FC877876

Overview
NameFC877876
Unique NameFC877876
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length841
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11861 contig Ccv1_Contig11861:34..875. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC877876 vs. ExPASy Swiss-Prot
Match: PDXS_STAAS (Pyridoxal biosynthesis lyase pdxS OS=Staphylococcus aureus (strain MSSA476) GN=pdxS PE=3 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 1.989e-47
Identity = 97/193 (50.26%), Postives = 137/193 (70.98%), Query Frame = 1 
Query:  277 IKAGLAQMLRGGAIVEVSSVEQAKIAEAAGACSIMVSE--PS----RPGIKRMPDPSLVKSVKRAVSVPVMSRVRVGHFVEAQILESIGLDYIDESEVLGLADEYNFINKHNFRFPFVCGCRNLGEALRRIREGAAMIRIQGDLLNSGNIVETVKNVRSLMGDIRILNNMDEDEVFAFAKKIAAPYDLVAQTK 837
            +K G+A+M +GG I++V + EQA+IAE AGA ++M  E  PS      G+ RM +P +V+ V  AVS+PVM++ R+GH  EA++LE++G+DYIDESEVL  ADE   + K  F  PFVCGCRNLGEA RRI EGAAM+R +G+   +GNIVE V+++R +  ++  L  M++DE+  FAK I APY+++ Q K
Sbjct:   10 VKRGMAEMQKGGVIMDVVNAEQARIAEEAGAVAVMALERVPSDIRAAGGVARMANPKIVEEVMNAVSIPVMAKARIGHITEARVLEAMGVDYIDESEVLTPADEEYHLRKDQFTVPFVCGCRNLGEAARRIGEGAAMLRTKGE-PGTGNIVEAVRHMRQVNSEVSRLTVMNDDEIMTFAKDIGAPYEILKQIK 201
[Close]
BLAST of FC877876 vs. ExPASy Swiss-Prot
Match: PDXS_STAAR (Pyridoxal biosynthesis lyase pdxS OS=Staphylococcus aureus (strain MRSA252) GN=pdxS PE=3 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 1.989e-47
Identity = 97/193 (50.26%), Postives = 137/193 (70.98%), Query Frame = 1 
Query:  277 IKAGLAQMLRGGAIVEVSSVEQAKIAEAAGACSIMVSE--PS----RPGIKRMPDPSLVKSVKRAVSVPVMSRVRVGHFVEAQILESIGLDYIDESEVLGLADEYNFINKHNFRFPFVCGCRNLGEALRRIREGAAMIRIQGDLLNSGNIVETVKNVRSLMGDIRILNNMDEDEVFAFAKKIAAPYDLVAQTK 837
            +K G+A+M +GG I++V + EQA+IAE AGA ++M  E  PS      G+ RM +P +V+ V  AVS+PVM++ R+GH  EA++LE++G+DYIDESEVL  ADE   + K  F  PFVCGCRNLGEA RRI EGAAM+R +G+   +GNIVE V+++R +  ++  L  M++DE+  FAK I APY+++ Q K
Sbjct:   10 VKRGMAEMQKGGVIMDVVNAEQARIAEEAGAVAVMALERVPSDIRAAGGVARMANPKIVEEVMNAVSIPVMAKARIGHITEARVLEAMGVDYIDESEVLTPADEEYHLRKDQFTVPFVCGCRNLGEAARRIGEGAAMLRTKGE-PGTGNIVEAVRHMRQVNSEVSRLTVMNDDEIMTFAKDIGAPYEILKQIK 201
[Close]
BLAST of FC877876 vs. ExPASy Swiss-Prot
Match: PDXS_STAAN (Pyridoxal biosynthesis lyase pdxS OS=Staphylococcus aureus (strain N315) GN=pdxS PE=1 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 1.989e-47
