FC877875

Overview
NameFC877875
Unique NameFC877875
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length922
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC877875 vs. ExPASy Swiss-Prot
Match: MPA12_AMBAR (Pollen allergen Amb a 1.2 OS=Ambrosia artemisiifolia PE=1 SV=1)

HSP 1 Score: 270.011 bits (689), Expect = 1.336e-71
Identity = 144/275 (52.36%), Postives = 174/275 (63.27%), Query Frame = 1
Query:  103 PVQDPELVVEEVHKSINASRRNLGFLSCGTGNPIDDCWRCDPKWEENRQQLADCAIGFGKQAIGGKDGKIYVVTDSGDDDPVNPKPGTLRYAVIQDEPLWIIFARDMVITLKEELIMNSFKTIDGRGASVHIAGGPCITIQYVTNIIIHGINIHDCK--RGGNANVRDSPSHYGWRTISDGDGVSIFGGSHVWVDHCSLSNCNDGLIDAIHGSTAITISNNYMTHHNKVMLLGHSDTFTQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNND 921
            PV+  E  VEE   S N +RR+L   +C   N ID CWRC   W  NRQ LADCA GF K   GGK G +Y VT   DDD  NPK GTLR+A  Q+ PLWIIF R+MVI L +EL++NS KTIDGRG  V+I     +T+  V NIIIH INIHD K   GG     D P     R  SDGD +++ G S +W+DHCSLS  +DGL+D   GS+ +T+SN   T H  V+LLG  DT  QDK M  T+AFN F + + QRMPRCR G+F VVNN+
Sbjct:   22 PVRSAE-DVEEFLPSANETRRSLK--ACEAHNIIDKCWRCKADWANNRQALADCAQGFAKGTYGGKHGDVYTVTSDKDDDVANPKEGTLRFAAAQNRPLWIIFKRNMVIHLNQELVVNSDKTIDGRGVKVNIVNAG-LTLMNVKNIIIHNINIHDIKVCPGGMIKSNDGPPIL--RQQSDGDAINVAGSSQIWIDHCSLSKASDGLLDITLGSSHVTVSNCKFTQHQFVLLLGADDTHYQDKGMLATVAFNMFTDHVDQRMPRCRFGFFQVVNNN 290          
BLAST of FC877875 vs. ExPASy Swiss-Prot
Match: SBP_CRYJA (Sugi basic protein OS=Cryptomeria japonica PE=1 SV=2)

HSP 1 Score: 269.24 bits (687), Expect = 2.278e-71
Identity = 128/250 (51.20%), Postives = 172/250 (68.80%), Query Frame = 1
Query:  181 SCGTGNPIDDCWRCDPKWEENRQQLADCAIGFGKQAIGGKDGKIYVVTDSGDDDPVNPKPGTLRYAVIQDEPLWIIFARDMVITLKEELIMNSFKTIDGRGASVHIA-GGPCITIQYVTNIIIHGINIHDCKRGGNANVRDSPSHYGWRTI--SDGDGVSIFGGSHVWVDHCSLSNCNDGLIDAIHGSTAITISNNYMTHHNKVMLLGHSDTFTQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNND 921
            SC + NPID CWR D  W +NR +LADCA+GFG   +GGK G +Y VT+S DDDPVNP PGTLRY   +D PLWIIF+ +M I LK  + +  +KT DGRGA V+I  GGPC+ I+ V+N+IIHG++++ C      NV  + S +G   +   DGD +++   +++W+DH S SN +DGL+D    ST +TISNN   +H+KVMLLGH D ++ DK+M+VT+AFN FG    QRMPR R+G  HV NN+
