FC877876

Overview
NameFC877876
Unique NameFC877876
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length841
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11861 contig Ccv1_Contig11861:34..875. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC877876 vs. ExPASy Swiss-Prot
Match: PDXS_STAA1 (Pyridoxal biosynthesis lyase pdxS OS=Staphylococcus aureus (strain Mu3 / ATCC 700698) GN=pdxS PE=3 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 1.989e-47
Identity = 97/193 (50.26%), Postives = 137/193 (70.98%), Query Frame = 1
Query:  277 IKAGLAQMLRGGAIVEVSSVEQAKIAEAAGACSIMVSE--PS----RPGIKRMPDPSLVKSVKRAVSVPVMSRVRVGHFVEAQILESIGLDYIDESEVLGLADEYNFINKHNFRFPFVCGCRNLGEALRRIREGAAMIRIQGDLLNSGNIVETVKNVRSLMGDIRILNNMDEDEVFAFAKKIAAPYDLVAQTK 837
            +K G+A+M +GG I++V + EQA+IAE AGA ++M  E  PS      G+ RM +P +V+ V  AVS+PVM++ R+GH  EA++LE++G+DYIDESEVL  ADE   + K  F  PFVCGCRNLGEA RRI EGAAM+R +G+   +GNIVE V+++R +  ++  L  M++DE+  FAK I APY+++ Q K
Sbjct:   10 VKRGMAEMQKGGVIMDVVNAEQARIAEEAGAVAVMALERVPSDIRAAGGVARMANPKIVEEVMNAVSIPVMAKARIGHITEARVLEAMGVDYIDESEVLTPADEEYHLRKDQFTVPFVCGCRNLGEAARRIGEGAAMLRTKGE-PGTGNIVEAVRHMRQVNSEVSRLTVMNDDEIMTFAKDIGAPYEILKQIK 201          
BLAST of FC877876 vs. ExPASy Swiss-Prot
Match: PDXS_MYCLE (Pyridoxal biosynthesis lyase pdxS OS=Mycobacterium leprae GN=pdxS PE=3 SV=2)

HSP 1 Score: 189.504 bits (480), Expect = 1.989e-47
Identity = 97/191 (50.79%), Postives = 140/191 (73.30%), Query Frame = 1
Query:  277 IKAGLAQMLRGGAIVEVSSVEQAKIAEAAGACSIMVSE--PS----RPGIKRMPDPSLVKSVKRAVSVPVMSRVRVGHFVEAQILESIGLDYIDESEVLGLADEYNFINKHNFRFPFVCGCRNLGEALRRIREGAAMIRIQGDLLNSGNIVETVKNVRSLMGDIRILNNMDEDEVFAFAKKIAAPYDLVAQ 831
            +K G+A+ML+GG I++V   EQA+IAE +GA ++M  E  PS    + G+ RM DP +++S+  AV++PVM++ R+GHFVEAQIL+S+G+DYIDESEVL  AD  + I+K  F  PFVCG  NLGEALRRI EGAAMIR +G+   +G++     ++R++ GDIR L ++ EDE++  AK++ APY+LV +
Sbjct:   22 VKRGMAEMLKGGVIMDVVIPEQARIAEGSGAVAVMALERVPSDIRAQGGVSRMSDPDMIESIIAAVTIPVMAKARIGHFVEAQILQSLGVDYIDESEVLTPADYTHHIDKWKFTVPFVCGATNLGEALRRINEGAAMIRSKGE-AGTGDVSNATTHMRAIAGDIRRLTSLSEDELYVAAKELHAPYELVIE 211          
BLAST of FC877876 vs. ExPASy Swiss-Prot
Match: PDXS_MYCLB (Pyridoxal biosynthesis lyase pdxS OS=Mycobacterium leprae (strain Br4923) GN=pdxS PE=3 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 1.989e-47