Identity = 97/193 (50.26%), Postives = 137/193 (70.98%), Query Frame = 1 
Query:  277 IKAGLAQMLRGGAIVEVSSVEQAKIAEAAGACSIMVSE--PS----RPGIKRMPDPSLVKSVKRAVSVPVMSRVRVGHFVEAQILESIGLDYIDESEVLGLADEYNFINKHNFRFPFVCGCRNLGEALRRIREGAAMIRIQGDLLNSGNIVETVKNVRSLMGDIRILNNMDEDEVFAFAKKIAAPYDLVAQTK 837
            +K G+A+M +GG I++V + EQA+IAE AGA ++M  E  PS      G+ RM +P +V+ V  AVS+PVM++ R+GH  EA++LE++G+DYIDESEVL  ADE   + K  F  PFVCGCRNLGEA RRI EGAAM+R +G+   +GNIVE V+++R +  ++  L  M++DE+  FAK I APY+++ Q K
Sbjct:   10 VKRGMAEMQKGGVIMDVVNAEQARIAEEAGAVAVMALERVPSDIRAAGGVARMANPKIVEEVMNAVSIPVMAKARIGHITEARVLEAMGVDYIDESEVLTPADEEYHLRKDQFTVPFVCGCRNLGEAARRIGEGAAMLRTKGE-PGTGNIVEAVRHMRQVNSEVSRLTVMNDDEIMTFAKDIGAPYEILKQIK 201
[Close]
BLAST of FC877876 vs. ExPASy Swiss-Prot
Match: PDXS_STAAM (Pyridoxal biosynthesis lyase pdxS OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=pdxS PE=1 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 1.989e-47
Identity = 97/193 (50.26%), Postives = 137/193 (70.98%), Query Frame = 1 
Query:  277 IKAGLAQMLRGGAIVEVSSVEQAKIAEAAGACSIMVSE--PS----RPGIKRMPDPSLVKSVKRAVSVPVMSRVRVGHFVEAQILESIGLDYIDESEVLGLADEYNFINKHNFRFPFVCGCRNLGEALRRIREGAAMIRIQGDLLNSGNIVETVKNVRSLMGDIRILNNMDEDEVFAFAKKIAAPYDLVAQTK 837
            +K G+A+M +GG I++V + EQA+IAE AGA ++M  E  PS      G+ RM +P +V+ V  AVS+PVM++ R+GH  EA++LE++G+DYIDESEVL  ADE   + K  F  PFVCGCRNLGEA RRI EGAAM+R +G+   +GNIVE V+++R +  ++  L  M++DE+  FAK I APY+++ Q K
Sbjct:   10 VKRGMAEMQKGGVIMDVVNAEQARIAEEAGAVAVMALERVPSDIRAAGGVARMANPKIVEEVMNAVSIPVMAKARIGHITEARVLEAMGVDYIDESEVLTPADEEYHLRKDQFTVPFVCGCRNLGEAARRIGEGAAMLRTKGE-PGTGNIVEAVRHMRQVNSEVSRLTVMNDDEIMTFAKDIGAPYEILKQIK 201
[Close]
BLAST of FC877876 vs. ExPASy Swiss-Prot
Match: PDXS_STAAE (Pyridoxal biosynthesis lyase pdxS OS=Staphylococcus aureus (strain Newman) GN=pdxS PE=3 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 1.989e-47
Identity = 97/193 (50.26%), Postives = 137/193 (70.98%), Query Frame = 1 
Query:  277 IKAGLAQMLRGGAIVEVSSVEQAKIAEAAGACSIMVSE--PS----RPGIKRMPDPSLVKSVKRAVSVPVMSRVRVGHFVEAQILESIGLDYIDESEVLGLADEYNFINKHNFRFPFVCGCRNLGEALRRIREGAAMIRIQGDLLNSGNIVETVKNVRSLMGDIRILNNMDEDEVFAFAKKIAAPYDLVAQTK 837
            +K G+A+M +GG I++V + EQA+IAE AGA ++M  E  PS      G+ RM +P +V+ V  AVS+PVM++ R+GH  EA++LE++G+DYIDESEVL  ADE   + K  F  PFVCGCRNLGEA RRI EGAAM+R +G+   +GNIVE V+++R +  ++  L  M++DE+  FAK I APY+++ Q K
