FC877876

Overview
NameFC877876
Unique NameFC877876
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length841
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC877876 vs. ExPASy Swiss-Prot
Match: PDXS_BACA2 (Pyridoxal biosynthesis lyase pdxS OS=Bacillus amyloliquefaciens (strain FZB42) GN=pdxS PE=3 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 3.392e-47
Identity = 95/194 (48.97%), Postives = 139/194 (71.65%), Query Frame = 1
Query:  277 IKAGLAQMLRGGAIVEVSSVEQAKIAEAAGACSIMVSEP------SRPGIKRMPDPSLVKSVKRAVSVPVMSRVRVGHFVEAQILESIGLDYIDESEVLGLADEYNFINKHNFRFPFVCGCRNLGEALRRIREGAAMIRIQGDLLNSGNIVETVKNVRSLMGDIRILNNMDEDEVFAFAKKIAAPYDLVAQTKQ 840
            +K G+A+M +GG I++V + EQAKIAE AGA ++M  E       +  G+ RM DP++V+ V  AVS+PVM++ R+GH VEA++LE++G+DYIDESEVL  ADE   +NK+ +  PFVCGCR+LGEA RRI EGA+M+R +G+   +GNIVE V+++R +   +R +  M +DE+   AK + APY+L+ Q K+
Sbjct:    9 VKRGMAEMQKGGVIMDVVNAEQAKIAEEAGAVAVMALERVPADIRAAGGVARMADPTIVEEVMNAVSIPVMAKARIGHIVEARVLEAMGVDYIDESEVLTPADEEFHLNKNEYTVPFVCGCRDLGEATRRIAEGASMLRTKGE-PGTGNIVEAVRHMRKVNAQVRKVVAMSDDELMTEAKNLGAPYELLLQIKR 201          
BLAST of FC877876 vs. ExPASy Swiss-Prot
Match: PDXS_STRAW (Pyridoxal biosynthesis lyase pdxS OS=Streptomyces avermitilis GN=pdxS PE=3 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 4.431e-47
Identity = 96/194 (49.48%), Postives = 137/194 (70.62%), Query Frame = 1
Query:  277 IKAGLAQMLRGGAIVEVSSVEQAKIAEAAGACSIMVSEP------SRPGIKRMPDPSLVKSVKRAVSVPVMSRVRVGHFVEAQILESIGLDYIDESEVLGLADEYNFINKHNFRFPFVCGCRNLGEALRRIREGAAMIRIQGDLLNSGNIVETVKNVRSLMGDIRILNNMDEDEVFAFAKKIAAPYDLVAQTKQ 840
            +K G+A+ L+GG I++V + EQAKIAE AGA ++M  E          G+ RM DP +++ +  AVS+PVM++ R+GHFVEAQ+L+S+G+DYIDESEVL  ADE N  +K  F  PFVCG  NLGEALRRI EGAAMIR +G+   +GN+VE V+++R +  +I  L   D +E++A AK++ APY++V +  +
Sbjct:   19 VKRGMAEQLKGGVIMDVVTPEQAKIAEDAGAVAVMALERVPADIRKDGGVARMSDPDMIEGIISAVSIPVMAKSRIGHFVEAQVLQSLGVDYIDESEVLTPADEVNHSDKWAFTTPFVCGATNLGEALRRIAEGAAMIRSKGE-AGTGNVVEAVRHLRQIKNEIARLRGYDNNELYAAAKELRAPYEIVKEVAE 211          
BLAST of FC877876 vs. ExPASy Swiss-Prot
Match: PDXS_LISW6 (Pyridoxal biosynthesis lyase pdxS OS=Listeria welshimeri serovar 6b (strain ATCC 35897 / DSM 20650 / SLCC5334) GN=pdxS PE=3 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 4.431e-47
Identity = 99/193 (51.30%), Postives = 137/193 (70.98%), Query Frame = 1