Identity = 97/191 (50.79%), Postives = 140/191 (73.30%), Query Frame = 1
Query:  277 IKAGLAQMLRGGAIVEVSSVEQAKIAEAAGACSIMVSE--PS----RPGIKRMPDPSLVKSVKRAVSVPVMSRVRVGHFVEAQILESIGLDYIDESEVLGLADEYNFINKHNFRFPFVCGCRNLGEALRRIREGAAMIRIQGDLLNSGNIVETVKNVRSLMGDIRILNNMDEDEVFAFAKKIAAPYDLVAQ 831
            +K G+A+ML+GG I++V   EQA+IAE +GA ++M  E  PS    + G+ RM DP +++S+  AV++PVM++ R+GHFVEAQIL+S+G+DYIDESEVL  AD  + I+K  F  PFVCG  NLGEALRRI EGAAMIR +G+   +G++     ++R++ GDIR L ++ EDE++  AK++ APY+LV +
Sbjct:   22 VKRGMAEMLKGGVIMDVVIPEQARIAEGSGAVAVMALERVPSDIRAQGGVSRMSDPDMIESIIAAVTIPVMAKARIGHFVEAQILQSLGVDYIDESEVLTPADYTHHIDKWKFTVPFVCGATNLGEALRRINEGAAMIRSKGE-AGTGDVSNATTHMRAIAGDIRRLTSLSEDELYVAAKELHAPYELVIE 211          
BLAST of FC877876 vs. ExPASy Swiss-Prot
Match: PDXS_LISMO (Pyridoxal biosynthesis lyase pdxS OS=Listeria monocytogenes GN=pdxS PE=3 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 1.989e-47
Identity = 98/193 (50.78%), Postives = 138/193 (71.50%), Query Frame = 1
Query:  277 IKAGLAQMLRGGAIVEVSSVEQAKIAEAAGACSIMVSE--PS----RPGIKRMPDPSLVKSVKRAVSVPVMSRVRVGHFVEAQILESIGLDYIDESEVLGLADEYNFINKHNFRFPFVCGCRNLGEALRRIREGAAMIRIQGDLLNSGNIVETVKNVRSLMGDIRILNNMDEDEVFAFAKKIAAPYDLVAQTK 837
            +K G+AQM +GG I++V + EQAKIAE AGA ++M  E  PS      G+ RM DP +V+ V +AVS+PVM++ R+GH  EA++LE++G+DYIDESEVL  AD+   + K +F  PFVCGCR++GEALRRI EGAAM+R +G+   +GNIVE V+++R + G IR +  M +DE+   AK   APY+L+ + K
Sbjct:   10 VKRGMAQMQKGGVIMDVVNAEQAKIAEEAGAVAVMALERVPSDIRAAGGVARMADPRIVEEVMKAVSIPVMAKARIGHITEARVLEAMGVDYIDESEVLTPADDEFHLLKSDFTVPFVCGCRDIGEALRRIGEGAAMLRTKGE-PGTGNIVEAVRHMRQVNGQIRQIAGMTDDELMVAAKNFGAPYELIKEIK 201          
BLAST of FC877876 vs. ExPASy Swiss-Prot
Match: PDXS_LISIN (Pyridoxal biosynthesis lyase pdxS OS=Listeria innocua GN=pdxS PE=3 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 1.989e-47
Identity = 99/193 (51.30%), Postives = 138/193 (71.50%), Query Frame = 1
Query:  277 IKAGLAQMLRGGAIVEVSSVEQAKIAEAAGACSIMVSE--PS----RPGIKRMPDPSLVKSVKRAVSVPVMSRVRVGHFVEAQILESIGLDYIDESEVLGLADEYNFINKHNFRFPFVCGCRNLGEALRRIREGAAMIRIQGDLLNSGNIVETVKNVRSLMGDIRILNNMDEDEVFAFAKKIAAPYDLVAQTK 837
            +K G+AQM +GG I++V + EQAKIAE AGA ++M  E  PS      G+ RM DP +V+ V  AVS+PVM++ R+GH  EA++LE++G+DYIDESEVL  AD+   + K +F  PFVCGCR++GEALRRI EGAAM+R +G+   +GNIVE V+++R + G IR + +M +DE+   AK   APY+LV + K