Sbjct:   18 SCFSDNPIDSCWRGDSNWAQNRMKLADCAVGFGSSTMGGKGGDLYTVTNS-DDDPVNPAPGTLRYGATRDRPLWIIFSGNMNIKLKMPMYIAGYKTFDGRGAQVYIGNGGPCVFIKRVSNVIIHGLHLYGCSTSVLGNVLINES-FGVEPVHPQDGDALTLRTATNIWIDHNSFSNSSDGLVDVTLSSTGVTISNNLFFNHHKVMLLGHDDAYSDDKSMKVTVAFNQFGPNCGQRMPRARYGLVHVANNN 265          
BLAST of FC877875 vs. ExPASy Swiss-Prot
Match: MPAJ1_JUNAS (Major pollen allergen Jun a 1 OS=Juniperus ashei PE=1 SV=1)

HSP 1 Score: 268.47 bits (685), Expect = 3.886e-71
Identity = 131/255 (51.37%), Postives = 175/255 (68.63%), Query Frame = 1
Query:  178 LSCGTGNPIDDCWRCDPKWEENRQQLADCAIGFGKQAIGGKDGKIYVVTDSGDDDPVNPKPGTLRYAVIQDEPLWIIFARDMVITLKEELIMNSFKTIDGRGASVHIA-GGPCITIQYVTNIIIHGINIHDCKRG--GNANVRDS----PSHYGWRTISDGDGVSIFGGSHVWVDHCSLSNCNDGLIDAIHGSTAITISNNYMTHHNKVMLLGHSDTFTQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNND 921
            +SC + NPID CWR D  W++NR +LADCA+GFG   +GGK G  Y VT S DD+PVNP PGTLRY   +++ LWIIF+++M I LK  L +   KTIDGRGA VH+  GGPC+ ++ V+++I+H ++IH C     G+  V +S    P H       DGD +++   ++ W+DH SLS+C+DGLID   GST ITISNN+  +H+KVMLLGH DT+  DK+M+VT+AFN FG    QRMPR R+G  HV NN+
Sbjct:   17 VSCYSDNPIDSCWRGDSNWDQNRMKLADCAVGFGSSTMGGKGGDFYTVT-STDDNPVNPTPGTLRYGATREKALWIIFSQNMNIKLKMPLYVAGHKTIDGRGADVHLGNGGPCLFMRKVSHVILHSLHIHGCNTSVLGDVLVSESIGVEPVH-----AQDGDAITMRNVTNAWIDHNSLSDCSDGLIDVTLGSTGITISNNHFFNHHKVMLLGHDDTYDDDKSMKVTVAFNQFGPNAGQRMPRARYGLVHVANNN 265          
BLAST of FC877875 vs. ExPASy Swiss-Prot
Match: MPAA2_AMBAR (Pollen allergen Amb a 2 OS=Ambrosia artemisiifolia PE=1 SV=1)

HSP 1 Score: 265.388 bits (677), Expect = 3.290e-70
Identity = 134/262 (51.15%), Postives = 169/262 (64.50%), Query Frame = 1
Query:  133 EVHKSINASRRNLGFLSCGTGNPIDDCWRCDPKWEENRQQLADCAIGFGKQAIGGKDGKIYVVTDSGDDDPVNPKPGTLRYAVIQDEPLWIIFARDMVITLKEELIMNSFKTIDGRGASVHIAGGPCITIQYVTNIIIHGINIHDCKRGGNANVRDSPSHYGWRTISDGDGVSIFGGSHVWVDHCSLSNCNDGLIDAIHGSTAITISNNYMTHHNKVMLLGHSDTFTQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNN 918
            ++  S N +RR+L    C   N ID CWRC P W ENRQ L +CA GFGK   GGK G IY+VT   DDD VNPK GTLR+   QD PLWIIF RDM+I L++E+++ S KTIDGRGA V +  G  IT+  V N+IIH I+IHD +      ++ +      R  SDGD + + G S +W+DHC+LS   DGL+D   GST +TISN   THH K +LLG SDT  QD  M VT+A+N F   + +RMPRCR G+F +VNN
Sbjct:   30 DILPSPNDTRRSLQ--GCEAHNIIDKCWRCKPDWAENRQALGNCAQGFGKATHGGKWGDIYMVTSDQDDDVVNPKEGTLRFGATQDRPLWIIFQRDMIIYLQQEMVVTSDKTIDGRGAKVELVYGG-ITLMNVKNVIIHNIDIHDVRVLPGGRIKSNGGPAIPRHQSDGDAIHVTGSSDIWIDHCTLSKSFDGLVDVNWGSTGVTISNCKFTHHEKAVLLGASDTHFQDLKMHVTLAYNIFTNTVHERMPRCRFGFFQIVNN 288          
