FC877876

Overview
NameFC877876
Unique NameFC877876
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length841
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11861 contig Ccv1_Contig11861:34..875. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC877876 vs. ExPASy Swiss-Prot
Match: PDXS_TROWT (Pyridoxal biosynthesis lyase pdxS OS=Tropheryma whipplei (strain Twist) GN=pdxS PE=3 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 3.392e-47
Identity = 98/193 (50.78%), Postives = 137/193 (70.98%), Query Frame = 1
Query:  274 SIKAGLAQMLRGGAIVEVSSVEQAKIAEAAGACSIMVSEP------SRPGIKRMPDPSLVKSVKRAVSVPVMSRVRVGHFVEAQILESIGLDYIDESEVLGLADEYNFINKHNFRFPFVCGCRNLGEALRRIREGAAMIRIQGDLLNSGNIVETVKNVRSLMGDIRILNNMDEDEVFAFAKKIAAPYDLVAQT 834
            ++K GLAQML+GG I++V + +QAKIAE AGA ++M  E       +  G+ RM DP L++ V  +VS+PVM++VR+GHF EAQIL+S+ +DYIDESEVL +AD    I+K  F  PFVCG  NLGEALRRI EGA+MIR +G+   +G+I +  K++R+++ +I  L    EDE+ A A+K+ AP DLV +T
Sbjct:    5 NLKVGLAQMLKGGVIMDVVTPDQAKIAEDAGAVAVMALEKIPSDIRASGGVSRMSDPGLIERVMDSVSIPVMAKVRIGHFAEAQILQSLKVDYIDESEVLSVADSSYHIDKRKFTVPFVCGATNLGEALRRISEGASMIRSKGE-AGTGDIAQATKHIRAILSEISALTQAREDELPARARKLGAPIDLVRET 196          
BLAST of FC877876 vs. ExPASy Swiss-Prot
Match: PDXS_MYCPA (Pyridoxal biosynthesis lyase pdxS OS=Mycobacterium paratuberculosis GN=pdxS PE=3 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 3.392e-47
Identity = 95/191 (49.74%), Postives = 139/191 (72.77%), Query Frame = 1
Query:  277 IKAGLAQMLRGGAIVEVSSVEQAKIAEAAGACSIMVSEP------SRPGIKRMPDPSLVKSVKRAVSVPVMSRVRVGHFVEAQILESIGLDYIDESEVLGLADEYNFINKHNFRFPFVCGCRNLGEALRRIREGAAMIRIQGDLLNSGNIVETVKNVRSLMGDIRILNNMDEDEVFAFAKKIAAPYDLVAQ 831
            +K G+A+ML+GG I++V + EQAKIAE AGA ++M  E       ++ G+ RM DP +++ +  AV++PVM++ R+GHFVEAQIL+S+G+DYIDESEVL  AD  + I+K  F  PFVCG  NLGEALRRI EGAAMIR +G+   +G++     ++R++ G+IR L ++ EDE++  AK++ APY+LV +
Sbjct:   18 VKRGMAEMLKGGVIMDVVTPEQAKIAEGAGAVAVMALERVPADIRAQGGVSRMSDPDMIEGIISAVTIPVMAKARIGHFVEAQILQSLGVDYIDESEVLTPADYTHHIDKWKFTVPFVCGATNLGEALRRINEGAAMIRSKGE-AGTGDVSNATTHMRAIGGEIRRLMSLSEDELYVAAKELQAPYELVVE 207          
BLAST of FC877876 vs. ExPASy Swiss-Prot
Match: PDXS_MYCA1 (Pyridoxal biosynthesis lyase pdxS OS=Mycobacterium avium (strain 104) GN=pdxS PE=3 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 3.392e-47
Identity = 95/191 (49.74%), Postives = 139/191 (72.77%), Query Frame = 1
