FC877874

Overview
NameFC877874
Unique NameFC877874
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length879
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC877874_ssr8 microsatellite FC877874_ssr8:8..17. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig11531 contig Ccv1_Contig11531:69..947. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC877874 vs. ExPASy Swiss-Prot
Match: YEH1_SCHPO (Oxysterol-binding protein homolog C23H4.01c OS=Schizosaccharomyces pombe GN=SPAC23H4.01c PE=1 SV=2)

HSP 1 Score: 109.768 bits (273), Expect = 2.149e-23
Identity = 68/198 (34.34%), Postives = 115/198 (58.08%), Query Frame = 2
Query:  299 MMQKYIGADVQSLVTLPVFISEPNSVLQRMAELMEYSHLLDLADECEDPYMRLVYASSWALSIY----FAYRRAWKPFNPVLGETFEMVNHG-GVTFIAEQVSHHPPMSAGHAENEHFIYDVTSKLRTKFLGNSIDVYPVGRTRVTLKRDGVVLDLVPPPTKVHNLIFGRTWIDSPGDMVMTNLTTGDKVVLYFXPCG 877
            +++K IG D+ S +  PV  +EP ++LQR AE +EYS++LD A+EC+D  +++ Y +++A+S +       R   K F+P+LGETFE+V       F+AE+V H P + A HAE+ ++I++ + K   KF G S+++  +G   + L   G     + P   + N+  G  +++    M + + TTGDK V+ F   G
Sbjct:  576 ILRKNIGKDISS-IPAPVVSNEPCNLLQRCAEDLEYSNMLDKANECDDD-IKIFYVAAFAVSNFSNMRHKERSVRKVFSPLLGETFELVREDRNYRFLAEKVCHRPLIIACHAESRNWIWNHSPKPIQKFWGKSVELNTLGPVTIKL-ACGTEFSFMKPACFLKNVAIGEKYVEPYDHMEIVDETTGDKAVIRFKSGG 770          
BLAST of FC877874 vs. ExPASy Swiss-Prot
Match: OSH3_YEAST (Oxysterol-binding protein homolog 3 OS=Saccharomyces cerevisiae GN=OSH3 PE=1 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 3.794e-20
Identity = 67/197 (34.01%), Postives = 105/197 (53.30%), Query Frame = 2
Query:  302 MQKYIGADVQSLVTLPVFISEPNSVLQRMAELMEYSHLLDLADECEDPYMRLVYASSWALSIYFAYRRAW----KPFNPVLGETFEMVNHG-GVTFIAEQVSHHPPMSAGHAENEHFIYDVTSKLRTKFLGNSIDVYPVGRTRVTLKRDGVVLDLVPPPTKVHNLIFGRTWIDSPGDMVMTNLTTGDKVVLYFXPCG 877
            ++K +G D+ S + +PV  +EP S+LQ ++E  EY+ LL  A +  DP   + + S++A+S    YR       KPFNP+L ETFE++    G   I+E+VSH PP+ A  AE+  +    T     KF G SI++   G  R+  K  G + +   P T + NLI G  +++ P +    + + GDK  + F   G
Sbjct:  647 LRKNVGKDLSS-IAMPVTSNEPISILQLISETFEYAPLLTKATQRPDP---ITFVSAFAISFLSIYRDKTRTLRKPFNPLLAETFELIREDMGFRLISEKVSHRPPVFAFFAEHLDWECSYTVTPSQKFWGKSIELNNEGILRLKFKTTGELFEWTQPTTILKNLIAGERYME-PVNEFEVHSSKGDKSHILFDKAG 838          
BLAST of FC877874 vs. ExPASy Swiss-Prot
Match: OSBL8_HUMAN (Oxysterol-binding protein-related protein 8 OS=Homo sapiens GN=OSBPL8 PE=1 SV=3)

HSP 1 Score: 96.6709 bits (239), Expect = 1.883e-19