BLAST of FC877875 vs. ExPASy Swiss-Prot
Match: MPA13_AMBAR (Pollen allergen Amb a 1.3 OS=Ambrosia artemisiifolia PE=1 SV=1)

HSP 1 Score: 264.618 bits (675), Expect = 5.612e-70
Identity = 143/275 (52.00%), Postives = 171/275 (62.18%), Query Frame = 1
Query:  103 PVQDPELVVEEVHKSINASRRNLGFLSCGTGNPIDDCWRCDPKWEENRQQLADCAIGFGKQAIGGKDGKIYVVTDSGDDDPVNPKPGTLRYAVIQDEPLWIIFARDMVITLKEELIMNSFKTIDGRGASVHIAGGPCITIQYVTNIIIHGINIHDCK--RGGNANVRDSPSHYGWRTISDGDGVSIFGGSHVWVDHCSLSNCNDGLIDAIHGSTAITISNNYMTHHNKVMLLGHSDTFTQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNND 921
            PV+  E  V E+  S+N +R      +C   N ID CWR    WE NRQ LADCA GF K   GGK G +Y VT + DDD  NPK GTLR+A  Q+ PLWIIF  DMVI L +EL++NS KTIDGRG  V I  G  +T+  V NIIIH INIHD K   GG     D P     R  SDGD +++ G S +W+DHCSLS   DGL+D   GST +TISN   T  +K +LLG  DT  QDK M  T+AFN F + + QRMPRCR G+F VVNN+
Sbjct:   22 PVRSAE-GVGEILPSVNETR---SLQACEALNIIDKCWRGKADWENNRQALADCAQGFAKGTYGGKWGDVYTVTSNLDDDVANPKEGTLRFAAAQNRPLWIIFKNDMVINLNQELVVNSDKTIDGRGVKVEIINGG-LTLMNVKNIIIHNINIHDVKVLPGGMIKSNDGPPIL--RQASDGDTINVAGSSQIWIDHCSLSKSFDGLVDVTLGSTHVTISNCKFTQQSKAILLGADDTHVQDKGMLATVAFNMFTDNVDQRMPRCRFGFFQVVNNN 289          
BLAST of FC877875 vs. ExPASy Swiss-Prot
Match: MPAC1_CUPAR (Major pollen allergen Cup a 1 OS=Cupressus arizonica PE=1 SV=1)

HSP 1 Score: 264.233 bits (674), Expect = 7.330e-70
Identity = 127/249 (51.00%), Postives = 173/249 (69.48%), Query Frame = 1
Query:  196 NPIDDCWRCDPKWEENRQQLADCAIGFGKQAIGGKDGKIYVVTDSGDDDPVNPKPGTLRYAVIQDEPLWIIFARDMVITLKEELIMNSFKTIDGRGASVHIA-GGPCITIQYVTNIIIHGINIHDCKRG--GNANVRDS----PSHYGWRTISDGDGVSIFGGSHVWVDHCSLSNCNDGLIDAIHGSTAITISNNYMTHHNKVMLLGHSDTFTQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNND 921
            NPID CWR D  W++NR +LADC +GFG   +GGK G+IY VT S +D+PVNP PGTLRY   +++ LWIIF+++M I L+  L +  +KTIDGRGA VH+  GGPC+ ++  +++I+HG++IH C     G+  V +S    P H       DGD +++   ++ W+DH SLS+C+DGLID   GST ITISNN+  +H+KVMLLGH DT+  DK+M+VT+AFN FG    QRMPR R+G  HV NN+
Sbjct:    2 NPIDSCWRGDSNWDQNRMKLADCVVGFGSSTMGGKGGEIYTVTSS-EDNPVNPTPGTLRYGATREKALWIIFSQNMNIKLQMPLYVAGYKTIDGRGAVVHLGNGGPCLFMRKASHVILHGLHIHGCNTSVLGDVLVSESIGVEPVH-----AQDGDAITMRNVTNAWIDHNSLSDCSDGLIDVTLGSTGITISNNHFFNHHKVMLLGHDDTYDDDKSMKVTVAFNQFGPNAGQRMPRARYGLVHVANNN 244          
