FC877876

Overview
NameFC877876
Unique NameFC877876
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length841
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11861 contig Ccv1_Contig11861:34..875. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC877876 vs. ExPASy Swiss-Prot
Match: PDXS_HELMI (Pyridoxal biosynthesis lyase pdxS OS=Heliobacterium modesticaldum (strain ATCC 51547 / Ice1) GN=pdxS PE=3 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 1.572e-52
Identity = 103/191 (53.93%), Postives = 146/191 (76.44%), Query Frame = 1
Query:  271 FSIKAGLAQMLRGGAIVEVSSVEQAKIAEAAGACSIMVSEP------SRPGIKRMPDPSLVKSVKRAVSVPVMSRVRVGHFVEAQILESIGLDYIDESEVLGLADEYNFINKHNFRFPFVCGCRNLGEALRRIREGAAMIRIQGDLLNSGNIVETVKNVRSLMGDIRILNNMDEDEVFAFAKKIAAPYDLV 825
            +++K GLA+ML+GG I++V++ EQAKIAE AGAC++M  E       +  G+ RM DP+++  +  AV++PVM++ R+GHFVEAQ+LES+G+DYIDESEVL  AD+   INK++F+ PFVCG RNLGEALRRI EGAAMIR +G+   +GN+VE V++ R +M +IR L  + ++E  +FAK+I APY+LV
Sbjct:    8 WTVKKGLAEMLKGGVIMDVTTPEQAKIAEEAGACAVMALERVPADIRAAGGVARMADPTVILRIMDAVTIPVMAKARIGHFVEAQVLESLGIDYIDESEVLTPADDLFHINKNDFKVPFVCGARNLGEALRRIGEGAAMIRTKGE-PGTGNVVEAVRHARQVMSEIRKLTTLPKEERMSFAKEIGAPYELV 197          
BLAST of FC877876 vs. ExPASy Swiss-Prot
Match: PDXS_DICTD (Pyridoxal biosynthesis lyase pdxS OS=Dictyoglomus turgidum (strain Z-1310 / DSM 6724) GN=pdxS PE=3 SV=1)

HSP 1 Score: 206.068 bits (523), Expect = 2.053e-52
Identity = 105/194 (54.12%), Postives = 146/194 (75.26%), Query Frame = 1
Query:  277 IKAGLAQMLRGGAIVEVSSVEQAKIAEAAGACSIMVSEP------SRPGIKRMPDPSLVKSVKRAVSVPVMSRVRVGHFVEAQILESIGLDYIDESEVLGLADEYNFINKHNFRFPFVCGCRNLGEALRRIREGAAMIRIQGDLLNSGNIVETVKNVRSLMGDIRILNNMDEDEVFAFAKKIAAPYDLVAQTKQ 840
            +K GLAQML+GG I++V++ EQA+IAE AGA ++M  E       +  G+ RM DP  +K +  AVS+PVM++VR+GHFVEAQILE++G+D+IDESEVL  ADE   INKH F+ PFVCG R+LGEALRRI EGAAMIR +G+   +GN+VE V+++R +M +IR L  + ++E+ A AK++ AP DL+ +TK+
Sbjct:   10 VKRGLAQMLKGGVIMDVTNAEQAEIAEEAGAVAVMALERVPADIRAEGGVARMADPKKIKEIMSAVSIPVMAKVRIGHFVEAQILEALGVDFIDESEVLTPADEKYHINKHAFKVPFVCGARDLGEALRRIAEGAAMIRTKGE-AGTGNVVEAVRHMRQIMDEIRSLVLLPDEELVAKAKELGAPLDLIIETKK 202          
BLAST of FC877876 vs. ExPASy Swiss-Prot
Match: PDXS_DICT6 (Pyridoxal biosynthesis lyase pdxS OS=Dictyoglomus thermophilum (strain ATCC 35947 / DSM 3960 / H-6-12) GN=pdxS PE=3 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 2.682e-52
