FC877876

Overview
NameFC877876
Unique NameFC877876
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length841
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11861 contig Ccv1_Contig11861:34..875. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC877876 vs. ExPASy Swiss-Prot
Match: PDXS_CHLSY (Pyridoxal biosynthesis lyase pdxS OS=Chloroflexus aurantiacus (strain ATCC 29364 / DSM 637 / Y-400-fl) GN=pdxS PE=3 SV=1)

HSP 1 Score: 223.787 bits (569), Expect = 9.516e-58
Identity = 110/197 (55.84%), Postives = 154/197 (78.17%), Query Frame = 1
Query:  259 KKNPFSIKAGLAQMLRGGAIVEVSSVEQAKIAEAAGACSIMVSEP------SRPGIKRMPDPSLVKSVKRAVSVPVMSRVRVGHFVEAQILESIGLDYIDESEVLGLADEYNFINKHNFRFPFVCGCRNLGEALRRIREGAAMIRIQGDLLNSGNIVETVKNVRSLMGDIRILNNMDEDEVFAFAKKIAAPYDLVAQ 831
            +K+ ++ K GLAQML+GG I++V + EQA+IAE AGA ++M  E       ++ G+ RM DP L+ ++K+AV++PVM++ R+GHFVEAQ+LE+IG+DYIDESEVL  ADE + INKH FR PFVCGCRNLGEALRR+ EGAAM+R +G+   +GN+VE V++ R++  +IR L +M+EDE+F +AK+I APY+LV Q
Sbjct:    2 EKSTWTTKVGLAQMLKGGVIMDVVTPEQARIAEEAGAVAVMALERVPADIRAQGGVARMSDPELILAIKQAVTIPVMAKARIGHFVEAQVLEAIGVDYIDESEVLTPADEEHHINKHKFRVPFVCGCRNLGEALRRVAEGAAMLRTKGE-AGTGNVVEAVRHARAVYSEIRRLQSMNEDELFTYAKQIQAPYELVKQ 197          
BLAST of FC877876 vs. ExPASy Swiss-Prot
Match: PDXS_CHLAA (Pyridoxal biosynthesis lyase pdxS OS=Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl) GN=pdxS PE=3 SV=1)

HSP 1 Score: 223.787 bits (569), Expect = 9.516e-58
Identity = 110/197 (55.84%), Postives = 154/197 (78.17%), Query Frame = 1
Query:  259 KKNPFSIKAGLAQMLRGGAIVEVSSVEQAKIAEAAGACSIMVSEP------SRPGIKRMPDPSLVKSVKRAVSVPVMSRVRVGHFVEAQILESIGLDYIDESEVLGLADEYNFINKHNFRFPFVCGCRNLGEALRRIREGAAMIRIQGDLLNSGNIVETVKNVRSLMGDIRILNNMDEDEVFAFAKKIAAPYDLVAQ 831
            +K+ ++ K GLAQML+GG I++V + EQA+IAE AGA ++M  E       ++ G+ RM DP L+ ++K+AV++PVM++ R+GHFVEAQ+LE+IG+DYIDESEVL  ADE + INKH FR PFVCGCRNLGEALRR+ EGAAM+R +G+   +GN+VE V++ R++  +IR L +M+EDE+F +AK+I APY+LV Q
Sbjct:    2 EKSTWTTKVGLAQMLKGGVIMDVVTPEQARIAEEAGAVAVMALERVPADIRAQGGVARMSDPELILAIKQAVTIPVMAKARIGHFVEAQVLEAIGVDYIDESEVLTPADEEHHINKHKFRVPFVCGCRNLGEALRRVAEGAAMLRTKGE-AGTGNVVEAVRHARAVYSEIRRLQSMNEDELFTYAKQIQAPYELVKQ 197          
BLAST of FC877876 vs. ExPASy Swiss-Prot
Match: PDXS_ROSCS (Pyridoxal biosynthesis lyase pdxS OS=Roseiflexus castenholzii (strain DSM 13941 / HLO8) GN=pdxS PE=3 SV=1)