BLAST of FC877875 vs. ExPASy Swiss-Prot
Match: MPA11_AMBAR (Pollen allergen Amb a 1.1 OS=Ambrosia artemisiifolia PE=1 SV=1)

HSP 1 Score: 264.233 bits (674), Expect = 7.330e-70
Identity = 132/258 (51.16%), Postives = 165/258 (63.95%), Query Frame = 1
Query:  148 INASRRNLGFLSCGTGNPIDDCWRCDPKWEENRQQLADCAIGFGKQAIGGKDGKIYVVTDSGDDDPVNPKPGTLRYAVIQDEPLWIIFARDMVITLKEELIMNSFKTIDGRGASVHIAGGPCITIQYVTNIIIHGINIHDCKRGGNANVRDSPSHYGWRTISDGDGVSIFGGSHVWVDHCSLSNCNDGLIDAIHGSTAITISNNYMTHHNKVMLLGHSDTFTQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNND 921
            +N +RR     + G  N ID CWR    W ENR+ LADCA GFGK  +GGKDG IY VT   DDD  NPK GTLR+   Q+ PLWIIF RDMVI L +E+++NS KTIDGRGA V I      T+  V N+IIH IN+HD K      ++ +      R  SDGD +SI G S +W+DHCSLS   DGL+DA  G+T +T+SN+  T H  V+L G  D   +D+ M  T+AFN F + + QRMPRCRHG+F VVNN+
Sbjct:   35 VNETRR---LTTSGAYNIIDGCWRGKADWAENRKALADCAQGFGKGTVGGKDGDIYTVTSELDDDVANPKEGTLRFGAAQNRPLWIIFERDMVIRLDKEMVVNSDKTIDGRGAKVEIINAG-FTLNGVKNVIIHNINMHDVKVNPGGLIKSNDGPAAPRAGSDGDAISISGSSQIWIDHCSLSKSVDGLVDAKLGTTRLTVSNSLFTQHQFVLLFGAGDENIEDRGMLATVAFNTFTDNVDQRMPRCRHGFFQVVNNN 288          
BLAST of FC877875 vs. ExPASy Swiss-Prot
Match: MPA14_AMBAR (Pollen allergen Amb a 1.4 OS=Ambrosia artemisiifolia PE=1 SV=1)

HSP 1 Score: 245.743 bits (626), Expect = 2.698e-64
Identity = 134/271 (49.45%), Postives = 160/271 (59.04%), Query Frame = 1
Query:  115 PELVVEEVHKSINASRRNLGFLSCGTGNPIDDCWRCDPKWEENRQQLADCAIGFGKQAIGGKDGKIYVVTDSGDDDPVNPKPGTLRYAVIQDEPLWIIFARDMVITLKEELIMNSFKTIDGRGASVHIAGGPCITIQYVTNIIIHGINIHD--CKRGGNANVRDSPSHYGWRTISDGDGVSIFGGSHVWVDHCSLSNCNDGLIDAIHGSTAITISNNYMTHHNKVMLLGHSDTFTQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNND 921
            P    E++ + + ++       +CGT N ID CWR    W ENR+ LADCA GF K  IGGKDG IY VT   DDD  NPK GTLR+   Q+ PLWIIFARDMVI L  EL +N+ KTIDGRGA V I       I  V NIIIH I +HD     GG     D P     R  SDGD + I GGS +W+DHCSLS   DGLIDA HGST  T+SN   T H  ++L    D    ++ M  T+AFN F + + QRMP  RHG+  VVNN+
Sbjct:   22 PVRSAEDLQQILPSANETRSLTTCGTYNIIDGCWRGKADWAENRKALADCAQGFAKGTIGGKDGDIYTVTSELDDDVANPKEGTLRFGAAQNRPLWIIFARDMVIRLDRELAINNDKTIDGRGAKVEIINAG-FAIYNVKNIIIHNIIMHDIVVNPGGLIKSHDGPPVP--RKGSDGDAIGISGGSQIWIDHCSLSKAVDGLIDAKHGSTHFTVSNCLFTQHQYLLLFWDFD----ERGMLCTVAFNKFTDNVDQRMPNLRHGFVQVVNNN 285          