Identity = 62/206 (30.10%), Postives = 100/206 (48.54%), Query Frame = 2
Query:  272 QEERDNYWKMMQKYIGADVQSLVTLPVFISEPNSVLQRMAELMEYSHLLDLADECEDPYMRLVYASSWALSIYFAYRRAW-KPFNPVLGETFEMV-----NHGGVTFIAEQVSHHPPMSAGHAEN--EHFIYDVTSKLRTKFLGNSIDVYPVGRTRVTLKRDGVVLDLVPPPTKVHNLIFGRTWIDSPGDMVMTNLTTGDKVVLYF 865
            +E +   W ++++       S V LP FI EP S L ++++   ++  L  A   E+PY RL     W LS ++   +   KP+NP+LGETF  +      +    +IAEQVSHHPP+SA +  N  + F    +   ++KF GNS+     G  R+T    G    +  P      +++G   ++  G + +T   TG   +L F
Sbjct:  401 EENKSLIWTLLKQVRPGMDLSKVVLPTFILEPRSFLDKLSDYYYHADFLSEAALEENPYFRLKKVVKWYLSGFYKKPKGLKKPYNPILGETFRCLWIHPRTNSKTFYIAEQVSHHPPISAFYVSNRKDGFCLSGSILAKSKFYGNSLSAILEGEARLTFLNRGEDYVMTMPYAHCKGILYGTMTLELGGTVNITCQKTGYSAILEF 606          
BLAST of FC877874 vs. ExPASy Swiss-Prot
Match: OSBL9_PONAB (Oxysterol-binding protein-related protein 9 OS=Pongo abelii GN=OSBPL9 PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 2.082e-18
Identity = 74/240 (30.83%), Postives = 116/240 (48.33%), Query Frame = 2
Query:  227 STEDAEDEARRGRWKQEERDNYWKMMQKYIGADVQSLVTLPVFISEPNSVLQRMAELMEYSHLLDLADECEDPYMRLVYASSWALSIYFAYRR---AWKPFNPVLGETF--------------EMVNHG--------GVTFIAEQVSHHPPMSAGHAE--NEHFIYDVTSKLRTKFLGNSIDVYPVGRTRVTLKRDGVVLDLVPPPTKVHNLIFGRTWIDSPGDMVMTNLTTGDKVVLYF 865
            S +D +D+A  G  ++ +      + Q  +G D+  +V LP FI E  S+L+  A+   +  L     + +DP  R+V    W LS + A R+   A KP+NP+LGE F              E+V+ G         VTF+AEQVSHHPP+SA +AE  N+   ++     ++KFLG SI V+ +G+  V+   D     ++  P      IF   W++  G+  +    TG    + F
Sbjct:  355 SHDDRDDDAEAGSVEEHKSVIMHLLSQVRLGMDLTKVV-LPTFILERRSLLEMYADFFAHPDLFVSISDQKDPKDRMVQVVKWYLSAFHAGRKGSVAKKPYNPILGEIFQCYWTLPNDTEENTELVSEGPVPWVSKNSVTFVAEQVSHHPPISAFYAECFNKKIQFNAHIWTKSKFLGMSIGVHNIGQGCVSC-LDYDEHYILTFPNGYGRSIFTVPWVELGGECNINCSKTGYSANIIF 592          
BLAST of FC877874 vs. ExPASy Swiss-Prot
Match: OSBL9_HUMAN (Oxysterol-binding protein-related protein 9 OS=Homo sapiens GN=OSBPL9 PE=1 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 3.551e-18
Identity = 64/188 (34.04%), Postives = 98/188 (52.13%), Query Frame = 2
Query:  227 STEDAEDEARRGRWKQEERDNYWKMMQKYIGADVQSLVTLPVFISEPNSVLQRMAELMEYSHLLDLADECEDPYMRLVYASSWALSIYFAYRR---AWKPFNPVLGETF--------------EMVNHG--------GVTFIAEQVSHHPPMSAGHAE--NEHFIYDVTSKLRTKFLGNSIDVYPVGR 709
            S +D +D+A  G  ++ +      + Q  +G D+  +V LP FI E  S+L+  A+   +  L     + +DP  R+V    W LS + A R+   A KP+NP+LGE F              E+V+ G         VTF+AEQVSHHPP+SA +AE  N+   ++     ++KFLG SI V+ +G+