Identity = 105/194 (54.12%), Postives = 147/194 (75.77%), Query Frame = 1
Query:  277 IKAGLAQMLRGGAIVEVSSVEQAKIAEAAGACSIMVSEP------SRPGIKRMPDPSLVKSVKRAVSVPVMSRVRVGHFVEAQILESIGLDYIDESEVLGLADEYNFINKHNFRFPFVCGCRNLGEALRRIREGAAMIRIQGDLLNSGNIVETVKNVRSLMGDIRILNNMDEDEVFAFAKKIAAPYDLVAQTKQ 840
            +K GLAQML+GG I++V++ EQA+IAE AGA ++M  E       ++ G+ RM DP  +K +  AVS+PVM++VR+GHFVEAQILE++G+D+IDESEVL  ADE   INKH F+ PFVCG R+LGEALRRI EGAAMIR +G+   +GN+VE V+++R +M +IR L  + ++E+ A AK++ AP +LV +TK+
Sbjct:   10 VKRGLAQMLKGGVIMDVTNAEQAEIAEEAGAVAVMALERVPADIRAQGGVARMADPKKIKEIMSAVSIPVMAKVRIGHFVEAQILEALGVDFIDESEVLTPADEKYHINKHLFKVPFVCGARDLGEALRRIAEGAAMIRTKGE-AGTGNVVEAVRHMRQIMDEIRALALLPDEELVAKAKELGAPLELVIETKK 202          
BLAST of FC877876 vs. ExPASy Swiss-Prot
Match: PDX1_EMENI (Pyridoxine biosynthesis protein pyroA OS=Emericella nidulans GN=pyroA PE=3 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 2.682e-52
Identity = 107/211 (50.71%), Postives = 152/211 (72.04%), Query Frame = 1
Query:  244 AITDAKKNPFSIKAGLAQMLRGGAIVEVSSVEQAKIAEAAGACSIMVSEP------SRPGIKRMPDPSLVKSVKRAVSVPVMSRVRVGHFVEAQILESIGLDYIDESEVLGLADEYNFINKHNFRFPFVCGCRNLGEALRRIREGAAMIRIQGDLLNSGNIVETVKNVRSLMGDI----RILNNM--DEDEVFAFAKKIAAPYDLVAQTKQ 840
            A T+   N F++KAGLAQML+GG I++V + EQA+IAE AGA ++M  E       ++ G+ RM DPS++K +  AV++PVM++ R+GHFVE QILE+IG+DYIDESEVL  AD    + KHNF+ PFVCGCRNLGEALRRI EGAAMIR +G+   +G++VE VK++R++  +I     IL +    E E+ A+A+++ APY+L+ +  +
Sbjct:    2 AATNGASNDFTVKAGLAQMLKGGVIMDVVNAEQARIAEEAGAAAVMALERVPADIRAQGGVARMSDPSMIKEIMEAVTIPVMAKARIGHFVECQILEAIGVDYIDESEVLTPADNLYHVTKHNFKAPFVCGCRNLGEALRRISEGAAMIRTKGE-AGTGDVVEAVKHMRTVNAEIARARAILQSSPDPEPELRAYARELEAPYELLREAAE 211          
BLAST of FC877876 vs. ExPASy Swiss-Prot
Match: PDXS_THET8 (Pyridoxal biosynthesis lyase pdxS OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=pdxS PE=1 SV=2)

HSP 1 Score: 204.527 bits (519), Expect = 5.974e-52
Identity = 103/195 (52.82%), Postives = 145/195 (74.36%), Query Frame = 1
Query:  259 KKNPFSIKAGLAQMLRGGAIVEVSSVEQAKIAEAAGACSIMVSEP------SRPGIKRMPDPSLVKSVKRAVSVPVMSRVRVGHFVEAQILESIGLDYIDESEVLGLADEYNFINKHNFRFPFVCGCRNLGEALRRIREGAAMIRIQGDLLNSGNIVETVKNVRSLMGDIRILNNMDEDEVFAFAKKIAAPYDLV 825
            +K  F IK G A+M +GG I++V++ EQA IAE AGA ++M  E       ++ G+ RM DP ++K +  AVS+PVM++VR+GHFVEA ILE+IG+D+IDESEVL  ADE + I+K  F+ PFVCG RNLGEALRRI EGAAMIR +G+   +GN+VE V++ R++  +IR + ++ EDE+ A+AK+I AP++LV