Sbjct:   10 VKRGMAQMQKGGVIMDVVNAEQAKIAEEAGAVAVMALERVPSDIRAAGGVARMADPRIVEEVMNAVSIPVMAKARIGHITEARVLEAMGVDYIDESEVLTPADDEFHLLKSDFTVPFVCGCRDIGEALRRIGEGAAMLRTKGE-PGTGNIVEAVRHMRQVNGQIRQIASMTDDELMVAAKNFGAPYELVKEIK 201          
BLAST of FC877876 vs. ExPASy Swiss-Prot
Match: PDXS_BIFLD (Pyridoxal biosynthesis lyase pdxS OS=Bifidobacterium longum (strain DJO10A) GN=pdxS PE=3 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 1.989e-47
Identity = 95/193 (49.22%), Postives = 141/193 (73.06%), Query Frame = 1
Query:  262 KNPFSIKAGLAQMLRGGAIVEVSSVEQAKIAEAAGACSIMVSEP------SRPGIKRMPDPSLVKSVKRAVSVPVMSRVRVGHFVEAQILESIGLDYIDESEVLGLADEYNFINKHNFRFPFVCGCRNLGEALRRIREGAAMIRIQGDLLNSGNIVETVKNVRSLMGDIRILNNMDEDEVFAFAKKIAAPYDL 822
            +N   +   LAQML+GG I++V++ EQAKIA+ AGAC++M  E       +  G+ RM DP+++K ++ AVS+PVM++VR+GH  EA+IL++I +DYIDESEVL  AD+   I+K+ F  PFVCG +NLGEALRRI EGAAMIR +G+   +G++++ V+++R++   IR L  + +DEV+  AK++A PYDL
Sbjct:    3 QNRAELNRNLAQMLKGGVIMDVTTPEQAKIAQDAGACAVMALERIPADIRAAGGVSRMSDPAMIKGIQEAVSIPVMAKVRIGHIAEARILQAIDIDYIDESEVLSPADDVYHIDKNQFDVPFVCGAKNLGEALRRIAEGAAMIRTKGE-PGTGDVIQAVRHMRTMNKQIRELVALRDDEVYEAAKQLAVPYDL 194          
BLAST of FC877876 vs. ExPASy Swiss-Prot
Match: PDXS_BACLD (Pyridoxal biosynthesis lyase pdxS OS=Bacillus licheniformis (strain DSM 13 / ATCC 14580) GN=pdxS PE=3 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 1.989e-47
Identity = 95/193 (49.22%), Postives = 138/193 (71.50%), Query Frame = 1
Query:  277 IKAGLAQMLRGGAIVEVSSVEQAKIAEAAGACSIMVSEP------SRPGIKRMPDPSLVKSVKRAVSVPVMSRVRVGHFVEAQILESIGLDYIDESEVLGLADEYNFINKHNFRFPFVCGCRNLGEALRRIREGAAMIRIQGDLLNSGNIVETVKNVRSLMGDIRILNNMDEDEVFAFAKKIAAPYDLVAQTK 837
            +K G+A+M +GG I++V + EQAKIAE AGA ++M  E       +  G+ RM DP++V+ V  AVS+PVM++ R+GH VEA++LE++G+DYIDESEVL  ADE   +NK+ F  PFVCGCR+LGEA RRI EGA+M+R +G+   +GNIVE V+++R +   +R +  M +DE+   AK + APY+L+ + K
Sbjct:    9 VKRGMAEMQKGGVIMDVVNAEQAKIAEEAGAVAVMALERVPADIRAAGGVARMADPTIVEEVMNAVSIPVMAKARIGHIVEARVLEALGVDYIDESEVLTPADEEFHLNKNEFTVPFVCGCRDLGEATRRIAEGASMLRTKGE-PGTGNIVEAVRHMRKVNAQVRKVVGMSDDELMTEAKNLGAPYELLKEIK 200          
BLAST of FC877876 vs. ExPASy Swiss-Prot
Match: PDX1_CERNC (Pyridoxine biosynthesis protein PDX1 OS=Cercospora nicotianae GN=PDX1 PE=1 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 1.989e-47
Identity = 94/199 (47.24%), Postives = 142/199 (71.36%), Query Frame = 1