Sbjct:   10 VKRGMAEMQKGGVIMDVVNAEQARIAEEAGAVAVMALERVPSDIRAAGGVARMANPKIVEEVMNAVSIPVMAKARIGHITEARVLEAMGVDYIDESEVLTPADEEYHLRKDQFTVPFVCGCRNLGEAARRIGEGAAMLRTKGE-PGTGNIVEAVRHMRQVNSEVSRLTVMNDDEIMTFAKDIGAPYEILKQIK 201
[Close]
BLAST of FC877876 vs. ExPASy Swiss-Prot
Match: PDXS_STAAC (Pyridoxal biosynthesis lyase pdxS OS=Staphylococcus aureus (strain COL) GN=pdxS PE=3 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 1.989e-47
Identity = 97/193 (50.26%), Postives = 137/193 (70.98%), Query Frame = 1 
Query:  277 IKAGLAQMLRGGAIVEVSSVEQAKIAEAAGACSIMVSE--PS----RPGIKRMPDPSLVKSVKRAVSVPVMSRVRVGHFVEAQILESIGLDYIDESEVLGLADEYNFINKHNFRFPFVCGCRNLGEALRRIREGAAMIRIQGDLLNSGNIVETVKNVRSLMGDIRILNNMDEDEVFAFAKKIAAPYDLVAQTK 837
            +K G+A+M +GG I++V + EQA+IAE AGA ++M  E  PS      G+ RM +P +V+ V  AVS+PVM++ R+GH  EA++LE++G+DYIDESEVL  ADE   + K  F  PFVCGCRNLGEA RRI EGAAM+R +G+   +GNIVE V+++R +  ++  L  M++DE+  FAK I APY+++ Q K
Sbjct:   10 VKRGMAEMQKGGVIMDVVNAEQARIAEEAGAVAVMALERVPSDIRAAGGVARMANPKIVEEVMNAVSIPVMAKARIGHITEARVLEAMGVDYIDESEVLTPADEEYHLRKDQFTVPFVCGCRNLGEAARRIGEGAAMLRTKGE-PGTGNIVEAVRHMRQVNSEVSRLTVMNDDEIMTFAKDIGAPYEILKQIK 201
[Close]
BLAST of FC877876 vs. ExPASy Swiss-Prot
Match: PDXS_STAA9 (Pyridoxal biosynthesis lyase pdxS OS=Staphylococcus aureus (strain JH9) GN=pdxS PE=3 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 1.989e-47
Identity = 97/193 (50.26%), Postives = 137/193 (70.98%), Query Frame = 1 
Query:  277 IKAGLAQMLRGGAIVEVSSVEQAKIAEAAGACSIMVSE--PS----RPGIKRMPDPSLVKSVKRAVSVPVMSRVRVGHFVEAQILESIGLDYIDESEVLGLADEYNFINKHNFRFPFVCGCRNLGEALRRIREGAAMIRIQGDLLNSGNIVETVKNVRSLMGDIRILNNMDEDEVFAFAKKIAAPYDLVAQTK 837
            +K G+A+M +GG I++V + EQA+IAE AGA ++M  E  PS      G+ RM +P +V+ V  AVS+PVM++ R+GH  EA++LE++G+DYIDESEVL  ADE   + K  F  PFVCGCRNLGEA RRI EGAAM+R +G+   +GNIVE V+++R +  ++  L  M++DE+  FAK I APY+++ Q K
Sbjct:   10 VKRGMAEMQKGGVIMDVVNAEQARIAEEAGAVAVMALERVPSDIRAAGGVARMANPKIVEEVMNAVSIPVMAKARIGHITEARVLEAMGVDYIDESEVLTPADEEYHLRKDQFTVPFVCGCRNLGEAARRIGEGAAMLRTKGE-PGTGNIVEAVRHMRQVNSEVSRLTVMNDDEIMTFAKDIGAPYEILKQIK 201
[Close]
BLAST of FC877876 vs. ExPASy Swiss-Prot
Match: PDXS_STAA8 (Pyridoxal biosynthesis lyase pdxS OS=Staphylococcus aureus (strain NCTC 8325) GN=pdxS PE=3 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 1.989e-47
Identity = 97/193 (50.26%), Postives = 137/193 (70.98%), Query Frame = 1 