HSP 1 Score: 223.016 bits (567), Expect = 1.623e-57
Identity = 109/199 (54.77%), Postives = 150/199 (75.38%), Query Frame = 1
Query:  262 KNPFSIKAGLAQMLRGGAIVEVSSVEQAKIAEAAGACSIMVSEP------SRPGIKRMPDPSLVKSVKRAVSVPVMSRVRVGHFVEAQILESIGLDYIDESEVLGLADEYNFINKHNFRFPFVCGCRNLGEALRRIREGAAMIRIQGDLLNSGNIVETVKNVRSLMGDIRILNNMDEDEVFAFAKKIAAPYDLVAQTKQ 840
            K+ ++ K GLAQML+GG I++V + EQA+IAE AGA ++M  E       ++ G+ RM DP L+ ++K AV++PVM++ R+GHFVEAQ+LE++G+DYIDESEVL  ADE + INKH FR PFVCGCRNLGE LRR+ EGAAM+R +G+   +GN+VE V++ R++  +IR L  MDEDE+F +AK I APY+LV Q  +
Sbjct:    3 KSTWTTKVGLAQMLKGGVIMDVVTPEQARIAEEAGAVAVMALERVPADIRAQGGVARMSDPELILAIKEAVTIPVMAKARIGHFVEAQVLEALGIDYIDESEVLTPADEEHHINKHKFRIPFVCGCRNLGEGLRRVAEGAAMLRTKGE-AGTGNVVEAVRHARAVYSEIRRLQTMDEDELFTYAKNIQAPYELVRQVAE 200          
BLAST of FC877876 vs. ExPASy Swiss-Prot
Match: PDX1_SCHPO (Probable pyridoxine biosynthesis PDX1-like protein OS=Schizosaccharomyces pombe GN=snz1 PE=1 SV=1)

HSP 1 Score: 221.861 bits (564), Expect = 3.616e-57
Identity = 112/199 (56.28%), Postives = 150/199 (75.38%), Query Frame = 1
Query:  262 KNPFSIKAGLAQMLRGGAIVEVSSVEQAKIAEAAGACSIMVSEP------SRPGIKRMPDPSLVKSVKRAVSVPVMSRVRVGHFVEAQILESIGLDYIDESEVLGLADEYNFINKHNFRFPFVCGCRNLGEALRRIREGAAMIRIQGDLLNSGNIVETVKNVRSLMGDIRILNNMDEDEVFAFAKKIAAPYDLVAQTKQ 840
            K    +KAGLAQML+GG I++V + EQA+IAEAAGAC++M  E       ++ G+ RM DPS++K ++ AVS+PVM++VR+GHFVEAQILESIG+DYIDESEVL  AD+ N I K  F  PFVCG RNLGEALRRI EGAAMIR +G+   +G++VE V++ R + G++R + +M  DE++ +AK+IAAP DLV +  Q
Sbjct:    6 KGSTQVKAGLAQMLKGGVIMDVVNAEQARIAEAAGACAVMALERVPADIRAQGGVARMSDPSMIKEIQAAVSIPVMAKVRIGHFVEAQILESIGVDYIDESEVLTPADDINHIEKSKFTVPFVCGSRNLGEALRRISEGAAMIRTKGE-AGTGDVVEAVRHTRQMQGELRRVKSMSPDELYTYAKEIAAPIDLVKECAQ 203          
BLAST of FC877876 vs. ExPASy Swiss-Prot
Match: PDXS_DEHSC (Pyridoxal biosynthesis lyase pdxS OS=Dehalococcoides sp. (strain CBDB1) GN=pdxS PE=3 SV=1)

HSP 1 Score: 216.468 bits (550), Expect = 1.519e-55
Identity = 110/193 (56.99%), Postives = 151/193 (78.24%), Query Frame = 1
Query:  271 FSIKAGLAQMLRGGAIVEVSSVEQAKIAEAAGACSIMVSE--PS----RPGIKRMPDPSLVKSVKRAVSVPVMSRVRVGHFVEAQILESIGLDYIDESEVLGLADEYNFINKHNFRFPFVCGCRNLGEALRRIREGAAMIRIQGDLLNSGNIVETVKNVRSLMGDIRILNNMDEDEVFAFAKKIAAPYDLVAQ 831
            F +K+GLAQML+GG I++V++ EQAKIAE AGAC++M  E  PS      G+ RM DP++++ + + VS+PVM++ R+GHFVEAQILES+G+DYIDESEVL  ADE   + KH+F+ PFVCGCR+LGEALRRI EGAAMIR +G+   +GNIVE V+++RS+MG +R + +M  DE+ A+AK+I AP +LV +
Sbjct:    6 FKVKSGLAQMLKGGVIMDVTTPEQAKIAEEAGACAVMALERVPSDIRAAGGVARMADPTIIEQIMKVVSIPVMAKCRIGHFVEAQILESMGVDYIDESEVLTPADENFHVWKHDFKVPFVCGCRDLGEALRRIGEGAAMIRTKGE-AGTGNIVEAVRHMRSVMGSVRRVQSMSPDELSAYAKEINAPLELVLE 197          
BLAST of FC877876 vs. ExPASy Swiss-Prot
Match: PDXS_DEHSB (Pyridoxal biosynthesis lyase pdxS OS=Dehalococcoides sp. (strain BAV1) GN=pdxS PE=3 SV=1)