BLAST of FC877875 vs. ExPASy Swiss-Prot
Match: PELB_COLGL (Pectate lyase B OS=Colletotrichum gloeosporioides GN=PLB PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 7.959e-16
Identity = 74/246 (30.08%), Postives = 104/246 (42.28%), Query Frame = 1
Query:  217 RCDPKWEENRQQLAD-CAIGFGKQAIGGKDGKIYVVTDSGDDDPVNPKPGTLRYAVIQDEPLWIIFARDMVITLKEELIMNSFKTIDGRGASVHIAGGPCITIQYVTNIIIHGINIHDCKRGGNANVRDSPSHYGWRTISD-GDGVSIFGGSHVWVDHCSLSNCN--------DGLIDAIHGSTAITISNNYMTHHNKVMLLGHSDTFTQDK--NMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNN 918
            R DP+    R  + D C +G+G    GG  G    V+           P     A   DE   I+      IT   ++ + S K+I GR  S     G  I  Q   N+I+  + I                    + ++D GD + I   S VWVDHC LS+          DGL+D  H S A+T+SN Y+  H K  L+GHSD+ + +    + VT A NH+   +  R P  R G  H+ NN
Sbjct:   29 RRDPRTVGKRAAITDACDVGYGAGTTGGSGGTTTTVST----------PAQFTAAATSDEKAVIVVKG--AITGATKVKVGSNKSIIGRAGSSLTGVGLYINKQ--ENVIVRNMKIS-------------------KVLADNGDRIGIQASSKVWVDHCDLSSDKKNNGKDYYDGLLDITHASMAVTVSNTYIHDHYKGSLVGHSDSNSAEDTGKLYVTYANNHW-YNVASRNPSVRFGNVHIFNN 240          
BLAST of FC877875 vs. ExPASy Swiss-Prot
Match: PELA_EMENI (Pectate lyase OS=Emericella nidulans GN=pelA PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 4.367e-14
Identity = 72/237 (30.38%), Postives = 100/237 (42.19%), Query Frame = 1
Query:  244 RQQLADCAIGFGKQ---AIGGKDGKIYVVTDSGDDDPVNPKPGTLRYAVIQDEPLWIIFARDMVITLKEELIMNSFKTIDGRGASVHIAGGPCITIQYVTNIIIHGINIHDCKRGGNANVRDSPSHYGWRTISDGDGVSIFGGSHVWVDHCSLS-------NCNDGLIDAIHGSTAITISNNYMTHHNKVMLLGHSDTFTQDK--NMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNN 918
            RQ    C IG+  Q     GG  G    VT+  D          L  A   D PL II +    I+   ++ + S KTI G   S     G    I+ V+N+I+  + I                        +GD + I   S+VWVDHC LS       +  DGL+D  HG+  IT+SN Y   H K  L+GHSD    +   ++ VT A N++   +  R P  R    H++NN
Sbjct:   30 RQASESCPIGYCTQNGGTTGGAAGDTVTVTNLAD----------LTEAAESDGPLTIIVSGS--ISGSAKIRVASDKTIFGESGSSITGIG--FYIRRVSNVIMRNLKISKVDA------------------DNGDAIGIDASSNVWVDHCDLSGDLSGGKDDLDGLVDISHGAEWITVSNTYFHDHWKGSLIGHSDNNEDEDLGHLHVTYA-NNYWYNVYSRTPLIRFATVHIINN 233          