Query:  277 IKAGLAQMLRGGAIVEVSSVEQAKIAEAAGACSIMVSE--PS----RPGIKRMPDPSLVKSVKRAVSVPVMSRVRVGHFVEAQILESIGLDYIDESEVLGLADEYNFINKHNFRFPFVCGCRNLGEALRRIREGAAMIRIQGDLLNSGNIVETVKNVRSLMGDIRILNNMDEDEVFAFAKKIAAPYDLVAQTK 837
            +K G+AQM +GG I++V + EQAKIAE AGA ++M  E  PS      G+ RM DP +V+ V  AVS+PVM++ R+GH  EA++LE++G+DYIDESEVL  AD+   + K +F  PFVCGCR++GEALRRI EGAAM+R +G+   +GNIVE V+++R + G IR +  M +DE+   AK   APY+LV + K
Sbjct:   10 VKRGMAQMQKGGVIMDVVNAEQAKIAEDAGAVAVMALERVPSDIRAAGGVARMADPRIVEEVMNAVSIPVMAKARIGHITEARVLEAMGVDYIDESEVLTPADDEFHLLKSDFTVPFVCGCRDIGEALRRIGEGAAMLRTKGE-PGTGNIVEAVRHMRQVNGQIRQIVGMTDDELMVAAKNFGAPYELVKEIK 201          
BLAST of FC877876 vs. ExPASy Swiss-Prot
Match: PDXS_GEOSW (Pyridoxal biosynthesis lyase pdxS OS=Geobacillus sp. (strain WCH70) GN=pdxS PE=3 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 4.431e-47
Identity = 95/194 (48.97%), Postives = 141/194 (72.68%), Query Frame = 1
Query:  277 IKAGLAQMLRGGAIVEVSSVEQAKIAEAAGACSIMVSEP------SRPGIKRMPDPSLVKSVKRAVSVPVMSRVRVGHFVEAQILESIGLDYIDESEVLGLADEYNFINKHNFRFPFVCGCRNLGEALRRIREGAAMIRIQGDLLNSGNIVETVKNVRSLMGDIRILNNMDEDEVFAFAKKIAAPYDLVAQTKQ 840
            +K G+A+M +GG I++V + EQAKIAEAAGA ++M  E       +  G+ RM DP++++ V +AVS+PVM++ R+GH+VEA++LE++G+DYIDESEVL  ADE   I+K  F  PFVCGCR+LGEA RRI EGA+M+R +G+   +GNIVE V+++R +   IR + +M EDE+   AK + AP +++ + K+
Sbjct:    9 VKRGMAEMQKGGVIMDVVNAEQAKIAEAAGAVAVMALERVPADIRAAGGVARMADPTVIEEVMKAVSIPVMAKARIGHYVEARVLEALGVDYIDESEVLTPADEEFHIDKRQFTVPFVCGCRDLGEASRRIAEGASMLRTKGE-PGTGNIVEAVRHMRKVNAQIRKVVSMSEDELVTEAKNLGAPVEVLREIKR 201          
BLAST of FC877876 vs. ExPASy Swiss-Prot
Match: PDXS_BACCI (Pyridoxal biosynthesis lyase pdxS OS=Bacillus circulans GN=pdxS PE=3 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 4.431e-47
Identity = 95/189 (50.26%), Postives = 140/189 (74.07%), Query Frame = 1
Query:  277 IKAGLAQMLRGGAIVEVSSVEQAKIAEAAGACSIMVSE--PS----RPGIKRMPDPSLVKSVKRAVSVPVMSRVRVGHFVEAQILESIGLDYIDESEVLGLADEYNFINKHNFRFPFVCGCRNLGEALRRIREGAAMIRIQGDLLNSGNIVETVKNVRSLMGDIRILNNMDEDEVFAFAKKIAAPYDLV 825
            +K G+A+M +GG I++V + EQAK+AEAAGA ++M  E  PS      G+ RM DP++++ V + VS+PVM++ R+GH VEA++LE++G DYIDESEVL  ADE   I+K +F  PFVCG +++GEALRRI EGA+M+R +G+   +GNIVE V+++R +   IR + ++ +DE++A AK + APYDLV