Sbjct:    2 EKGTFQIKTGFAEMFKGGVIMDVTTPEQAVIAEEAGAVAVMALERVPADIRAQGGVARMSDPKIIKEIMAAVSIPVMAKVRIGHFVEAMILEAIGVDFIDESEVLTPADEEHHIDKWKFKVPFVCGARNLGEALRRIAEGAAMIRTKGE-AGTGNVVEAVRHARTMWKEIRYVQSLREDELMAYAKEIGAPFELV 195          
BLAST of FC877876 vs. ExPASy Swiss-Prot
Match: PDXS_THET2 (Pyridoxal biosynthesis lyase pdxS OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=pdxS PE=3 SV=1)

HSP 1 Score: 204.142 bits (518), Expect = 7.803e-52
Identity = 103/195 (52.82%), Postives = 145/195 (74.36%), Query Frame = 1
Query:  259 KKNPFSIKAGLAQMLRGGAIVEVSSVEQAKIAEAAGACSIMVSEP------SRPGIKRMPDPSLVKSVKRAVSVPVMSRVRVGHFVEAQILESIGLDYIDESEVLGLADEYNFINKHNFRFPFVCGCRNLGEALRRIREGAAMIRIQGDLLNSGNIVETVKNVRSLMGDIRILNNMDEDEVFAFAKKIAAPYDLV 825
            +K  F IK G A+M +GG I++V++ EQA IAE AGA ++M  E       ++ G+ RM DP ++K +  AVS+PVM++VR+GHFVEA ILE+IG+D+IDESEVL  ADE + I+K  F+ PFVCG RNLGEALRRI EGAAMIR +G+   +GN+VE V++ R++  +IR + ++ EDE+ A+AK+I AP++LV
Sbjct:    2 EKGTFHIKTGFAEMFKGGVIMDVTTPEQAVIAEEAGAVAVMALERVPADIRAQGGVARMSDPKIIKEIMAAVSIPVMAKVRIGHFVEAMILEAIGVDFIDESEVLTPADEEHHIDKWKFKVPFVCGARNLGEALRRIAEGAAMIRTKGE-AGTGNVVEAVRHARTMWKEIRYVQSLREDELMAYAKEIGAPFELV 195          
BLAST of FC877876 vs. ExPASy Swiss-Prot
Match: PDXS_FRATW (Pyridoxal biosynthesis lyase pdxS OS=Francisella tularensis subsp. tularensis (strain WY96-3418) GN=pdxS PE=3 SV=1)

HSP 1 Score: 204.142 bits (518), Expect = 7.803e-52
Identity = 105/190 (55.26%), Postives = 138/190 (72.63%), Query Frame = 1
Query:  274 SIKAGLAQMLRGGAIVEVSSVEQAKIAEAAGACSIMVSEP------SRPGIKRMPDPSLVKSVKRAVSVPVMSRVRVGHFVEAQILESIGLDYIDESEVLGLADEYNFINKHNFRFPFVCGCRNLGEALRRIREGAAMIRIQGDLLNSGNIVETVKNVRSLMGDIRILNNMDEDEVFAFAKKIAAPYDLV 825
            +IK GLA+ML+GG I++V + EQA+IA+ AGA ++M  E          GI RM DP L+K +   VS+PVM++ R+GHFVEAQILES+G+D+IDESEVL  ADE N I+K +F+ PFVCGC NLGEALRRI EGAA+IR +G+   +GNIVE V+ +R +  DI  + N D+ E+ A AK + APYDLV
Sbjct:    5 NIKIGLAEMLKGGVIMDVVNAEQAEIAQQAGAVAVMALERVPADIRKDGGIARMSDPKLIKEIMSVVSIPVMAKARIGHFVEAQILESLGVDFIDESEVLTPADELNHIDKDSFKVPFVCGCTNLGEALRRIGEGAALIRTKGE-AGTGNIVEAVRQLRQVNKDINYIKNADKSELMAIAKNLQAPYDLV 193          
BLAST of FC877876 vs. ExPASy Swiss-Prot
Match: PDXS_FRATU (Pyridoxal biosynthesis lyase pdxS (Fragment) OS=Francisella tularensis GN=pdxS PE=3 SV=1)

HSP 1 Score: 204.142 bits (518), Expect = 7.803e-52