HSP 1 Score: 216.468 bits (550), Expect = 1.519e-55
Identity = 110/193 (56.99%), Postives = 151/193 (78.24%), Query Frame = 1
Query:  271 FSIKAGLAQMLRGGAIVEVSSVEQAKIAEAAGACSIMVSE--PS----RPGIKRMPDPSLVKSVKRAVSVPVMSRVRVGHFVEAQILESIGLDYIDESEVLGLADEYNFINKHNFRFPFVCGCRNLGEALRRIREGAAMIRIQGDLLNSGNIVETVKNVRSLMGDIRILNNMDEDEVFAFAKKIAAPYDLVAQ 831
            F +K+GLAQML+GG I++V++ EQAKIAE AGAC++M  E  PS      G+ RM DP++++ + + VS+PVM++ R+GHFVEAQILES+G+DYIDESEVL  ADE   + KH+F+ PFVCGCR+LGEALRRI EGAAMIR +G+   +GNIVE V+++RS+MG +R + +M  DE+ A+AK+I AP +LV +
Sbjct:    6 FKVKSGLAQMLKGGVIMDVTTPEQAKIAEEAGACAVMALERVPSDIRAAGGVARMADPTIIEQIMKVVSIPVMAKCRIGHFVEAQILESMGVDYIDESEVLTPADENFHVWKHDFKVPFVCGCRDLGEALRRIGEGAAMIRTKGE-AGTGNIVEAVRHMRSVMGSVRRVQSMSPDELSAYAKEINAPLELVLE 197          
BLAST of FC877876 vs. ExPASy Swiss-Prot
Match: PDXS_DEHE1 (Pyridoxal biosynthesis lyase pdxS OS=Dehalococcoides ethenogenes (strain 195) GN=pdxS PE=3 SV=1)

HSP 1 Score: 216.468 bits (550), Expect = 1.519e-55
Identity = 110/193 (56.99%), Postives = 151/193 (78.24%), Query Frame = 1
Query:  271 FSIKAGLAQMLRGGAIVEVSSVEQAKIAEAAGACSIMVSE--PS----RPGIKRMPDPSLVKSVKRAVSVPVMSRVRVGHFVEAQILESIGLDYIDESEVLGLADEYNFINKHNFRFPFVCGCRNLGEALRRIREGAAMIRIQGDLLNSGNIVETVKNVRSLMGDIRILNNMDEDEVFAFAKKIAAPYDLVAQ 831
            F +K+GLAQML+GG I++V++ EQAKIAE AGAC++M  E  PS      G+ RM DP++++ + + VS+PVM++ R+GHFVEAQILES+G+DYIDESEVL  ADE   + KH+F+ PFVCGCR+LGEALRRI EGAAMIR +G+   +GNIVE V+++RS+MG +R + +M  DE+ A+AK+I AP +LV +
Sbjct:    6 FKVKSGLAQMLKGGVIMDVTTPEQAKIAEEAGACAVMALERVPSDIRAAGGVARMADPTIIEKIMKVVSIPVMAKCRIGHFVEAQILESMGVDYIDESEVLTPADESFHVWKHDFKVPFVCGCRDLGEALRRIGEGAAMIRTKGE-AGTGNIVEAVRHMRSVMGSVRRVQSMSADELSAYAKEINAPLELVLE 197          
BLAST of FC877876 vs. ExPASy Swiss-Prot
Match: PDX1_DICDI (Probable pyridoxine biosynthesis protein pdx1 OS=Dictyostelium discoideum GN=pdx1 PE=1 SV=1)