Sbjct:    8 VKRGMAEMQKGGVIMDVMNAEQAKVAEAAGASAVMALERVPSDIRAAGGVARMADPTVLEEVMKVVSIPVMAKARIGHIVEARVLEALGADYIDESEVLTPADEVFHIDKKDFTVPFVCGAKDIGEALRRINEGASMLRTKGE-PGTGNIVEAVRHMRLIQSQIRKIQSLAKDELYAEAKNLGAPYDLV 195          
BLAST of FC877876 vs. ExPASy Swiss-Prot
Match: PDXS_BIFAA (Pyridoxal biosynthesis lyase pdxS OS=Bifidobacterium adolescentis (strain ATCC 15703 / DSM 20083) GN=pdxS PE=3 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 5.787e-47
Identity = 93/192 (48.44%), Postives = 141/192 (73.44%), Query Frame = 1
Query:  265 NPFSIKAGLAQMLRGGAIVEVSSVEQAKIAEAAGACSIMVSEP------SRPGIKRMPDPSLVKSVKRAVSVPVMSRVRVGHFVEAQILESIGLDYIDESEVLGLADEYNFINKHNFRFPFVCGCRNLGEALRRIREGAAMIRIQGDLLNSGNIVETVKNVRSLMGDIRILNNMDEDEVFAFAKKIAAPYDL 822
            N   +   LAQML+GG I++V++ EQAKIA+ AGAC++M  E       +  G+ RM DP+++K ++ AVS+PVM++VR+GH  EA+IL++I +DYIDESEVL  AD+   I+K+ F  PFVCG +NLGEALRR+ EGA+MIR +G+   +G++++ V+++R++   IR L ++ +DEV+  AK++A PYDL
Sbjct:    4 NRNELNKNLAQMLKGGVIMDVTTPEQAKIAQDAGACAVMALERIPADIRAAGGVSRMSDPAMIKGIQEAVSIPVMAKVRIGHIAEARILQAIEIDYIDESEVLSPADDVYHIDKNRFDVPFVCGAKNLGEALRRVAEGASMIRTKGE-PGTGDVIQAVRHMRTMNKQIRELVSLRDDEVYEAAKQLAVPYDL 194          
BLAST of FC877876 vs. ExPASy Swiss-Prot
Match: PDXS_TROW8 (Pyridoxal biosynthesis lyase pdxS OS=Tropheryma whipplei (strain TW08/27) GN=pdxS PE=3 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 9.870e-47
Identity = 97/193 (50.26%), Postives = 137/193 (70.98%), Query Frame = 1
Query:  274 SIKAGLAQMLRGGAIVEVSSVEQAKIAEAAGACSIMVSEP------SRPGIKRMPDPSLVKSVKRAVSVPVMSRVRVGHFVEAQILESIGLDYIDESEVLGLADEYNFINKHNFRFPFVCGCRNLGEALRRIREGAAMIRIQGDLLNSGNIVETVKNVRSLMGDIRILNNMDEDEVFAFAKKIAAPYDLVAQT 834
            ++K GLAQML+GG I++V + +QAKIAE AGA ++M  E       +  G+ RM DP L++ V  +VS+PVM++VR+GHF EAQIL+S+ +DYIDESEVL +AD    I+K  F  PFVCG  NLGEALRRI EGA+MIR +G+   +G+I +  K++R+++ +I  L    EDE+ A A+++ AP DLV +T
Sbjct:    5 NLKVGLAQMLKGGVIMDVVTPDQAKIAEDAGAVAVMALEKIPSDIRASGGVSRMSDPGLIERVMDSVSIPVMAKVRIGHFAEAQILQSLKVDYIDESEVLSVADSSYHIDKRKFTVPFVCGATNLGEALRRISEGASMIRSKGE-AGTGDIAQATKHIRAILSEISALTQAREDELPARARELGAPIDLVRET 196          
BLAST of FC877876 vs. ExPASy Swiss-Prot
Match: PDXS_BIFA0 (Pyridoxal biosynthesis lyase pdxS OS=Bifidobacterium animalis subsp. lactis (strain AD011) GN=pdxS PE=3 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 9.870e-47
Identity = 92/188 (48.94%), Postives = 139/188 (73.94%), Query Frame = 1