Sbjct:  355 SHDDRDDDAEAGSVEEHKSVIMHLLSQVRLGMDLTKVV-LPTFILERRSLLEMYADFFAHPDLFVSISDQKDPKDRMVQVVKWYLSAFHAGRKGSVAKKPYNPILGEIFQCHWTLPNDTEENTELVSEGPVPWVSKNSVTFVAEQVSHHPPISAFYAECFNKKIQFNAHIWTKSKFLGMSIGVHNIGQ 541          
BLAST of FC877874 vs. ExPASy Swiss-Prot
Match: OSBL9_MOUSE (Oxysterol-binding protein-related protein 9 OS=Mus musculus GN=Osbpl9 PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 4.638e-18
Identity = 64/188 (34.04%), Postives = 97/188 (51.60%), Query Frame = 2
Query:  227 STEDAEDEARRGRWKQEERDNYWKMMQKYIGADVQSLVTLPVFISEPNSVLQRMAELMEYSHLLDLADECEDPYMRLVYASSWALSIYFAYRR---AWKPFNPVLGETF--------------EMVNHG--------GVTFIAEQVSHHPPMSAGHAE--NEHFIYDVTSKLRTKFLGNSIDVYPVGR 709
            S +D +D+   G  ++ +      + Q  +G D+  +V LP FI E  S+L+  A+   +  L     + +DP  R+V    W LS + A RR   A KP+NP+LGE F              E+V+ G         VTF+AEQVSHHPP+SA +AE  N+   ++     ++KFLG SI V+ +G+
Sbjct:  355 SHDDRDDDGEAGSVEEHKSVIMHLLSQVRLGMDLTKVV-LPTFILERRSLLEMYADFFAHPDLFVSISDQKDPRDRMVQVVKWYLSAFHAGRRGSVAKKPYNPILGEIFQCHWTLPNDTEENAELVSEGPVPWVSKNSVTFVAEQVSHHPPISAFYAECFNKKIQFNAHIWTKSKFLGMSIGVHNIGQ 541          
BLAST of FC877874 vs. ExPASy Swiss-Prot
Match: OSB4_DICDI (Oxysterol-binding protein 4 OS=Dictyostelium discoideum GN=osbD PE=3 SV=2)

HSP 1 Score: 88.5817 bits (218), Expect = 5.127e-17
Identity = 64/193 (33.16%), Postives = 95/193 (49.22%), Query Frame = 2
Query:  314 IGADVQSLVTLPVFISEPNSVLQRMAELMEYSHLLDLADECEDPYMRLVYASSWALSIYFAYRR--AWKPFNPVLGETFE-----MVNHGGVTFIAEQVSHHPPMSAGHAENEHFIYDVTSKL--RTKFLGNSIDVYPVGRTRVTLKRDGVVLDLVPPPTKVHNLIFGRTWIDSPGDMVMTNLTTGDKVVLYF 865
            IG D+ S V LP FI EP S+L++  + M +  +L    + E P  R+   + W LS  F YR+    KP+NP+LGE F         +     +AEQ+SHHPP+S  +  N    Y +T  +  R+KFLGNS+ V   G + +TL        +  P      +IFG    +  G+  ++   T  KV + F
Sbjct:   87 IGVDL-SRVPLPTFILEPRSLLEKFTDNMIHGEILCNLSKLESPMDRMHLITKWYLSA-FHYRKKGLQKPYNPILGEIFRTRWEFKETNSNCIMVAEQISHHPPVSCIYLSNRKDGYTMTGTINPRSKFLGNSMAVIVDGSSTLTLLGLQEEYVITFPTAVARGIIFGTLLTEIVGNSTISCKQTNIKVEMDF 277          
BLAST of FC877874 vs. ExPASy Swiss-Prot
Match: OSBL9_XENTR (Oxysterol-binding protein-related protein 9 OS=Xenopus tropicalis GN=osbpl9 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 6.697e-17
Identity = 73/241 (30.29%), Postives = 111/241 (46.06%), Query Frame = 2