Query:  262 KNPFSIKAGLAQMLRGGAIVEVSSVEQAKIAEAAGACSIMVSEP------SRPGIKRMPDPSLVKSVKRAVSVPVMSRVRVGHFVEAQILESIGLDYIDESEVLGLADEYNFINKHNFRFPFVCGCRNLGEALRRIREGAAMIRIQGDLLNSGNIVETVKNVRSLMGDIRILNNMDEDEVFAFAKKIAAPYDLVAQTKQ 840
            ++ F++K GLAQML+GG I++V + EQA+IAE AGAC++M  E          G+ RM DP ++K +  AV++PVM++ R+GHFVE QIL++IG+DYIDESEVL  AD  N I+K  +  PFVCGC+NLGEALRRI EGAAMIR +G+   +G++VE V++++++  +I   ++  + ++   A+++   Y+L+ QT Q
Sbjct:   53 QSSFAVKVGLAQMLKGGVIMDVVNAEQARIAEEAGACAVMALERVPADIRKDGGVARMSDPQMIKDIMNAVTIPVMAKSRIGHFVECQILQAIGVDYIDESEVLTPADPVNHIDKSVYNVPFVCGCKNLGEALRRISEGAAMIRTKGE-AGTGDVVEAVRHMQTVNAEIAKASSASDADLRMMARELQCDYNLLKQTAQ 250          
BLAST of FC877876 vs. ExPASy Swiss-Prot
Match: PDXS_METTH (Pyridoxal biosynthesis lyase pdxS OS=Methanobacterium thermoautotrophicum GN=pdxS PE=3 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 2.597e-47
Identity = 99/192 (51.56%), Postives = 139/192 (72.40%), Query Frame = 1
Query:  277 IKAGLAQMLRGGAIVEVSSVEQAKIAEAAGACSIMVSEP------SRPGIKRMPDPSLVKSVKRAVSVPVMSRVRVGHFVEAQILESIGLDYIDESEVLGLADEYNFINKHNFRFPFVCGCRNLGEALRRIREGAAMIRIQGDLLNSGNIVETVKNVRSLMGDIRILNNMDEDEVFAFAKKIAAPYDLVAQT 834
            +K G A+M +GG I++V + EQA IAE +GA ++M  E       +  G+ RM DP+ V+ +  AVS+PVM++VR+GHFVEAQ+LE++G+D IDESEVL  ADE   I+K  F  PFVCG RNLGEALRRI EGAAMIR +G+   +GNIVE V+++R +M +IR + N +E+E++  ++KI AP +LV +T
Sbjct:    8 LKKGFAKMTKGGVIMDVVNAEQAAIAEDSGAVAVMALEKVPADIRASGGVARMADPNKVQEIMDAVSIPVMAKVRIGHFVEAQVLEALGVDMIDESEVLTPADERFHIDKKKFTVPFVCGARNLGEALRRIDEGAAMIRTKGE-PGTGNIVEAVRHMRIMMSEIREIQNKEEEELWEVSRKIEAPLELVRET 198          
BLAST of FC877876 vs. ExPASy Swiss-Prot
Match: PDXS_CLOBM (Pyridoxal biosynthesis lyase pdxS OS=Clostridium botulinum (strain Loch Maree / Type A3) GN=pdxS PE=3 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 2.597e-47
Identity = 98/191 (51.31%), Postives = 140/191 (73.30%), Query Frame = 1
Query:  271 FSIKAGLAQMLRGGAIVEVSSVEQAKIAEAAGACSIMVSE--PS----RPGIKRMPDPSLVKSVKRAVSVPVMSRVRVGHFVEAQILESIGLDYIDESEVLGLADEYNFINKHNFRFPFVCGCRNLGEALRRIREGAAMIRIQGDLLNSGNIVETVKNVRSLMGDIRILNNMDEDEVFAFAKKIAAPYDLV 825
            + +   LAQML+ G I++V + EQAKIAE AGA ++M  E  PS    + G+ R  DP ++K +  AVS+PVM++VR+GHFVEAQILE+IG+DYIDESEVL  AD+   INK +F+ PFVCG RNLGEALRRI EGA+MIR +G+   +GN+VE V+++R++  ++R L    ++E+   AK++ AP++L+
