FC877876

Overview
NameFC877876
Unique NameFC877876
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length841
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC877876 vs. ExPASy Swiss-Prot
Match: PDXS_THEGJ (Pyridoxal biosynthesis lyase pdxS OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=pdxS PE=3 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 5.605e-42
Identity = 88/192 (45.83%), Postives = 131/192 (68.23%), Query Frame = 1
Query:  259 KKNPFSIKAGLAQMLRGGAIVEVSSVEQAKIAEAAGACSIMVSEP------SRPGIKRMPDPSLVKSVKRAVSVPVMSRVRVGHFVEAQILESIGLDYIDESEVLGLADEYNFINKHNFRFPFVCGCRNLGEALRRIREGAAMIRIQGDLLNSGNIVETVKNVRSLMGDIRILNNMDEDEVFAFAKKIAAPY 816
            KK    +K G A+M++GG I++V++ EQA+IAE AGA ++M             G+ RM     ++ +  AV++PVM++VR+GH  EA+ILE++G+D IDESEVL  +D Y  I+K  F+ PFVCG RNLGEA+RRI EGAAM+R +G+   +GNI+E V++VR L  +I +L  M +++++  A+K A PY
Sbjct:    9 KKGTERLKRGFAKMVKGGVIMDVTNAEQARIAEEAGAVAVMALHRVPADIRKAGGVARMAPIEKIQEIMDAVTIPVMAKVRIGHVAEARILEALGVDMIDESEVLTPSDPYFHIDKREFKIPFVCGNRNLGEAVRRIWEGAAMMRTKGE-AGTGNIIEAVRHVRLLKDNIALLQRMTDEQIYGVAEKFAEPY 199          
BLAST of FC877876 vs. ExPASy Swiss-Prot
Match: PDXS_METMP (Pyridoxal biosynthesis lyase pdxS OS=Methanococcus maripaludis GN=pdxS PE=3 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 7.320e-42
Identity = 94/199 (47.24%), Postives = 140/199 (70.35%), Query Frame = 1
Query:  277 IKAGLAQMLRGGAIVEVSSVEQAKIAEAAGACSIMVSE--PS----RPGIKRMPDPSLVKSVKRAVSVPVMSRVRVGHFVEAQILESIGLDYIDESEVLGLADEYNFINKHNFRFPFVCGCRNLGEALRRIREGAAMIRIQGDLLNSGNIVETVKNVRSL-MGDIRILNNMD---EDEVFAFAK-KIAAPYDLVAQTKQ 840
            +K G A+M++ G +++V++VEQA IAE AGA ++M  E  P+    + G+ RM DP ++  +K AVS+PVM++ R+GH+VEAQ+LESIG+D +DESEVL  ADE N I+K  F  PFVCG RNLGEALRRI EGAAMIR +G+   +GN+VE VK++R++  G  R++   +   E E+   A+ ++  P +L+++  +
Sbjct:    9 LKRGFAKMVKHGVVMDVTNVEQALIAEEAGATAVMALERVPADIRVQGGVARMSDPEMILEIKDAVSIPVMAKARIGHYVEAQVLESIGVDMVDESEVLTPADEVNHIDKRAFTAPFVCGARNLGEALRRIDEGAAMIRTKGE-AGTGNVVEAVKHMRAVNEGIARVIGYKEMGLEAELIQMARNELKVPMELISEVAE 206          
BLAST of FC877876 vs. ExPASy Swiss-Prot
Match: PDXS_METJA (Pyridoxal biosynthesis lyase pdxS OS=Methanocaldococcus jannaschii GN=pdxS PE=1 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 9.560e-42
Identity = 94/198 (47.47%), Postives = 133/198 (67.17%), Query Frame = 1