HSP 1 Score: 214.542 bits (545), Expect = 5.773e-55
Identity = 106/198 (53.54%), Postives = 148/198 (74.75%), Query Frame = 1
Query:  265 NPFSIKAGLAQMLRGGAIVEVSSVEQAKIAEAAGACSIMVSEPSRP------GIKRMPDPSLVKSVKRAVSVPVMSRVRVGHFVEAQILESIGLDYIDESEVLGLADEYNFINKHNFRFPFVCGCRNLGEALRRIREGAAMIRIQGDLLNSGNIVETVKNVRSLMGDIRILNNMDEDEVFAFAKKIAAPYDLVAQTKQ 840
            +PF IK+ LAQML+GG I++V + EQA+IAE AGAC++M  E          G+ RM DP ++K +  AV++PVM++VR+GHFVEAQIL+ IG+DYIDESEVL +AD  N I+K  F+ PFVCGCRNLGEALRRI EGAAMIR +G+   +G++VE V++ R++  +I+ + NMD  E++ +AK+I AP +LV + K+
Sbjct:   14 SPFRIKSSLAQMLKGGVIMDVVTPEQARIAEEAGACAVMALEKIPADIRHFGGVARMSDPGMIKEIMNAVTIPVMAKVRIGHFVEAQILQEIGVDYIDESEVLTIADNENHIDKSEFKVPFVCGCRNLGEALRRISEGAAMIRTKGE-AGTGDVVEAVRHARAVNKEIKKIQNMDPHELYTYAKEIQAPLELVKEVKR 210          
BLAST of FC877876 vs. ExPASy Swiss-Prot
Match: PDXS_HERA2 (Pyridoxal biosynthesis lyase pdxS OS=Herpetosiphon aurantiacus (strain ATCC 23779 / DSM 785) GN=pdxS PE=3 SV=1)

HSP 1 Score: 210.69 bits (535), Expect = 8.336e-54
Identity = 107/193 (55.44%), Postives = 142/193 (73.58%), Query Frame = 1
Query:  271 FSIKAGLAQMLRGGAIVEVSSVEQAKIAEAAGACSIMVSEP------SRPGIKRMPDPSLVKSVKRAVSVPVMSRVRVGHFVEAQILESIGLDYIDESEVLGLADEYNFINKHNFRFPFVCGCRNLGEALRRIREGAAMIRIQGDLLNSGNIVETVKNVRSLMGDIRILNNMDEDEVFAFAKKIAAPYDLVAQ 831
            F+ K GLAQML+GG I++V + +QAKIAE AGA ++M  E          G+ RM DP +++ +  AV++PVM++ R+GHFVEAQILE+IG+DYIDESEVL  ADE +  NKHNF+ PFVCG RNLGEALRRI EGAAMIR +G+   +GN+VE V++ R++  +IR L  +D DE+F  AK + APY+LV Q
Sbjct:    6 FTTKVGLAQMLKGGVIMDVVTPDQAKIAEEAGAVAVMALERVPADIRKDGGVARMSDPEMIQGIIEAVTIPVMAKSRIGHFVEAQILEAIGVDYIDESEVLTPADEEHHTNKHNFKVPFVCGARNLGEALRRITEGAAMIRTKGE-AGTGNVVEAVRHARTMFAEIRRLQTLDPDELFVAAKNLQAPYELVKQ 197          
BLAST of FC877876 vs. ExPASy Swiss-Prot
Match: PDXS_NATTJ (Pyridoxal biosynthesis lyase pdxS OS=Natranaerobius thermophilus (strain ATCC BAA-1301 / DSM 18059 / JW/NM-WN-LF) GN=pdxS PE=3 SV=1)