Query:  277 IKAGLAQMLRGGAIVEVSSVEQAKIAEAAGACSIMVSEP------SRPGIKRMPDPSLVKSVKRAVSVPVMSRVRVGHFVEAQILESIGLDYIDESEVLGLADEYNFINKHNFRFPFVCGCRNLGEALRRIREGAAMIRIQGDLLNSGNIVETVKNVRSLMGDIRILNNMDEDEVFAFAKKIAAPYDLVAQ 831
            +K G+A+ML+GG I++V + EQAKIAE AGA ++M  E       ++ G+ RM DP +++ +  AV++PVM++ R+GHFVEAQIL+S+G+DYIDESEVL  AD  + I+K  F  PFVCG  NLGEALRRI EGAAMIR +G+   +G++     ++R++ G+IR L ++ EDE++  AK++ APY+LV +
Sbjct:   18 VKRGMAEMLKGGVIMDVVTPEQAKIAEGAGAVAVMALERVPADIRAQGGVSRMSDPDMIEGIISAVTIPVMAKARIGHFVEAQILQSLGVDYIDESEVLTPADYTHHIDKWKFTVPFVCGATNLGEALRRINEGAAMIRSKGE-AGTGDVSNATTHMRAIGGEIRRLMSLSEDELYVAAKELQAPYELVVE 207          
BLAST of FC877876 vs. ExPASy Swiss-Prot
Match: PDXS_LISMH (Pyridoxal biosynthesis lyase pdxS OS=Listeria monocytogenes serotype 4a (strain HCC23) GN=pdxS PE=3 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 3.392e-47
Identity = 98/193 (50.78%), Postives = 137/193 (70.98%), Query Frame = 1
Query:  277 IKAGLAQMLRGGAIVEVSSVEQAKIAEAAGACSIMVSE--PS----RPGIKRMPDPSLVKSVKRAVSVPVMSRVRVGHFVEAQILESIGLDYIDESEVLGLADEYNFINKHNFRFPFVCGCRNLGEALRRIREGAAMIRIQGDLLNSGNIVETVKNVRSLMGDIRILNNMDEDEVFAFAKKIAAPYDLVAQTK 837
            +K G+AQM +GG I++V + EQAKIAE AGA ++M  E  PS      G+ RM DP +V+ V  AVS+PVM++ R+GH  EA++LE++G+DYIDESEVL  AD+   + K +F  PFVCGCR++GEALRRI EGAAM+R +G+   +GNIVE V+++R + G IR +  M +DE+   AK   APY+L+ + K
Sbjct:   10 VKRGMAQMQKGGVIMDVVNAEQAKIAEEAGAVAVMALERVPSDIRAAGGVARMADPRIVEEVMNAVSIPVMAKARIGHITEARVLEAMGVDYIDESEVLTPADDEFHLLKSDFTVPFVCGCRDIGEALRRIGEGAAMLRTKGE-PGTGNIVEAVRHMRQVNGQIRQIAGMTDDELMVAAKNFGAPYELIKEIK 201          
BLAST of FC877876 vs. ExPASy Swiss-Prot
Match: PDXS_LISMF (Pyridoxal biosynthesis lyase pdxS OS=Listeria monocytogenes serotype 4b (strain F2365) GN=pdxS PE=3 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 3.392e-47
Identity = 98/193 (50.78%), Postives = 137/193 (70.98%), Query Frame = 1
Query:  277 IKAGLAQMLRGGAIVEVSSVEQAKIAEAAGACSIMVSE--PS----RPGIKRMPDPSLVKSVKRAVSVPVMSRVRVGHFVEAQILESIGLDYIDESEVLGLADEYNFINKHNFRFPFVCGCRNLGEALRRIREGAAMIRIQGDLLNSGNIVETVKNVRSLMGDIRILNNMDEDEVFAFAKKIAAPYDLVAQTK 837
            +K G+AQM +GG I++V + EQAKIAE AGA ++M  E  PS      G+ RM DP +V+ V  AVS+PVM++ R+GH  EA++LE++G+DYIDESEVL  AD+   + K +F  PFVCGCR++GEALRRI EGAAM+R +G+   +GNIVE V+++R + G IR +  M +DE+   AK   APY+L+ + K