Query:  230 TEDAEDEARRGRWKQEERDNYWKMM-QKYIGADVQSLVTLPVFISEPNSVLQRMAELMEYSHLLDLADECEDPYMRLVYASSWALSIYFAYRR---AWKPFNPVLGETF---------------EMVNHG--------GVTFIAEQVSHHPPMSAGHAE--NEHFIYDVTSKLRTKFLGNSIDVYPVGRTRVTLKRDGVVLDLVPPPTKVHNLIFGRTWIDSPGDMVMTNLTTGDKVVLYF 865
            T D  D+   G   +E +     ++ Q  +G D+  +V LP FI E  S+L+  A+   +  L     E +DP  R+     W LS + A R+   A KP+NP+LGE F               E V+ G         VTF+AEQVSHHPP+SA +AE  N+   ++     ++KFLG SI V+ +G+  V+   D     ++  P      I    W++  G+  +    TG    + F
Sbjct:  357 THDDRDDDGEGESVEEHKSVIMHLLSQVRLGMDLTKVV-LPTFILERRSLLEMYADFFAHPDLFVSIGEHKDPKDRMAQVVKWYLSAFHAGRKGSVAKKPYNPILGEVFQCHWALPGLENDENPEAVSEGPIPWASKNNVTFVAEQVSHHPPISAFYAECYNKRIQFNAHIWTKSKFLGMSIGVHNIGQGCVSC-LDYDEHYILTFPNGYGRSILTVPWVELGGECTINCSKTGYNATITF 595          
BLAST of FC877874 vs. ExPASy Swiss-Prot
Match: OSBL5_MOUSE (Oxysterol-binding protein-related protein 5 OS=Mus musculus GN=Osbpl5 PE=2 SV=3)

HSP 1 Score: 87.8113 bits (216), Expect = 8.746e-17
Identity = 56/189 (29.63%), Postives = 90/189 (47.62%), Query Frame = 2
Query:  272 QEERDNYWKMMQKYIGADVQSLVTLPVFISEPNSVLQRMAELMEYSHLLDLADECEDPYMRLVYASSWALS-IYFAYRRAWKPFNPVLGETFEM-----VNHGGVTFIAEQVSHHPPMSAGHAEN--EHFIYDVTSKLRTKFLGNSIDVYPVGRTRVTLKRDGVVLDLVPPPTKVHNLIFGRTWIDSPG 814
            +E +   W ++++       S V LP F+ EP S L ++++   +  LL  A   +DPY R+     W LS  Y   +   KP+NP+LGETF         +    +IAEQVSHHPP+SA +  N  + F    +   ++KF GNS+     G+ ++T         L  P      +++G   ++  G
Sbjct:  364 EENKSLMWVLLRQLRPGMDLSRVVLPTFVLEPRSFLGKLSDYYYHGDLLSRAAAEDDPYCRMKLVLRWYLSGFYKKPKGIKKPYNPILGETFRCRWLHPQTNSHTFYIAEQVSHHPPVSAFYVSNRKDGFCMSGSITAKSKFYGNSLSALLDGKAKLTFLNRKEEYTLTMPYAHCRGILYGTMTMELGG 552          
BLAST of FC877874 vs. ExPASy Swiss-Prot
Match: OSBL5_HUMAN (Oxysterol-binding protein-related protein 5 OS=Homo sapiens GN=OSBPL5 PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.142e-16
Identity = 56/193 (29.02%), Postives = 90/193 (46.63%), Query Frame = 2
Query:  272 QEERDNYWKMMQKYIGADVQSLVTLPVFISEPNSVLQRMAELMEYSHLLDLADECEDPYMRLVYASSWALS-IYFAYRRAWKPFNPVLGETFEMV-----NHGGVTFIAEQVSHHPPMSAGHAEN--EHFIYDVTSKLRTKFLGNSIDVYPVGRTRVTLKRDGVVLDLVPPPTKVHNLIFGRTWIDSPGDMVM 826
            +E +   W ++++       S V LP F+ EP S L ++++   ++ LL  A   ED Y R+     W LS  Y   +   KP+NP+LGETF              +IAEQVSHHPP+SA H  N  + F    +   +++F GNS+     G+  +T         L  P      +++G   ++  G + +