HSP 1 Score: 207.223 bits (526), Expect = 9.217e-53
Identity = 103/200 (51.50%), Postives = 147/200 (73.50%), Query Frame = 1
Query:  259 KKNPFSIKAGLAQMLRGGAIVEVSSVEQAKIAEAAGACSIMVSEP------SRPGIKRMPDPSLVKSVKRAVSVPVMSRVRVGHFVEAQILESIGLDYIDESEVLGLADEYNFINKHNFRFPFVCGCRNLGEALRRIREGAAMIRIQGDLLNSGNIVETVKNVRSLMGDIRILNNMDEDEVFAFAKKIAAPYDLVAQTKQ 840
            +K   ++K G+AQM +GG I++V++ EQAKIAE AGA ++M  E       +  G+ RM DP ++K +  AVS+PVM++ R+GHFVEA+ILE++G+DYIDESEVL  ADEY  I+K+ F  PFVCG RNLGEALRR+ EGA+M+R +G+   +GN+VE V+++R++M  IR + N+ +DE+   AK I APYDL+ Q K+
Sbjct:    4 EKGTETVKKGMAQMQKGGVIMDVTTPEQAKIAEKAGAVAVMALEKVPADIRAGGGVARMADPEVIKKIMDAVSIPVMAKARIGHFVEARILENLGVDYIDESEVLTPADEYYHIDKNKFTVPFVCGARNLGEALRRVGEGASMMRTKGE-AGTGNVVEAVRHIRTVMDGIRKVQNLPDDELMTEAKNIGAPYDLIKQVKE 202          
The following BLAST results are available for this feature:
BLAST of FC877876 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 208
Match NameE-valueIdentityDescription
PDXS_CHLSY9.516e-5855.84Pyridoxal biosynthesis lyase pdxS OS=Chloroflexus ... [more]
PDXS_CHLAA9.516e-5855.84Pyridoxal biosynthesis lyase pdxS OS=Chloroflexus ... [more]
PDXS_ROSCS1.623e-5754.77Pyridoxal biosynthesis lyase pdxS OS=Roseiflexus c... [more]
PDX1_SCHPO3.616e-5756.28Probable pyridoxine biosynthesis PDX1-like protein... [more]
PDXS_DEHSC1.519e-5556.99Pyridoxal biosynthesis lyase pdxS OS=Dehalococcoid... [more]
PDXS_DEHSB1.519e-5556.99Pyridoxal biosynthesis lyase pdxS OS=Dehalococcoid... [more]
PDXS_DEHE11.519e-5556.99Pyridoxal biosynthesis lyase pdxS OS=Dehalococcoid... [more]
PDX1_DICDI5.773e-5553.54Probable pyridoxine biosynthesis protein pdx1 OS=D... [more]
PDXS_HERA28.336e-5455.44Pyridoxal biosynthesis lyase pdxS OS=Herpetosiphon... [more]
PDXS_NATTJ9.217e-5351.50Pyridoxal biosynthesis lyase pdxS OS=Natranaerobiu... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA94CE03RM1 IVIA1 Citrus clementina cDNA clone IC0AAA94CE03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877876 ID=FC877876; Name=FC877876; organism=Citrus clementina; type=EST; length=841bp
TCGAAATTTCTACACTAATCAATCAATTCCCCACCGACTAACCCCACCTT
CGAAGCTCTTCAGAACCTTCTCGAACTCGCCCCAATCCTCACCCTCCCTT
CAATTTTATAAACCCTTTCTACAAAAAGAAACCCAGTACTCGATCAAACG
ATTCAATAACTACGCTTCTCGCATCAGTGAGACATTTTTACAAACGCCTT
TGCAATGGCCGAAGACGGAGCGGTCACAGTGTACGGTGGCAGCGCCATTA
CTGACGCCAAGAAGAACCCGTTTTCGATCAAAGCCGGCCTTGCCCAAATG
CTACGTGGCGGGGCCATTGTTGAAGTCTCCAGTGTGGAACAAGCCAAGAT
CGCCGAAGCAGCTGGCGCCTGTTCTATCATGGTATCCGAGCCCAGCCGGC
CCGGCATTAAGCGCATGCCGGATCCTTCTCTCGTTAAAAGCGTTAAACGC
GCCGTTTCAGTCCCCGTTATGTCACGTGTTCGTGTTGGGCATTTTGTTGA
AGCGCAGATTCTTGAAAGTATTGGGCTCGATTACATTGACGAGAGTGAGG
TTTTAGGATTAGCTGATGAATATAATTTTATTAACAAACATAACTTTAGG
TTCCCGTTTGTGTGTGGTTGTAGGAATCTTGGTGAAGCTTTGAGGAGAAT
TAGAGAAGGAGCTGCTATGATAAGAATACAAGGGGATTTGTTAAATTCTG
GTAATATTGTCGAGACTGTTAAAAATGTGAGGTCGTTAATGGGAGATATT
CGAATTTTGAATAACATGGATGAAGATGAGGTCTTCGCGTTTGCTAAGAA
GATAGCGGCTCCTTATGATTTGGTGGCTCAAACTAAACAAA
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