Query:  259 KKNPFSIKAGLAQMLRGGAIVEVSSVEQAKIAEAAGACSIMVSEP------SRPGIKRMPDPSLVKSVKRAVSVPVMSRVRVGHFVEAQILESIGLDYIDESEVLGLADEYNFINKHNFRFPFVCGCRNLGEALRRIREGAAMIRIQGDLLNSGNIVETVKNVRSLMGDIRILNNMDEDEVFAFAKKIAAPYDLVAQT 834
            KK    +K G A+M++ G +++V++VEQA+IAE AGA ++M  E       +  G+ RM DP+L++ +  AVS+PVM++ R+GH  EA +LE+IG+D IDESEVL  AD +  I K  F  PFVCG RNLGEA+RRI EGAAMIR +G+   +GNIVE V+++R +   I  L  M ++EV+  AK  A  Y  +A+T
Sbjct:    2 KKGTDLLKKGFAKMVKHGVVMDVTNVEQAQIAEEAGAVAVMALERVPADIRAAGGVARMSDPALIEEIMDAVSIPVMAKCRIGHTTEALVLEAIGVDMIDESEVLTQADPFFHIYKKKFNVPFVCGARNLGEAVRRIWEGAAMIRTKGE-AGTGNIVEAVRHMRLMNEAIAQLQRMTDEEVYGVAKFYANRYAELAKT 198          
BLAST of FC877876 vs. ExPASy Swiss-Prot
Match: PDXS_PYRKO (Pyridoxal biosynthesis lyase pdxS OS=Pyrococcus kodakaraensis GN=pdxS PE=3 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 1.249e-41
Identity = 90/186 (48.39%), Postives = 128/186 (68.82%), Query Frame = 1
Query:  277 IKAGLAQMLRGGAIVEVSSVEQAKIAEAAGACSIMVSEP------SRPGIKRMPDPSLVKSVKRAVSVPVMSRVRVGHFVEAQILESIGLDYIDESEVLGLADEYNFINKHNFRFPFVCGCRNLGEALRRIREGAAMIRIQGDLLNSGNIVETVKNVRSLMGDIRILNNMDEDEVFAFAKKIAAPY 816
            +K G A+M++GG I++V++ EQA+IAE AGA S+M             G+ RM     ++ +  AV++PVM++VR+GH  EA+ILE++G+D IDESEVL  +D +  I+K  F  PFVCG RNLGEA+RRI EGAAMIR +G+   +GNIVE V++VR +   IR +  M +D+V+A A+K A PY
Sbjct:   15 LKRGFAKMVKGGVIMDVTNAEQARIAEEAGAVSVMALHRVPADIRKAGGVARMAPIEKIQEIMDAVTIPVMAKVRIGHVAEAKILEALGVDMIDESEVLTPSDPFFHIDKREFTVPFVCGARNLGEAVRRIWEGAAMIRTKGE-AGTGNIVEAVRHVRLVAEGIRQIQAMTDDQVYAVAEKFAEPY 199          
BLAST of FC877876 vs. ExPASy Swiss-Prot
Match: PDXS_PYRFU (Pyridoxal biosynthesis lyase pdxS OS=Pyrococcus furiosus GN=pdxS PE=3 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 2.130e-41
Identity = 88/192 (45.83%), Postives = 130/192 (67.71%), Query Frame = 1
Query:  259 KKNPFSIKAGLAQMLRGGAIVEVSSVEQAKIAEAAGACSIMVSEP------SRPGIKRMPDPSLVKSVKRAVSVPVMSRVRVGHFVEAQILESIGLDYIDESEVLGLADEYNFINKHNFRFPFVCGCRNLGEALRRIREGAAMIRIQGDLLNSGNIVETVKNVRSLMGDIRILNNMDEDEVFAFAKKIAAPY 816
            +K    +K G A+M++GG I++V++ EQA+IAE AGA ++M             G+ RM     ++ +  AV++PVM++VR+GH  EA+ILE++G+D IDESEVL  AD +  I K  F  PFVCG RNLGEA+RRI EGAAMIR +G+   +GNI+E V++VR +  +IR++  M ++E++  A+K A PY