Sbjct:   10 VKRGMAQMQKGGVIMDVVNAEQAKIAEEAGAVAVMALERVPSDIRAAGGVARMADPRIVEEVMNAVSIPVMAKARIGHITEARVLEAMGVDYIDESEVLTPADDEFHLLKSDFTVPFVCGCRDIGEALRRIGEGAAMLRTKGE-PGTGNIVEAVRHMRQVNGQIRQIAGMTDDELMVAAKNFGAPYELIKEIK 201          
BLAST of FC877876 vs. ExPASy Swiss-Prot
Match: PDXS_LISMC (Pyridoxal biosynthesis lyase pdxS OS=Listeria monocytogenes serotype 4b (strain Clip81459) GN=pdxS PE=3 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 3.392e-47
Identity = 98/193 (50.78%), Postives = 137/193 (70.98%), Query Frame = 1
Query:  277 IKAGLAQMLRGGAIVEVSSVEQAKIAEAAGACSIMVSE--PS----RPGIKRMPDPSLVKSVKRAVSVPVMSRVRVGHFVEAQILESIGLDYIDESEVLGLADEYNFINKHNFRFPFVCGCRNLGEALRRIREGAAMIRIQGDLLNSGNIVETVKNVRSLMGDIRILNNMDEDEVFAFAKKIAAPYDLVAQTK 837
            +K G+AQM +GG I++V + EQAKIAE AGA ++M  E  PS      G+ RM DP +V+ V  AVS+PVM++ R+GH  EA++LE++G+DYIDESEVL  AD+   + K +F  PFVCGCR++GEALRRI EGAAM+R +G+   +GNIVE V+++R + G IR +  M +DE+   AK   APY+L+ + K
Sbjct:   10 VKRGMAQMQKGGVIMDVVNAEQAKIAEEAGAVAVMALERVPSDIRAAGGVARMADPRIVEEVMNAVSIPVMAKARIGHITEARVLEAMGVDYIDESEVLTPADDEFHLLKSDFTVPFVCGCRDIGEALRRIGEGAAMLRTKGE-PGTGNIVEAVRHMRQVNGQIRQIAGMTDDELMVAAKNFGAPYELIKEIK 201          
BLAST of FC877876 vs. ExPASy Swiss-Prot
Match: PDXS_HAEIN (Pyridoxal biosynthesis lyase pdxS OS=Haemophilus influenzae GN=pdxS PE=1 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 3.392e-47
Identity = 96/194 (49.48%), Postives = 140/194 (72.16%), Query Frame = 1
Query:  262 KNPFSIKAGLAQMLRGGAIVEVSSVEQAKIAEAAGACSIMVSEP------SRPGIKRMPDPSLVKSVKRAVSVPVMSRVRVGHFVEAQILESIGLDYIDESEVLGLADEYNFINKHNFRFPFVCGCRNLGEALRRIREGAAMIRIQGDLLNSGNIVETVKNVRSLMGDIRILNNMDEDEVFAFAKKIAAPYDLV 825
            +N + +   LAQML+GG I++V + EQA+IAEAAGA ++M  E       +  G+ RM DP ++K ++ AVS+PVM++VR+GHFVEAQILE+I +DYIDESEVL  AD    ++K  F+ PFVCG ++LGEALRRI EGA+MIR +G+   +G+IV+ V+++R +  +IR + N+ EDE++  AK +  P +LV
Sbjct:    3 ENRYELNKNLAQMLKGGVIMDVQNPEQARIAEAAGAAAVMALERIPADIRAVGGVSRMSDPKMIKEIQGAVSIPVMAKVRIGHFVEAQILEAIEIDYIDESEVLSPADNRFHVDKKEFQVPFVCGAKDLGEALRRIAEGASMIRTKGE-PGTGDIVQAVRHMRMMSQEIRRIQNLREDELYVAAKDLQVPVELV 195          
BLAST of FC877876 vs. ExPASy Swiss-Prot
Match: PDXS_HAEIG (Pyridoxal biosynthesis lyase pdxS OS=Haemophilus influenzae (strain PittGG) GN=pdxS PE=3 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 3.392e-47
Identity = 96/194 (49.48%), Postives = 140/194 (72.16%), Query Frame = 1