Sbjct:    5 YELNKNLAQMLKDGVIMDVVNPEQAKIAEEAGAVAVMALERVPSDIRKQGGVARTSDPKMIKEIINAVSIPVMAKVRIGHFVEAQILEAIGVDYIDESEVLTPADDLFHINKKDFKVPFVCGARNLGEALRRIGEGASMIRTKGE-AGTGNVVEAVRHMRTISSEMRKLQLTPKEELMTVAKEMGAPFNLI 194          
The following BLAST results are available for this feature:
BLAST of FC877876 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 208
Match NameE-valueIdentityDescription
PDXS_STAA11.989e-4750.26Pyridoxal biosynthesis lyase pdxS OS=Staphylococcu... [more]
PDXS_MYCLE1.989e-4750.79Pyridoxal biosynthesis lyase pdxS OS=Mycobacterium... [more]
PDXS_MYCLB1.989e-4750.79Pyridoxal biosynthesis lyase pdxS OS=Mycobacterium... [more]
PDXS_LISMO1.989e-4750.78Pyridoxal biosynthesis lyase pdxS OS=Listeria mono... [more]
PDXS_LISIN1.989e-4751.30Pyridoxal biosynthesis lyase pdxS OS=Listeria inno... [more]
PDXS_BIFLD1.989e-4749.22Pyridoxal biosynthesis lyase pdxS OS=Bifidobacteri... [more]
PDXS_BACLD1.989e-4749.22Pyridoxal biosynthesis lyase pdxS OS=Bacillus lich... [more]
PDX1_CERNC1.989e-4747.24Pyridoxine biosynthesis protein PDX1 OS=Cercospora... [more]
PDXS_METTH2.597e-4751.56Pyridoxal biosynthesis lyase pdxS OS=Methanobacter... [more]
PDXS_CLOBM2.597e-4751.31Pyridoxal biosynthesis lyase pdxS OS=Clostridium b... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA94CE03RM1 IVIA1 Citrus clementina cDNA clone IC0AAA94CE03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877876 ID=FC877876; Name=FC877876; organism=Citrus clementina; type=EST; length=841bp
TCGAAATTTCTACACTAATCAATCAATTCCCCACCGACTAACCCCACCTT
CGAAGCTCTTCAGAACCTTCTCGAACTCGCCCCAATCCTCACCCTCCCTT
CAATTTTATAAACCCTTTCTACAAAAAGAAACCCAGTACTCGATCAAACG
ATTCAATAACTACGCTTCTCGCATCAGTGAGACATTTTTACAAACGCCTT
TGCAATGGCCGAAGACGGAGCGGTCACAGTGTACGGTGGCAGCGCCATTA
CTGACGCCAAGAAGAACCCGTTTTCGATCAAAGCCGGCCTTGCCCAAATG
CTACGTGGCGGGGCCATTGTTGAAGTCTCCAGTGTGGAACAAGCCAAGAT
CGCCGAAGCAGCTGGCGCCTGTTCTATCATGGTATCCGAGCCCAGCCGGC
CCGGCATTAAGCGCATGCCGGATCCTTCTCTCGTTAAAAGCGTTAAACGC
GCCGTTTCAGTCCCCGTTATGTCACGTGTTCGTGTTGGGCATTTTGTTGA
AGCGCAGATTCTTGAAAGTATTGGGCTCGATTACATTGACGAGAGTGAGG
TTTTAGGATTAGCTGATGAATATAATTTTATTAACAAACATAACTTTAGG
TTCCCGTTTGTGTGTGGTTGTAGGAATCTTGGTGAAGCTTTGAGGAGAAT
TAGAGAAGGAGCTGCTATGATAAGAATACAAGGGGATTTGTTAAATTCTG
GTAATATTGTCGAGACTGTTAAAAATGTGAGGTCGTTAATGGGAGATATT
CGAATTTTGAATAACATGGATGAAGATGAGGTCTTCGCGTTTGCTAAGAA
GATAGCGGCTCCTTATGATTTGGTGGCTCAAACTAAACAAA
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