Sbjct:    9 EKGTERLKRGFAKMVKGGVIMDVTNAEQARIAEEAGAVAVMALHKVPADIRKAGGVARMAPVEKIQEIMDAVTIPVMAKVRIGHEAEARILEALGVDMIDESEVLTPADPFFHIYKKKFTVPFVCGARNLGEAVRRIWEGAAMIRTKGE-AGTGNIIEAVRHVRLVNENIRLIQRMTDEEIYGVAEKFAEPY 199          
BLAST of FC877876 vs. ExPASy Swiss-Prot
Match: PDXS_PYRAB (Pyridoxal biosynthesis lyase pdxS OS=Pyrococcus abyssi GN=pdxS PE=3 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 8.093e-41
Identity = 88/192 (45.83%), Postives = 129/192 (67.19%), Query Frame = 1
Query:  259 KKNPFSIKAGLAQMLRGGAIVEVSSVEQAKIAEAAGACSIMVSEP------SRPGIKRMPDPSLVKSVKRAVSVPVMSRVRVGHFVEAQILESIGLDYIDESEVLGLADEYNFINKHNFRFPFVCGCRNLGEALRRIREGAAMIRIQGDLLNSGNIVETVKNVRSLMGDIRILNNMDEDEVFAFAKKIAAPY 816
            +K    +K G A+M++GG I++V++ EQA+IAE AGA ++M             G+ RM     ++ +  AV++PVM++ R+GH  EA+ILE++G+D IDESEVL  AD +  I K  F  PFVCG RNLGEA+RRI EGAAMIR +G+   +GNIVE V++VR +  +IR++  M ++E++  A+K A PY
Sbjct:    9 EKGTERLKRGFAKMVKGGVIMDVTNAEQARIAEEAGAVAVMALHKVPADIRKAGGVARMAPVEKIQEIMDAVTIPVMAKCRIGHEAEARILEALGVDMIDESEVLTPADPFFHIYKKKFTAPFVCGARNLGEAVRRIWEGAAMIRTKGE-AGTGNIVEAVRHVRLVNENIRLIQRMTDEEIYGVAEKFAEPY 199          
BLAST of FC877876 vs. ExPASy Swiss-Prot
Match: PDXS_PYRHO (Pyridoxal biosynthesis lyase pdxS OS=Pyrococcus horikoshii GN=pdxS PE=3 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 1.057e-40
Identity = 87/192 (45.31%), Postives = 129/192 (67.19%), Query Frame = 1
Query:  259 KKNPFSIKAGLAQMLRGGAIVEVSSVEQAKIAEAAGACSIMVSEP------SRPGIKRMPDPSLVKSVKRAVSVPVMSRVRVGHFVEAQILESIGLDYIDESEVLGLADEYNFINKHNFRFPFVCGCRNLGEALRRIREGAAMIRIQGDLLNSGNIVETVKNVRSLMGDIRILNNMDEDEVFAFAKKIAAPY 816
            +K    +K G A+M++GG I++V++ EQA+IAE AGA ++M             G+ RM     ++ +  AV++PVM++ R+GH  EA+ILE++G+D IDESEVL  AD +  I K  F  PFVCG RNLGEA+RRI EGAAMIR +G+   +GNI+E V++VR +  +IR++  M ++E++  A+K A PY
Sbjct:    9 EKGTERLKRGFAKMVKGGVIMDVTNAEQARIAEEAGAVAVMALHKVPADIRKAGGVARMAPVEKIQEIMDAVTIPVMAKCRIGHEAEARILEALGVDMIDESEVLTPADPFFHIYKKKFTAPFVCGARNLGEAVRRIWEGAAMIRTKGE-AGTGNIIEAVRHVRLVNENIRLIQRMTDEEIYGVAEKFAEPY 199          
BLAST of FC877876 vs. ExPASy Swiss-Prot
Match: PDXS_SULTO (Pyridoxal biosynthesis lyase pdxS OS=Sulfolobus tokodaii GN=pdxS PE=3 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 1.803e-40
Identity = 85/183 (46.45%), Postives = 129/183 (70.49%), Query Frame = 1
Query:  304 RGGAIVEVSSVEQAKIAEAAGACSIMVSEP------SRPGIKRMPDPSLVKSVKRAVSVPVMSRVRVGHFVEAQILESIGLDYIDESEVLGLADEYNFINKHNFRFPFVCGCRNLGEALRRIREGAAMIRIQGDLLNSGNIVETVKNVRSLMGDIRILNNMDEDEVFAFAKKIAAPYDLVAQT 834