Query:  277 IKAGLAQMLRGGAIVEVSSVEQAKIAEAAGACSIMVSEP------SRPGIKRMPDPSLVKSVKRAVSVPVMSRVRVGHFVEAQILESIGLDYIDESEVLGLADEYNFINKHNFRFPFVCGCRNLGEALRRIREGAAMIRIQGDLLNSGNIVETVKNVRSLMGDIRILNNMDEDEVFAFAKKIAAPYDL 822
            +   LAQML+GG I++V++ EQA+IAE AGAC++M  E       +  G+ RM DP+++K ++ AVS+PVM++VR+GH  EA+IL++I +DYIDESEVL  AD+   I+K  F  PFVCG +NLGEALRRI EGA+MIR +G+   +G++++ V+++R++   IR L ++ +DEV+  AK++A PY+L
Sbjct:    8 LNRNLAQMLKGGVIMDVTTPEQARIAEDAGACAVMALERIPADIRAAGGVSRMSDPAMIKGIQEAVSIPVMAKVRIGHIAEARILQAIEIDYIDESEVLSPADDVYHIDKREFDVPFVCGAKNLGEALRRIEEGASMIRTKGE-PGTGDVIQAVRHMRTMTKQIRELASLRDDEVYEAAKQLAVPYEL 194          
BLAST of FC877876 vs. ExPASy Swiss-Prot
Match: PDXS_SALTO (Pyridoxal biosynthesis lyase pdxS OS=Salinispora tropica (strain ATCC BAA-916 / DSM 44818 / CNB-440) GN=pdxS PE=3 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 1.289e-46
Identity = 97/191 (50.79%), Postives = 137/191 (71.73%), Query Frame = 1
Query:  277 IKAGLAQMLRGGAIVEVSSVEQAKIAEAAGACSIMVSE--PS----RPGIKRMPDPSLVKSVKRAVSVPVMSRVRVGHFVEAQILESIGLDYIDESEVLGLADEYNFINKHNFRFPFVCGCRNLGEALRRIREGAAMIRIQGDLLNSGNIVETVKNVRSLMGDIRILNNMDEDEVFAFAKKIAAPYDLVAQ 831
            +K G+A+ML+GG I++V + EQAKIAE AGA ++M  E  PS    + G+ RM DP ++ S+  AVS+PVM++VR+GHFVEAQIL+S+G+DY+DESEVL  AD  N ++K  F  PFVCG  NLGEALRRI EGAAMIR +G+   +G++     ++R +  +IR L ++  DE++  AK + APY+LV +
Sbjct:   21 VKRGMAEMLKGGVIMDVVTAEQAKIAEDAGAVAVMALERVPSDIRAQGGVSRMSDPDMIDSIMDAVSIPVMAKVRIGHFVEAQILQSLGVDYVDESEVLTPADYANHVDKWAFTVPFVCGATNLGEALRRITEGAAMIRSKGE-AGTGDVSNATTHMRGIRTEIRRLQSLPTDELYLAAKDLQAPYELVKE 210          
BLAST of FC877876 vs. ExPASy Swiss-Prot
Match: PDXS_METKA (Pyridoxal biosynthesis lyase pdxS OS=Methanopyrus kandleri GN=pdxS PE=3 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 1.289e-46
Identity = 95/197 (48.22%), Postives = 139/197 (70.56%), Query Frame = 1
Query:  259 KKNPFSIKAGLAQMLRGGAIVEVSSVEQAKIAEAAGACSIMVSEP------SRPGIKRMPDPSLVKSVKRAVSVPVMSRVRVGHFVEAQILESIGLDYIDESEVLGLADEYNFINKHNFRFPFVCGCRNLGEALRRIREGAAMIRIQGDLLNSGNIVETVKNVRSLMGDIRILNNMDEDEVFAFAKKIAAPYDLVAQ 831
            K   + +K G A+ML+GG +++V++VEQA+IAE AGA ++MV E       +  G+ RM DP+ ++ +   V++PVM++ R+GH  EAQ+LE+IG+D IDESEVL  ADE + INK  F  PFVCG RNLGEALRRI EGAAMIR +G+   +GN+ E V+++R +  +I  L  +D++E++  AK+   P+DLVA+
