FC877875

Overview
NameFC877875
Unique NameFC877875
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length922
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC877875 vs. ExPASy Swiss-Prot
Match: PEL_BACSU (Pectate lyase OS=Bacillus subtilis GN=pel PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.660e-13
Identity = 54/170 (31.76%), Postives = 80/170 (47.06%), Query Frame = 1
Query:  466 TIDGRGASVHIAGGPCITIQYVT-NIIIHGINIHDCKRGGNANVRDSPSHYGWRTISDGDGVSIFGGSHVWVDHCSLSNCN-----------------DGLIDAIHGSTAITISNNYMTHHNKVMLLGHSDTFTQDKN-MQVTIAFNHFGEGLVQRMPRCRHGYFHVVNN 918
            TI G G +  + GG     Q  + N+II  I   D             S   W   S  D ++I GG+H+W+DHC+ ++ +                 DG  DA +G+  IT+S NY   H+K  + G SD+ T D   +++T+  N + + +VQR PR R G  HV NN
Sbjct:  151 TIVGSGTNAKVVGG---NFQIKSDNVIIRNIEFQDAYDYFPQWDPTDGSSGNWN--SQYDNITINGGTHIWIDHCTFNDGSRPDSTSPKYYGRKYQHHDGQTDASNGANYITMSYNYYHDHDKSSIFGSSDSKTSDDGKLKITLHHNRY-KNIVQRAPRVRFGQVHVYNN 314          
BLAST of FC877875 vs. ExPASy Swiss-Prot
Match: PELA_DICD3 (Pectate lyase A OS=Dickeya dadantii (strain 3937) GN=pelA PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.405e-12
Identity = 47/130 (36.15%), Postives = 65/130 (50.00%), Query Frame = 1
Query:  598 DSPSHY----GWRTISDGDGVSIFGGSH-VWVDHCSLSNCN-----------------DGLIDAIHGSTAITISNNYMTHHNKVMLLGHSDT-FTQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNN 918
            D   HY    GW   ++ DG++I  G+H VWVDH ++S+ +                 DG +D   GS  +TISN+    H+K ML+GHSDT   QDK       FN+    + +R PR R+G  H  NN
Sbjct:  159 DVEPHYEKGDGWN--AEWDGMNITNGAHHVWVDHVTISDGSFTDDMYTTKDGETYVQHDGALDIKRGSDYVTISNSLFDQHDKTMLIGHSDTNSAQDKGKLHVTLFNNVFNRVTERAPRVRYGSIHSFNN 286          
BLAST of FC877875 vs. ExPASy Swiss-Prot
Match: PELA_ERWCH (Pectate lyase A OS=Erwinia chrysanthemi GN=pelA PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 3.130e-12
Identity = 54/176 (30.68%), Postives = 77/176 (43.75%), Query Frame = 1
Query:  466 TIDGRGASVHIAGGPCIT--IQYVTNIIIHGINIHDCKRGGNANVRDSPSHY----GWRTISDGDGVSIFGGSH-VWVDHCSLSNCN-----------------DGLIDAIHGSTAITISNNYMTHHNKVMLLGHSDT-FTQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNN 918
            T+ G G       G  I        N+II  + I            D   HY    GW   ++ D ++I  G+H VW+DH ++S+ N                 DG +D   GS  +TISN+ +  H+K ML+GH+DT   QDK       FN+    + +R PR R+G  H  NN
Sbjct:  122 TVIGLGTDAKFINGSLIIDGTDGTNNVIIRNVYIQ--------TPIDVEPHYEKGDGWN--AEWDAMNITNGAHHVWIDHVTISDGNFTDDMYTTKDGETYVQHDGALDIKRGSDYVTISNSLIDQHDKTMLIGHNDTNSAQDKGKLHVTLFNNVFNRVTERAPRVRYGSIHSFNN 287          
The following BLAST results are available for this feature:
BLAST of FC877875 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 43
Match NameE-valueIdentityDescription
PEL_BACSU1.660e-1331.76Pectate lyase OS=Bacillus subtilis GN=pel PE=1 SV=... [more]
PELA_DICD31.405e-1236.15Pectate lyase A OS=Dickeya dadantii (strain 3937) ... [more]
PELA_ERWCH3.130e-1230.68Pectate lyase A OS=Erwinia chrysanthemi GN=pelA PE... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA15CA06RM1 IVIA1 Citrus clementina cDNA clone IC0AAA15CA06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877875 ID=FC877875; Name=FC877875; organism=Citrus clementina; type=EST; length=922bp
TTTCCTAGCAGAGAGAAAGTGAGAGAGATTGAACAAATGGCAATTCCACT
CTTGCTTTGGTTGCTCTTGTGCCTTTTAGCTCCAACCTTCATTTCCTCTT
CACCAGTTCAAGATCCTGAATTAGTAGTGGAAGAAGTACACAAAAGCATC
AATGCGTCTAGGAGGAATTTGGGGTTTCTGTCGTGTGGGACCGGCAATCC
GATCGACGACTGCTGGCGGTGTGACCCGAAGTGGGAAGAGAACCGGCAGC
AGCTAGCGGATTGCGCCATCGGGTTCGGCAAGCAGGCCATTGGTGGGAAA
GATGGTAAGATATATGTTGTTACGGACTCCGGTGACGATGACCCAGTGAA
CCCAAAGCCAGGCACTCTGAGGTATGCTGTGATCCAAGACGAGCCCCTAT
GGATCATTTTCGCACGTGACATGGTGATCACATTGAAAGAGGAGTTGATC
ATGAACTCGTTCAAGACCATCGACGGCCGAGGAGCGAGCGTACACATAGC
CGGTGGTCCATGCATTACTATCCAGTACGTGACCAACATCATTATTCATG
GGATTAATATACATGACTGTAAGAGAGGAGGCAACGCTAACGTGCGGGAC
TCACCAAGTCACTACGGGTGGAGGACTATATCGGACGGCGATGGTGTATC
CATCTTTGGTGGAAGCCACGTGTGGGTTGATCATTGCTCTTTGTCTAATT
GCAACGATGGGTTGATCGATGCCATTCATGGATCCACAGCCATCACAATC
TCAAACAATTACATGACCCACCATAACAAAGTGATGCTTCTGGGCCACAG
TGATACTTTTACTCAGGACAAGAACATGCAAGTCACGATTGCTTTCAATC
ACTTTGGTGAAGGGCTTGTGCAAAGGATGCCTAGATGTAGACATGGGTAT
TTTCATGTAGTGAACAACGACT
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