Query:  277 IKAGLAQMLRGGAIVEVSSVEQAKIAEAAGACSIMVSE--PS----RPGIKRMPDPSLVKSVKRAVSVPVMSRVRVGHFVEAQILESIGLDYIDESEVLGLADEYNFINKHNFRFPFVCGCRNLGEALRRIREGAAMIRIQGDLLNSGNIVETVKNVRSLMGDIRILNNMDEDEVFAFAKKIAAPYDLVAQTK 837
            +K G+A+M +GG I++V + EQA+IAE AGA ++M  E  PS      G+ RM +P +V+ V  AVS+PVM++ R+GH  EA++LE++G+DYIDESEVL  ADE   + K  F  PFVCGCRNLGEA RRI EGAAM+R +G+   +GNIVE V+++R +  ++  L  M++DE+  FAK I APY+++ Q K
Sbjct:   10 VKRGMAEMQKGGVIMDVVNAEQARIAEEAGAVAVMALERVPSDIRAAGGVARMANPKIVEEVMNAVSIPVMAKARIGHITEARVLEAMGVDYIDESEVLTPADEEYHLRKDQFTVPFVCGCRNLGEAARRIGEGAAMLRTKGE-PGTGNIVEAVRHMRQVNSEVSRLTVMNDDEIMTFAKDIGAPYEILKQIK 201
[Close]
BLAST of FC877876 vs. ExPASy Swiss-Prot
Match: PDXS_STAA3 (Pyridoxal biosynthesis lyase pdxS OS=Staphylococcus aureus (strain USA300) GN=pdxS PE=3 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 1.989e-47
Identity = 97/193 (50.26%), Postives = 137/193 (70.98%), Query Frame = 1 
Query:  277 IKAGLAQMLRGGAIVEVSSVEQAKIAEAAGACSIMVSE--PS----RPGIKRMPDPSLVKSVKRAVSVPVMSRVRVGHFVEAQILESIGLDYIDESEVLGLADEYNFINKHNFRFPFVCGCRNLGEALRRIREGAAMIRIQGDLLNSGNIVETVKNVRSLMGDIRILNNMDEDEVFAFAKKIAAPYDLVAQTK 837
            +K G+A+M +GG I++V + EQA+IAE AGA ++M  E  PS      G+ RM +P +V+ V  AVS+PVM++ R+GH  EA++LE++G+DYIDESEVL  ADE   + K  F  PFVCGCRNLGEA RRI EGAAM+R +G+   +GNIVE V+++R +  ++  L  M++DE+  FAK I APY+++ Q K
Sbjct:   10 VKRGMAEMQKGGVIMDVVNAEQARIAEEAGAVAVMALERVPSDIRAAGGVARMANPKIVEEVMNAVSIPVMAKARIGHITEARVLEAMGVDYIDESEVLTPADEEYHLRKDQFTVPFVCGCRNLGEAARRIGEGAAMLRTKGE-PGTGNIVEAVRHMRQVNSEVSRLTVMNDDEIMTFAKDIGAPYEILKQIK 201
[Close]
BLAST of FC877876 vs. ExPASy Swiss-Prot
Match: PDXS_STAA2 (Pyridoxal biosynthesis lyase pdxS OS=Staphylococcus aureus (strain JH1) GN=pdxS PE=3 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 1.989e-47
Identity = 97/193 (50.26%), Postives = 137/193 (70.98%), Query Frame = 1 
Query:  277 IKAGLAQMLRGGAIVEVSSVEQAKIAEAAGACSIMVSE--PS----RPGIKRMPDPSLVKSVKRAVSVPVMSRVRVGHFVEAQILESIGLDYIDESEVLGLADEYNFINKHNFRFPFVCGCRNLGEALRRIREGAAMIRIQGDLLNSGNIVETVKNVRSLMGDIRILNNMDEDEVFAFAKKIAAPYDLVAQTK 837
            +K G+A+M +GG I++V + EQA+IAE AGA ++M  E  PS      G+ RM +P +V+ V  AVS+PVM++ R+GH  EA++LE++G+DYIDESEVL  ADE   + K  F  PFVCGCRNLGEA RRI EGAAM+R +G+   +GNIVE V+++R +  ++  L  M++DE+  FAK I APY+++ Q K