Sbjct:    2 KTGTWRVKTGFARMLKGGVVMDVTNVEQAQIAEDAGAVAVMVLEKVPADIRAAGGVARMCDPAKIEEIMDHVTIPVMAKCRIGHVAEAQVLEAIGVDMIDESEVLTPADEEHHINKWEFEVPFVCGARNLGEALRRIAEGAAMIRTKGE-AGTGNVAEAVRHMRIIRREISELTRLDKEELYGKAKEYGVPFDLVAE 197          
The following BLAST results are available for this feature:
BLAST of FC877876 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 208
Match NameE-valueIdentityDescription
PDXS_BACA23.392e-4748.97Pyridoxal biosynthesis lyase pdxS OS=Bacillus amyl... [more]
PDXS_STRAW4.431e-4749.48Pyridoxal biosynthesis lyase pdxS OS=Streptomyces ... [more]
PDXS_LISW64.431e-4751.30Pyridoxal biosynthesis lyase pdxS OS=Listeria wels... [more]
PDXS_GEOSW4.431e-4748.97Pyridoxal biosynthesis lyase pdxS OS=Geobacillus s... [more]
PDXS_BACCI4.431e-4750.26Pyridoxal biosynthesis lyase pdxS OS=Bacillus circ... [more]
PDXS_BIFAA5.787e-4748.44Pyridoxal biosynthesis lyase pdxS OS=Bifidobacteri... [more]
PDXS_TROW89.870e-4750.26Pyridoxal biosynthesis lyase pdxS OS=Tropheryma wh... [more]
PDXS_BIFA09.870e-4748.94Pyridoxal biosynthesis lyase pdxS OS=Bifidobacteri... [more]
PDXS_SALTO1.289e-4650.79Pyridoxal biosynthesis lyase pdxS OS=Salinispora t... [more]
PDXS_METKA1.289e-4648.22Pyridoxal biosynthesis lyase pdxS OS=Methanopyrus ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionIC0AAA94CE03RM1 IVIA1 Citrus clementina cDNA clone IC0AAA94CE03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877876 ID=FC877876; Name=FC877876; organism=Citrus clementina; type=EST; length=841bp
TCGAAATTTCTACACTAATCAATCAATTCCCCACCGACTAACCCCACCTT
CGAAGCTCTTCAGAACCTTCTCGAACTCGCCCCAATCCTCACCCTCCCTT
CAATTTTATAAACCCTTTCTACAAAAAGAAACCCAGTACTCGATCAAACG
ATTCAATAACTACGCTTCTCGCATCAGTGAGACATTTTTACAAACGCCTT
TGCAATGGCCGAAGACGGAGCGGTCACAGTGTACGGTGGCAGCGCCATTA
CTGACGCCAAGAAGAACCCGTTTTCGATCAAAGCCGGCCTTGCCCAAATG
CTACGTGGCGGGGCCATTGTTGAAGTCTCCAGTGTGGAACAAGCCAAGAT
CGCCGAAGCAGCTGGCGCCTGTTCTATCATGGTATCCGAGCCCAGCCGGC
CCGGCATTAAGCGCATGCCGGATCCTTCTCTCGTTAAAAGCGTTAAACGC
GCCGTTTCAGTCCCCGTTATGTCACGTGTTCGTGTTGGGCATTTTGTTGA
AGCGCAGATTCTTGAAAGTATTGGGCTCGATTACATTGACGAGAGTGAGG
TTTTAGGATTAGCTGATGAATATAATTTTATTAACAAACATAACTTTAGG
TTCCCGTTTGTGTGTGGTTGTAGGAATCTTGGTGAAGCTTTGAGGAGAAT
TAGAGAAGGAGCTGCTATGATAAGAATACAAGGGGATTTGTTAAATTCTG
GTAATATTGTCGAGACTGTTAAAAATGTGAGGTCGTTAATGGGAGATATT
CGAATTTTGAATAACATGGATGAAGATGAGGTCTTCGCGTTTGCTAAGAA
GATAGCGGCTCCTTATGATTTGGTGGCTCAAACTAAACAAA
back to top