            +GG +++V++V QA+IAE AGA ++MV +          G+ RM DP +++ V  ++++PVM++VR+GH+ EA+ILE++G+D IDESEVL  ADE + INK  F+ PFV G RNLGEALRRI EGA+MIR +G+   +GN+ E VK+++ + G+IR L +M E++    A++   PY +V  T
Sbjct:   58 KGGVVMDVTNVTQAEIAEDAGATAVMVLDKLPYDVRKSGGVARMADPKIIEEVMNSITIPVMAKVRIGHYYEAKILEALGVDMIDESEVLTPADEEHHINKWEFKVPFVNGARNLGEALRRITEGASMIRTKGE-AGTGNVSEAVKHMKIINGEIRSLISMSEEDRMKKAREYQVPYQIVELT 239          
BLAST of FC877876 vs. ExPASy Swiss-Prot
Match: PDXS_METS5 (Pyridoxal biosynthesis lyase pdxS OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=pdxS PE=3 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 3.075e-40
Identity = 86/203 (42.36%), Postives = 135/203 (66.50%), Query Frame = 1
Query:  244 AITDAKKNPFSIKAGLAQMLRGGAIVEVSSVEQAKIAEAAGACSIMVSEP------SRPGIKRMPDPSLVKSVKRAVSVPVMSRVRVGHFVEAQILESIGLDYIDESEVLGLADEYNFINKHNFRFPFVCGCRNLGEALRRIREGAAMIRIQGDLLNSGNIVETVKNVRSLMGDIRILNNMDEDEVFAFAKKIAAPYDLVAQT 834
            ++T   +    +K       +GG +++V+SVEQA IAE AGA S+MV +          G+ RM DP +++ V  ++++PVM++VR+GH+ EA++LE++G+D IDESEVL  ADE + INK  F+ PFV G RNLGE LRRI EGA+MIR +G+   +GN+ E VK+++ +  ++R L +M E++    ++++  PY+LV  T
Sbjct:   39 SLTGQVQGTTRVKHAFPIFQKGGVVMDVTSVEQAGIAEEAGAVSVMVLDKLPYDVRKAGGVARMADPKIIEEVMNSITIPVMAKVRIGHYYEAKVLEALGVDMIDESEVLTPADEEHHINKWEFKIPFVNGARNLGEGLRRISEGASMIRTKGE-PGTGNVSEAVKHIKIVNQELRALLSMAEEDRVKKSRELQVPYELVELT 240          
BLAST of FC877876 vs. ExPASy Swiss-Prot
Match: PDXS_AERPE (Pyridoxal biosynthesis lyase pdxS OS=Aeropyrum pernix GN=pdxS PE=3 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 3.075e-40
Identity = 91/220 (41.36%), Postives = 138/220 (62.73%), Query Frame = 1
Query:  205 MAEDGAVTVYGGSAITDAKKNPFS----IKAGLAQMLRGGAIVEVSSVEQAKIAEAAGACSIMVSEP------SRPGIKRMPDPSLVKSVKRAVSVPVMSRVRVGHFVEAQILESIGLDYIDESEVLGLADEYNFINKHNFRFPFVCGCRNLGEALRRIREGAAMIRIQGDLLNSGNIVETVKNVRSLMGDIRILNNMDEDEVFAFAKKIAAPYDLVAQT 834
            + E+G    YG   + +A + P +    +K G     +GG +++V++VEQA IAE AGA ++MV +          G+ RM D  +++ V  ++++PVM++VR+GH+ EA ILESIG+D IDESEVL   DE + INK  F+ PFV G R+L EALRRI EGA+MIR +G+   +GN+ E V++++ +MGDI  L  +  +E    A++   P+ LV  T
