FC877875
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC877875 vs. ExPASy Swiss-Prot
Match: PEL_BACSU (Pectate lyase OS=Bacillus subtilis GN=pel PE=1 SV=1) HSP 1 Score: 77.0258 bits (188), Expect = 1.660e-13 Identity = 54/170 (31.76%), Postives = 80/170 (47.06%), Query Frame = 1 Query: 466 TIDGRGASVHIAGGPCITIQYVT-NIIIHGINIHDCKRGGNANVRDSPSHYGWRTISDGDGVSIFGGSHVWVDHCSLSNCN-----------------DGLIDAIHGSTAITISNNYMTHHNKVMLLGHSDTFTQDKN-MQVTIAFNHFGEGLVQRMPRCRHGYFHVVNN 918 TI G G + + GG Q + N+II I D S W S D ++I GG+H+W+DHC+ ++ + DG DA +G+ IT+S NY H+K + G SD+ T D +++T+ N + + +VQR PR R G HV NN Sbjct: 151 TIVGSGTNAKVVGG---NFQIKSDNVIIRNIEFQDAYDYFPQWDPTDGSSGNWN--SQYDNITINGGTHIWIDHCTFNDGSRPDSTSPKYYGRKYQHHDGQTDASNGANYITMSYNYYHDHDKSSIFGSSDSKTSDDGKLKITLHHNRY-KNIVQRAPRVRFGQVHVYNN 314
BLAST of FC877875 vs. ExPASy Swiss-Prot
Match: PELA_DICD3 (Pectate lyase A OS=Dickeya dadantii (strain 3937) GN=pelA PE=3 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 1.405e-12 Identity = 47/130 (36.15%), Postives = 65/130 (50.00%), Query Frame = 1 Query: 598 DSPSHY----GWRTISDGDGVSIFGGSH-VWVDHCSLSNCN-----------------DGLIDAIHGSTAITISNNYMTHHNKVMLLGHSDT-FTQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNN 918 D HY GW ++ DG++I G+H VWVDH ++S+ + DG +D GS +TISN+ H+K ML+GHSDT QDK FN+ + +R PR R+G H NN Sbjct: 159 DVEPHYEKGDGWN--AEWDGMNITNGAHHVWVDHVTISDGSFTDDMYTTKDGETYVQHDGALDIKRGSDYVTISNSLFDQHDKTMLIGHSDTNSAQDKGKLHVTLFNNVFNRVTERAPRVRYGSIHSFNN 286
BLAST of FC877875 vs. ExPASy Swiss-Prot
Match: PELA_ERWCH (Pectate lyase A OS=Erwinia chrysanthemi GN=pelA PE=1 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 3.130e-12 Identity = 54/176 (30.68%), Postives = 77/176 (43.75%), Query Frame = 1 Query: 466 TIDGRGASVHIAGGPCIT--IQYVTNIIIHGINIHDCKRGGNANVRDSPSHY----GWRTISDGDGVSIFGGSH-VWVDHCSLSNCN-----------------DGLIDAIHGSTAITISNNYMTHHNKVMLLGHSDT-FTQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNN 918 T+ G G G I N+II + I D HY GW ++ D ++I G+H VW+DH ++S+ N DG +D GS +TISN+ + H+K ML+GH+DT QDK FN+ + +R PR R+G H NN Sbjct: 122 TVIGLGTDAKFINGSLIIDGTDGTNNVIIRNVYIQ--------TPIDVEPHYEKGDGWN--AEWDAMNITNGAHHVWIDHVTISDGNFTDDMYTTKDGETYVQHDGALDIKRGSDYVTISNSLIDQHDKTMLIGHNDTNSAQDKGKLHVTLFNNVFNRVTERAPRVRYGSIHSFNN 287 The following BLAST results are available for this feature:
BLAST of FC877875 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 43
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Sequences
The
following sequences are available for this feature:
EST sequence >FC877875 ID=FC877875; Name=FC877875; organism=Citrus clementina; type=EST; length=922bpback to top |