Query:  262 KNPFSIKAGLAQMLRGGAIVEVSSVEQAKIAEAAGACSIMVSEP------SRPGIKRMPDPSLVKSVKRAVSVPVMSRVRVGHFVEAQILESIGLDYIDESEVLGLADEYNFINKHNFRFPFVCGCRNLGEALRRIREGAAMIRIQGDLLNSGNIVETVKNVRSLMGDIRILNNMDEDEVFAFAKKIAAPYDLV 825
            +N + +   LAQML+GG I++V + EQA+IAEAAGA ++M  E       +  G+ RM DP ++K ++ AVS+PVM++VR+GHFVEAQILE+I +DYIDESEVL  AD    ++K  F+ PFVCG ++LGEALRRI EGA+MIR +G+   +G+IV+ V+++R +  +IR + N+ EDE++  AK +  P +LV
Sbjct:    3 ENRYELNKNLAQMLKGGVIMDVQNPEQARIAEAAGAAAVMALERIPADIRAVGGVSRMSDPKMIKEIQGAVSIPVMAKVRIGHFVEAQILEAIEIDYIDESEVLSPADNRFHVDKKEFQVPFVCGAKDLGEALRRIAEGASMIRTKGE-PGTGDIVQAVRHMRMMSQEIRRIQNLREDELYVAAKDLQVPVELV 195          
BLAST of FC877876 vs. ExPASy Swiss-Prot
Match: PDXS_HAEIE (Pyridoxal biosynthesis lyase pdxS OS=Haemophilus influenzae (strain PittEE) GN=pdxS PE=3 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 3.392e-47
Identity = 96/194 (49.48%), Postives = 140/194 (72.16%), Query Frame = 1
Query:  262 KNPFSIKAGLAQMLRGGAIVEVSSVEQAKIAEAAGACSIMVSEP------SRPGIKRMPDPSLVKSVKRAVSVPVMSRVRVGHFVEAQILESIGLDYIDESEVLGLADEYNFINKHNFRFPFVCGCRNLGEALRRIREGAAMIRIQGDLLNSGNIVETVKNVRSLMGDIRILNNMDEDEVFAFAKKIAAPYDLV 825
            +N + +   LAQML+GG I++V + EQA+IAEAAGA ++M  E       +  G+ RM DP ++K ++ AVS+PVM++VR+GHFVEAQILE+I +DYIDESEVL  AD    ++K  F+ PFVCG ++LGEALRRI EGA+MIR +G+   +G+IV+ V+++R +  +IR + N+ EDE++  AK +  P +LV
Sbjct:    3 ENRYELNKNLAQMLKGGVIMDVQNPEQARIAEAAGAAAVMALERIPADIRAVGGVSRMSDPKMIKEIQGAVSIPVMAKVRIGHFVEAQILEAIEIDYIDESEVLSPADNRFHVDKKEFQVPFVCGAKDLGEALRRIAEGASMIRTKGE-PGTGDIVQAVRHMRMMSQEIRRIQNLREDELYVAAKDLQVPVELV 195          
BLAST of FC877876 vs. ExPASy Swiss-Prot
Match: PDXS_HAEI8 (Pyridoxal biosynthesis lyase pdxS OS=Haemophilus influenzae (strain 86-028NP) GN=pdxS PE=3 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 3.392e-47
Identity = 96/194 (49.48%), Postives = 140/194 (72.16%), Query Frame = 1
Query:  262 KNPFSIKAGLAQMLRGGAIVEVSSVEQAKIAEAAGACSIMVSEP------SRPGIKRMPDPSLVKSVKRAVSVPVMSRVRVGHFVEAQILESIGLDYIDESEVLGLADEYNFINKHNFRFPFVCGCRNLGEALRRIREGAAMIRIQGDLLNSGNIVETVKNVRSLMGDIRILNNMDEDEVFAFAKKIAAPYDLV 825
            +N + +   LAQML+GG I++V + EQA+IAEAAGA ++M  E       +  G+ RM DP ++K ++ AVS+PVM++VR+GHFVEAQILE+I +DYIDESEVL  AD    ++K  F+ PFVCG ++LGEALRRI EGA+MIR +G+   +G+IV+ V+++R +  +IR + N+ EDE++  AK +  P +LV