Sbjct:   20 LREEGVWLAYGPEKLPEALEKPVNGTVAVKLGFPIYQKGGVVMDVTNVEQAGIAEDAGAVAVMVLDKLPYDVRKAGGVARMADVKVIEQVMSSITIPVMAKVRIGHYYEAMILESIGVDMIDESEVLTPVDEKHHINKWLFKVPFVNGARSLAEALRRIAEGASMIRTKGE-AGTGNVAEAVRHMKLIMGDIWRLRGLSAEERLRVAREYGVPHQLVDLT 238          
The following BLAST results are available for this feature:
BLAST of FC877876 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 208
Match NameE-valueIdentityDescription
PDXS_THEGJ5.605e-4245.83Pyridoxal biosynthesis lyase pdxS OS=Thermococcus ... [more]
PDXS_METMP7.320e-4247.24Pyridoxal biosynthesis lyase pdxS OS=Methanococcus... [more]
PDXS_METJA9.560e-4247.47Pyridoxal biosynthesis lyase pdxS OS=Methanocaldoc... [more]
PDXS_PYRKO1.249e-4148.39Pyridoxal biosynthesis lyase pdxS OS=Pyrococcus ko... [more]
PDXS_PYRFU2.130e-4145.83Pyridoxal biosynthesis lyase pdxS OS=Pyrococcus fu... [more]
PDXS_PYRAB8.093e-4145.83Pyridoxal biosynthesis lyase pdxS OS=Pyrococcus ab... [more]
PDXS_PYRHO1.057e-4045.31Pyridoxal biosynthesis lyase pdxS OS=Pyrococcus ho... [more]
PDXS_SULTO1.803e-4046.45Pyridoxal biosynthesis lyase pdxS OS=Sulfolobus to... [more]
PDXS_METS53.075e-4042.36Pyridoxal biosynthesis lyase pdxS OS=Metallosphaer... [more]
PDXS_AERPE3.075e-4041.36Pyridoxal biosynthesis lyase pdxS OS=Aeropyrum per... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA94CE03RM1 IVIA1 Citrus clementina cDNA clone IC0AAA94CE03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877876 ID=FC877876; Name=FC877876; organism=Citrus clementina; type=EST; length=841bp
TCGAAATTTCTACACTAATCAATCAATTCCCCACCGACTAACCCCACCTT
CGAAGCTCTTCAGAACCTTCTCGAACTCGCCCCAATCCTCACCCTCCCTT
CAATTTTATAAACCCTTTCTACAAAAAGAAACCCAGTACTCGATCAAACG
ATTCAATAACTACGCTTCTCGCATCAGTGAGACATTTTTACAAACGCCTT
TGCAATGGCCGAAGACGGAGCGGTCACAGTGTACGGTGGCAGCGCCATTA
CTGACGCCAAGAAGAACCCGTTTTCGATCAAAGCCGGCCTTGCCCAAATG
CTACGTGGCGGGGCCATTGTTGAAGTCTCCAGTGTGGAACAAGCCAAGAT
CGCCGAAGCAGCTGGCGCCTGTTCTATCATGGTATCCGAGCCCAGCCGGC
CCGGCATTAAGCGCATGCCGGATCCTTCTCTCGTTAAAAGCGTTAAACGC
GCCGTTTCAGTCCCCGTTATGTCACGTGTTCGTGTTGGGCATTTTGTTGA
AGCGCAGATTCTTGAAAGTATTGGGCTCGATTACATTGACGAGAGTGAGG
TTTTAGGATTAGCTGATGAATATAATTTTATTAACAAACATAACTTTAGG
TTCCCGTTTGTGTGTGGTTGTAGGAATCTTGGTGAAGCTTTGAGGAGAAT
TAGAGAAGGAGCTGCTATGATAAGAATACAAGGGGATTTGTTAAATTCTG
GTAATATTGTCGAGACTGTTAAAAATGTGAGGTCGTTAATGGGAGATATT
CGAATTTTGAATAACATGGATGAAGATGAGGTCTTCGCGTTTGCTAAGAA
GATAGCGGCTCCTTATGATTTGGTGGCTCAAACTAAACAAA
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