The following BLAST results are available for this feature:
BLAST of FC877875 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 43
Match NameE-valueIdentityDescription
MPA12_AMBAR1.336e-7152.36Pollen allergen Amb a 1.2 OS=Ambrosia artemisiifol... [more]
SBP_CRYJA2.278e-7151.20Sugi basic protein OS=Cryptomeria japonica PE=1 SV... [more]
MPAJ1_JUNAS3.886e-7151.37Major pollen allergen Jun a 1 OS=Juniperus ashei P... [more]
MPAA2_AMBAR3.290e-7051.15Pollen allergen Amb a 2 OS=Ambrosia artemisiifolia... [more]
MPA13_AMBAR5.612e-7052.00Pollen allergen Amb a 1.3 OS=Ambrosia artemisiifol... [more]
MPAC1_CUPAR7.330e-7051.00Major pollen allergen Cup a 1 OS=Cupressus arizoni... [more]
MPA11_AMBAR7.330e-7051.16Pollen allergen Amb a 1.1 OS=Ambrosia artemisiifol... [more]
MPA14_AMBAR2.698e-6449.45Pollen allergen Amb a 1.4 OS=Ambrosia artemisiifol... [more]
PELB_COLGL7.959e-1630.08Pectate lyase B OS=Colletotrichum gloeosporioides ... [more]
PELA_EMENI4.367e-1430.38Pectate lyase OS=Emericella nidulans GN=pelA PE=2 ... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA15CA06RM1 IVIA1 Citrus clementina cDNA clone IC0AAA15CA06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877875 ID=FC877875; Name=FC877875; organism=Citrus clementina; type=EST; length=922bp
TTTCCTAGCAGAGAGAAAGTGAGAGAGATTGAACAAATGGCAATTCCACT
CTTGCTTTGGTTGCTCTTGTGCCTTTTAGCTCCAACCTTCATTTCCTCTT
CACCAGTTCAAGATCCTGAATTAGTAGTGGAAGAAGTACACAAAAGCATC
AATGCGTCTAGGAGGAATTTGGGGTTTCTGTCGTGTGGGACCGGCAATCC
GATCGACGACTGCTGGCGGTGTGACCCGAAGTGGGAAGAGAACCGGCAGC
AGCTAGCGGATTGCGCCATCGGGTTCGGCAAGCAGGCCATTGGTGGGAAA
GATGGTAAGATATATGTTGTTACGGACTCCGGTGACGATGACCCAGTGAA
CCCAAAGCCAGGCACTCTGAGGTATGCTGTGATCCAAGACGAGCCCCTAT
GGATCATTTTCGCACGTGACATGGTGATCACATTGAAAGAGGAGTTGATC
ATGAACTCGTTCAAGACCATCGACGGCCGAGGAGCGAGCGTACACATAGC
CGGTGGTCCATGCATTACTATCCAGTACGTGACCAACATCATTATTCATG
GGATTAATATACATGACTGTAAGAGAGGAGGCAACGCTAACGTGCGGGAC
TCACCAAGTCACTACGGGTGGAGGACTATATCGGACGGCGATGGTGTATC
CATCTTTGGTGGAAGCCACGTGTGGGTTGATCATTGCTCTTTGTCTAATT
GCAACGATGGGTTGATCGATGCCATTCATGGATCCACAGCCATCACAATC
TCAAACAATTACATGACCCACCATAACAAAGTGATGCTTCTGGGCCACAG
TGATACTTTTACTCAGGACAAGAACATGCAAGTCACGATTGCTTTCAATC
ACTTTGGTGAAGGGCTTGTGCAAAGGATGCCTAGATGTAGACATGGGTAT
TTTCATGTAGTGAACAACGACT
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