Sbjct:    3 ENRYELNKNLAQMLKGGVIMDVQNPEQARIAEAAGAAAVMALERIPADIRAVGGVSRMSDPKMIKEIQGAVSIPVMAKVRIGHFVEAQILEAIEIDYIDESEVLSPADNRFHVDKKEFQVPFVCGAKDLGEALRRIAEGASMIRTKGE-PGTGDIVQAVRHMRMMSQEIRRIQNLREDELYVAAKDLQVPVELV 195          
The following BLAST results are available for this feature:
BLAST of FC877876 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 208
Match NameE-valueIdentityDescription
PDXS_TROWT3.392e-4750.78Pyridoxal biosynthesis lyase pdxS OS=Tropheryma wh... [more]
PDXS_MYCPA3.392e-4749.74Pyridoxal biosynthesis lyase pdxS OS=Mycobacterium... [more]
PDXS_MYCA13.392e-4749.74Pyridoxal biosynthesis lyase pdxS OS=Mycobacterium... [more]
PDXS_LISMH3.392e-4750.78Pyridoxal biosynthesis lyase pdxS OS=Listeria mono... [more]
PDXS_LISMF3.392e-4750.78Pyridoxal biosynthesis lyase pdxS OS=Listeria mono... [more]
PDXS_LISMC3.392e-4750.78Pyridoxal biosynthesis lyase pdxS OS=Listeria mono... [more]
PDXS_HAEIN3.392e-4749.48Pyridoxal biosynthesis lyase pdxS OS=Haemophilus i... [more]
PDXS_HAEIG3.392e-4749.48Pyridoxal biosynthesis lyase pdxS OS=Haemophilus i... [more]
PDXS_HAEIE3.392e-4749.48Pyridoxal biosynthesis lyase pdxS OS=Haemophilus i... [more]
PDXS_HAEI83.392e-4749.48Pyridoxal biosynthesis lyase pdxS OS=Haemophilus i... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA94CE03RM1 IVIA1 Citrus clementina cDNA clone IC0AAA94CE03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877876 ID=FC877876; Name=FC877876; organism=Citrus clementina; type=EST; length=841bp
TCGAAATTTCTACACTAATCAATCAATTCCCCACCGACTAACCCCACCTT
CGAAGCTCTTCAGAACCTTCTCGAACTCGCCCCAATCCTCACCCTCCCTT
CAATTTTATAAACCCTTTCTACAAAAAGAAACCCAGTACTCGATCAAACG
ATTCAATAACTACGCTTCTCGCATCAGTGAGACATTTTTACAAACGCCTT
TGCAATGGCCGAAGACGGAGCGGTCACAGTGTACGGTGGCAGCGCCATTA
CTGACGCCAAGAAGAACCCGTTTTCGATCAAAGCCGGCCTTGCCCAAATG
CTACGTGGCGGGGCCATTGTTGAAGTCTCCAGTGTGGAACAAGCCAAGAT
CGCCGAAGCAGCTGGCGCCTGTTCTATCATGGTATCCGAGCCCAGCCGGC
CCGGCATTAAGCGCATGCCGGATCCTTCTCTCGTTAAAAGCGTTAAACGC
GCCGTTTCAGTCCCCGTTATGTCACGTGTTCGTGTTGGGCATTTTGTTGA
AGCGCAGATTCTTGAAAGTATTGGGCTCGATTACATTGACGAGAGTGAGG
TTTTAGGATTAGCTGATGAATATAATTTTATTAACAAACATAACTTTAGG
TTCCCGTTTGTGTGTGGTTGTAGGAATCTTGGTGAAGCTTTGAGGAGAAT
TAGAGAAGGAGCTGCTATGATAAGAATACAAGGGGATTTGTTAAATTCTG
GTAATATTGTCGAGACTGTTAAAAATGTGAGGTCGTTAATGGGAGATATT
CGAATTTTGAATAACATGGATGAAGATGAGGTCTTCGCGTTTGCTAAGAA
GATAGCGGCTCCTTATGATTTGGTGGCTCAAACTAAACAAA
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