D+ G++ + N TTGD   LYF   G
Sbjct:  867 EYLLKEGSYLGYEDGIRK-RLSMDKDDRPKISLWAVLKSMVGKDMTRM-TLPVTFNEPTSLLQRVAEDLEYSELLDQAATFEDSTLRTLYVAAFTASSYASTTKRVAKPFNPLLGETFEYSRPDKQYRFFTEQVSHHPPISATWTESPRWDFWGESFVDTKFNGRSFNVKHLGLWHIKLRPNDNEKEELYTWKKPNNTVIGILIGNPQVDNHGEVNVVNHTTGDHCKLYFKARG 1098          
The following BLAST results are available for this feature:
BLAST of FC877874 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35
Match NameE-valueIdentityDescription
OSBL2_MOUSE5.643e-3237.69Oxysterol-binding protein-related protein 2 OS=Mus... [more]
OSBL2_HUMAN9.625e-3237.69Oxysterol-binding protein-related protein 2 OS=Hom... [more]
YB35_SCHPO1.642e-3139.50Oxysterol-binding protein homolog C2F12.05c OS=Sch... [more]
OSBP1_MOUSE2.144e-3137.33Oxysterol-binding protein 1 OS=Mus musculus GN=Osb... [more]
OSBP1_RABIT3.658e-3136.87Oxysterol-binding protein 1 OS=Oryctolagus cunicul... [more]
OSBP1_HUMAN3.658e-3136.87Oxysterol-binding protein 1 OS=Homo sapiens GN=OSB... [more]
OSH1_YEAST1.301e-2834.78Oxysterol-binding protein homolog 1 OS=Saccharomyc... [more]
OSBP2_MOUSE6.456e-2836.32Oxysterol-binding protein 2 OS=Mus musculus GN=Osb... [more]
OSBP2_HUMAN8.432e-2831.97Oxysterol-binding protein 2 OS=Homo sapiens GN=OSB... [more]
OSH2_YEAST4.185e-2736.75Oxysterol-binding protein homolog 2 OS=Saccharomyc... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA60DA05RM1 IVIA1 Citrus clementina cDNA clone IC0AAA60DA05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877874 ID=FC877874; Name=FC877874; organism=Citrus clementina; type=EST; length=879bp
TAAAACGTCTCTCTCTCTATTCTCTCTAAGCTACGTATTCATTCGATAGC
TGCGAGTATTTTCTCCTGAGATTGTTAATTGAGACATGGCTTCCGATGGA
TCTAAGCAAGGCGGCGGTTTCTTCGCCTCCATCGCCGCCGGTTGGTCGAC
TATCGGCTCCGCCATGAGTAAATCGGTCAACGGTTTATTGGGCTATGAAG
GGCTGGAAGTTGTTAATCCTGAAGGGAGCACGGAAGATGCTGAAGATGAA
GCAAGAAGAGGAAGATGGAAACAGGAGGAAAGGGACAATTACTGGAAGAT
GATGCAAAAGTATATAGGTGCTGATGTTCAATCGTTGGTGACTCTTCCTG
TATTTATTTCAGAGCCAAATTCAGTGCTGCAGAGAATGGCAGAGTTGATG
GAGTACTCCCACCTTCTGGATCTGGCAGATGAATGCGAGGATCCATACAT
GAGATTGGTATATGCTTCATCATGGGCTTTATCAATCTACTTTGCCTATC
GACGGGCCTGGAAGCCATTTAATCCAGTTCTTGGTGAAACTTTTGAAATG
GTTAATCATGGTGGTGTTACATTTATAGCTGAACAAGTTAGTCATCACCC
CCCAATGAGTGCTGGTCATGCCGAAAATGAGCACTTCATTTATGATGTGA
CTTCAAAGTTGAGAACAAAATTTTTAGGAAACTCGATTGATGTTTATCCA
GTTGGAAGGACACGTGTGACACTTAAAAGAGATGGGGTGGTTCTCGATTT
GGTGCCCCCTCCCACAAAGGTTCACAATTTAATTTTTGGACGAACTTGGA
TTGATTCACCGGGGGATATGGTCATGACTAACTTGACCACGGGCGACAAA
GTTGTGTTATATTTTNCACCATGTGGATG
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