Identity = 105/190 (55.26%), Postives = 138/190 (72.63%), Query Frame = 1
Query:  274 SIKAGLAQMLRGGAIVEVSSVEQAKIAEAAGACSIMVSEP------SRPGIKRMPDPSLVKSVKRAVSVPVMSRVRVGHFVEAQILESIGLDYIDESEVLGLADEYNFINKHNFRFPFVCGCRNLGEALRRIREGAAMIRIQGDLLNSGNIVETVKNVRSLMGDIRILNNMDEDEVFAFAKKIAAPYDLV 825
            +IK GLA+ML+GG I++V + EQA+IA+ AGA ++M  E          GI RM DP L+K +   VS+PVM++ R+GHFVEAQILES+G+D+IDESEVL  ADE N I+K +F+ PFVCGC NLGEALRRI EGAA+IR +G+   +GNIVE V+ +R +  DI  + N D+ E+ A AK + APYDLV
Sbjct:    5 NIKIGLAEMLKGGVIMDVVNAEQAEIAQQAGAVAVMALERVPADIRKDGGIARMSDPKLIKEIMSVVSIPVMAKARIGHFVEAQILESLGVDFIDESEVLTPADELNHIDKDSFKVPFVCGCTNLGEALRRIGEGAALIRTKGE-AGTGNIVEAVRQLRQVNKDINYIKNADKSELMAIAKNLQAPYDLV 193          
BLAST of FC877876 vs. ExPASy Swiss-Prot
Match: PDXS_FRATT (Pyridoxal biosynthesis lyase pdxS OS=Francisella tularensis subsp. tularensis GN=pdxS PE=3 SV=1)

HSP 1 Score: 204.142 bits (518), Expect = 7.803e-52
Identity = 105/190 (55.26%), Postives = 138/190 (72.63%), Query Frame = 1
Query:  274 SIKAGLAQMLRGGAIVEVSSVEQAKIAEAAGACSIMVSEP------SRPGIKRMPDPSLVKSVKRAVSVPVMSRVRVGHFVEAQILESIGLDYIDESEVLGLADEYNFINKHNFRFPFVCGCRNLGEALRRIREGAAMIRIQGDLLNSGNIVETVKNVRSLMGDIRILNNMDEDEVFAFAKKIAAPYDLV 825
            +IK GLA+ML+GG I++V + EQA+IA+ AGA ++M  E          GI RM DP L+K +   VS+PVM++ R+GHFVEAQILES+G+D+IDESEVL  ADE N I+K +F+ PFVCGC NLGEALRRI EGAA+IR +G+   +GNIVE V+ +R +  DI  + N D+ E+ A AK + APYDLV
Sbjct:    5 NIKIGLAEMLKGGVIMDVVNAEQAEIAQQAGAVAVMALERVPADIRKDGGIARMSDPKLIKEIMSVVSIPVMAKARIGHFVEAQILESLGVDFIDESEVLTPADELNHIDKDSFKVPFVCGCTNLGEALRRIGEGAALIRTKGE-AGTGNIVEAVRQLRQVNKDINYIKNADKSELMAIAKNLQAPYDLV 193          
BLAST of FC877876 vs. ExPASy Swiss-Prot
Match: PDXS_FRATO (Pyridoxal biosynthesis lyase pdxS OS=Francisella tularensis subsp. holarctica (strain OSU18) GN=pdxS PE=3 SV=1)

HSP 1 Score: 204.142 bits (518), Expect = 7.803e-52
Identity = 105/190 (55.26%), Postives = 138/190 (72.63%), Query Frame = 1
Query:  274 SIKAGLAQMLRGGAIVEVSSVEQAKIAEAAGACSIMVSEP------SRPGIKRMPDPSLVKSVKRAVSVPVMSRVRVGHFVEAQILESIGLDYIDESEVLGLADEYNFINKHNFRFPFVCGCRNLGEALRRIREGAAMIRIQGDLLNSGNIVETVKNVRSLMGDIRILNNMDEDEVFAFAKKIAAPYDLV 825
            +IK GLA+ML+GG I++V + EQA+IA+ AGA ++M  E          GI RM DP L+K +   VS+PVM++ R+GHFVEAQILES+G+D+IDESEVL  ADE N I+K +F+ PFVCGC NLGEALRRI EGAA+IR +G+   +GNIVE V+ +R +  DI  + N D+ E+ A AK + APYDLV