Sbjct:  365 EENKSLMWTLLKQLRPGMDLSRVVLPTFVLEPRSFLNKLSDYYYHADLLSRAAVEEDAYSRMKLVLRWYLSGFYKKPKGIKKPYNPILGETFRCCWFHPQTDSRTFYIAEQVSHHPPVSAFHVSNRKDGFCISGSITAKSRFYGNSLSALLDGKATLTFLNRAEDYTLTMPYAHCKGILYGTMTLELGGKVTI 557          
The following BLAST results are available for this feature:
BLAST of FC877874 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35
Match NameE-valueIdentityDescription
YEH1_SCHPO2.149e-2334.34Oxysterol-binding protein homolog C23H4.01c OS=Sch... [more]
OSH3_YEAST3.794e-2034.01Oxysterol-binding protein homolog 3 OS=Saccharomyc... [more]
OSBL8_HUMAN1.883e-1930.10Oxysterol-binding protein-related protein 8 OS=Hom... [more]
OSBL9_PONAB2.082e-1830.83Oxysterol-binding protein-related protein 9 OS=Pon... [more]
OSBL9_HUMAN3.551e-1834.04Oxysterol-binding protein-related protein 9 OS=Hom... [more]
OSBL9_MOUSE4.638e-1834.04Oxysterol-binding protein-related protein 9 OS=Mus... [more]
OSB4_DICDI5.127e-1733.16Oxysterol-binding protein 4 OS=Dictyostelium disco... [more]
OSBL9_XENTR6.697e-1730.29Oxysterol-binding protein-related protein 9 OS=Xen... [more]
OSBL5_MOUSE8.746e-1729.63Oxysterol-binding protein-related protein 5 OS=Mus... [more]
OSBL5_HUMAN1.142e-1629.02Oxysterol-binding protein-related protein 5 OS=Hom... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA60DA05RM1 IVIA1 Citrus clementina cDNA clone IC0AAA60DA05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877874 ID=FC877874; Name=FC877874; organism=Citrus clementina; type=EST; length=879bp
TAAAACGTCTCTCTCTCTATTCTCTCTAAGCTACGTATTCATTCGATAGC
TGCGAGTATTTTCTCCTGAGATTGTTAATTGAGACATGGCTTCCGATGGA
TCTAAGCAAGGCGGCGGTTTCTTCGCCTCCATCGCCGCCGGTTGGTCGAC
TATCGGCTCCGCCATGAGTAAATCGGTCAACGGTTTATTGGGCTATGAAG
GGCTGGAAGTTGTTAATCCTGAAGGGAGCACGGAAGATGCTGAAGATGAA
GCAAGAAGAGGAAGATGGAAACAGGAGGAAAGGGACAATTACTGGAAGAT
GATGCAAAAGTATATAGGTGCTGATGTTCAATCGTTGGTGACTCTTCCTG
TATTTATTTCAGAGCCAAATTCAGTGCTGCAGAGAATGGCAGAGTTGATG
GAGTACTCCCACCTTCTGGATCTGGCAGATGAATGCGAGGATCCATACAT
GAGATTGGTATATGCTTCATCATGGGCTTTATCAATCTACTTTGCCTATC
GACGGGCCTGGAAGCCATTTAATCCAGTTCTTGGTGAAACTTTTGAAATG
GTTAATCATGGTGGTGTTACATTTATAGCTGAACAAGTTAGTCATCACCC
CCCAATGAGTGCTGGTCATGCCGAAAATGAGCACTTCATTTATGATGTGA
CTTCAAAGTTGAGAACAAAATTTTTAGGAAACTCGATTGATGTTTATCCA
GTTGGAAGGACACGTGTGACACTTAAAAGAGATGGGGTGGTTCTCGATTT
GGTGCCCCCTCCCACAAAGGTTCACAATTTAATTTTTGGACGAACTTGGA
TTGATTCACCGGGGGATATGGTCATGACTAACTTGACCACGGGCGACAAA
GTTGTGTTATATTTTNCACCATGTGGATG
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