Sbjct:   10 VKRGMAEMQKGGVIMDVVNAEQARIAEEAGAVAVMALERVPSDIRAAGGVARMANPKIVEEVMNAVSIPVMAKARIGHITEARVLEAMGVDYIDESEVLTPADEEYHLRKDQFTVPFVCGCRNLGEAARRIGEGAAMLRTKGE-PGTGNIVEAVRHMRQVNSEVSRLTVMNDDEIMTFAKDIGAPYEILKQIK 201
The following BLAST results are available for this feature:
BLAST of FC877876 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 208
Match NameE-valueIdentityDescription
PDXS_STAAS1.989e-4750.26Pyridoxal biosynthesis lyase pdxS OS=Staphylococcu... [more]
PDXS_STAAR1.989e-4750.26Pyridoxal biosynthesis lyase pdxS OS=Staphylococcu... [more]
PDXS_STAAN1.989e-4750.26Pyridoxal biosynthesis lyase pdxS OS=Staphylococcu... [more]
PDXS_STAAM1.989e-4750.26Pyridoxal biosynthesis lyase pdxS OS=Staphylococcu... [more]
PDXS_STAAE1.989e-4750.26Pyridoxal biosynthesis lyase pdxS OS=Staphylococcu... [more]
PDXS_STAAC1.989e-4750.26Pyridoxal biosynthesis lyase pdxS OS=Staphylococcu... [more]
PDXS_STAA91.989e-4750.26Pyridoxal biosynthesis lyase pdxS OS=Staphylococcu... [more]
PDXS_STAA81.989e-4750.26Pyridoxal biosynthesis lyase pdxS OS=Staphylococcu... [more]
PDXS_STAA31.989e-4750.26Pyridoxal biosynthesis lyase pdxS OS=Staphylococcu... [more]
PDXS_STAA21.989e-4750.26Pyridoxal biosynthesis lyase pdxS OS=Staphylococcu... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA94CE03RM1 IVIA1 Citrus clementina cDNA clone IC0AAA94CE03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877876 ID=FC877876; Name=FC877876; organism=Citrus clementina; type=EST; length=841bp
TCGAAATTTCTACACTAATCAATCAATTCCCCACCGACTAACCCCACCTT
CGAAGCTCTTCAGAACCTTCTCGAACTCGCCCCAATCCTCACCCTCCCTT
CAATTTTATAAACCCTTTCTACAAAAAGAAACCCAGTACTCGATCAAACG
ATTCAATAACTACGCTTCTCGCATCAGTGAGACATTTTTACAAACGCCTT
TGCAATGGCCGAAGACGGAGCGGTCACAGTGTACGGTGGCAGCGCCATTA
CTGACGCCAAGAAGAACCCGTTTTCGATCAAAGCCGGCCTTGCCCAAATG
CTACGTGGCGGGGCCATTGTTGAAGTCTCCAGTGTGGAACAAGCCAAGAT
CGCCGAAGCAGCTGGCGCCTGTTCTATCATGGTATCCGAGCCCAGCCGGC
CCGGCATTAAGCGCATGCCGGATCCTTCTCTCGTTAAAAGCGTTAAACGC
GCCGTTTCAGTCCCCGTTATGTCACGTGTTCGTGTTGGGCATTTTGTTGA
AGCGCAGATTCTTGAAAGTATTGGGCTCGATTACATTGACGAGAGTGAGG
TTTTAGGATTAGCTGATGAATATAATTTTATTAACAAACATAACTTTAGG
TTCCCGTTTGTGTGTGGTTGTAGGAATCTTGGTGAAGCTTTGAGGAGAAT
TAGAGAAGGAGCTGCTATGATAAGAATACAAGGGGATTTGTTAAATTCTG
GTAATATTGTCGAGACTGTTAAAAATGTGAGGTCGTTAATGGGAGATATT
CGAATTTTGAATAACATGGATGAAGATGAGGTCTTCGCGTTTGCTAAGAA
GATAGCGGCTCCTTATGATTTGGTGGCTCAAACTAAACAAA
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