Sbjct:    5 NIKIGLAEMLKGGVIMDVVNAEQAEIAQQAGAVAVMALERVPADIRKDGGIARMSDPKLIKEIMSVVSIPVMAKARIGHFVEAQILESLGVDFIDESEVLTPADELNHIDKDSFKVPFVCGCTNLGEALRRIGEGAALIRTKGE-AGTGNIVEAVRQLRQVNKDINYIKNADKSELMAIAKNLQAPYDLV 193          
The following BLAST results are available for this feature:
BLAST of FC877876 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 208
Match NameE-valueIdentityDescription
PDXS_HELMI1.572e-5253.93Pyridoxal biosynthesis lyase pdxS OS=Heliobacteriu... [more]
PDXS_DICTD2.053e-5254.12Pyridoxal biosynthesis lyase pdxS OS=Dictyoglomus ... [more]
PDXS_DICT62.682e-5254.12Pyridoxal biosynthesis lyase pdxS OS=Dictyoglomus ... [more]
PDX1_EMENI2.682e-5250.71Pyridoxine biosynthesis protein pyroA OS=Emericell... [more]
PDXS_THET85.974e-5252.82Pyridoxal biosynthesis lyase pdxS OS=Thermus therm... [more]
PDXS_THET27.803e-5252.82Pyridoxal biosynthesis lyase pdxS OS=Thermus therm... [more]
PDXS_FRATW7.803e-5255.26Pyridoxal biosynthesis lyase pdxS OS=Francisella t... [more]
PDXS_FRATU7.803e-5255.26Pyridoxal biosynthesis lyase pdxS (Fragment) OS=Fr... [more]
PDXS_FRATT7.803e-5255.26Pyridoxal biosynthesis lyase pdxS OS=Francisella t... [more]
PDXS_FRATO7.803e-5255.26Pyridoxal biosynthesis lyase pdxS OS=Francisella t... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA94CE03RM1 IVIA1 Citrus clementina cDNA clone IC0AAA94CE03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877876 ID=FC877876; Name=FC877876; organism=Citrus clementina; type=EST; length=841bp
TCGAAATTTCTACACTAATCAATCAATTCCCCACCGACTAACCCCACCTT
CGAAGCTCTTCAGAACCTTCTCGAACTCGCCCCAATCCTCACCCTCCCTT
CAATTTTATAAACCCTTTCTACAAAAAGAAACCCAGTACTCGATCAAACG
ATTCAATAACTACGCTTCTCGCATCAGTGAGACATTTTTACAAACGCCTT
TGCAATGGCCGAAGACGGAGCGGTCACAGTGTACGGTGGCAGCGCCATTA
CTGACGCCAAGAAGAACCCGTTTTCGATCAAAGCCGGCCTTGCCCAAATG
CTACGTGGCGGGGCCATTGTTGAAGTCTCCAGTGTGGAACAAGCCAAGAT
CGCCGAAGCAGCTGGCGCCTGTTCTATCATGGTATCCGAGCCCAGCCGGC
CCGGCATTAAGCGCATGCCGGATCCTTCTCTCGTTAAAAGCGTTAAACGC
GCCGTTTCAGTCCCCGTTATGTCACGTGTTCGTGTTGGGCATTTTGTTGA
AGCGCAGATTCTTGAAAGTATTGGGCTCGATTACATTGACGAGAGTGAGG
TTTTAGGATTAGCTGATGAATATAATTTTATTAACAAACATAACTTTAGG
TTCCCGTTTGTGTGTGGTTGTAGGAATCTTGGTGAAGCTTTGAGGAGAAT
TAGAGAAGGAGCTGCTATGATAAGAATACAAGGGGATTTGTTAAATTCTG
GTAATATTGTCGAGACTGTTAAAAATGTGAGGTCGTTAATGGGAGATATT
CGAATTTTGAATAACATGGATGAAGATGAGGTCTTCGCGTTTGCTAAGAA
GATAGCGGCTCCTTATGATTTGGTGGCTCAAACTAAACAAA
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