FC877876

Overview
NameFC877876
Unique NameFC877876
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length841
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11861 contig Ccv1_Contig11861:34..875. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC877876 vs. ExPASy Swiss-Prot
Match: PDXS_THEVO (Pyridoxal biosynthesis lyase pdxS OS=Thermoplasma volcanium GN=pdxS PE=3 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 4.157e-37
Identity = 82/186 (44.09%), Postives = 121/186 (65.05%), Query Frame = 1
Query:  277 IKAGLAQMLRGGAIVEVSSVEQAKIAEAAGACSIMVSEP------SRPGIKRMPDPSLVKSVKRAVSVPVMSRVRVGHFVEAQILESIGLDYIDESEVLGLADEYNFINKHNFRFPFVCGCRNLGEALRRIREGAAMIRIQGDLLNSGNIVETVKNVRSLMGDIRILNNMDEDEVFAFAKKIAAPY 816
            IK G + M +GG I++V++ EQAKIAE AGA ++M  E       +  G+ RM DP  ++ +  AV++PVM++VR+GH  EA  LE +G+D +DESEVL  AD +  + K     P V G RNL EA+RRI EGAAM+R +G+   +GNI+E V+++R +  +I I+  M +DE+   A+ IA+ Y
Sbjct:   15 IKRGFSSMTKGGVIMDVTTAEQAKIAEKAGAVAVMALERVPADIRAAGGVARMADPKKIREILDAVTIPVMAKVRIGHISEAYTLEKLGVDMLDESEVLTPADPFFHLYKKKLTVPVVSGARNLPEAVRRIFEGAAMVRTKGE-AGTGNIIEAVRHIRKVNEEIAIVRRMTQDEIKTAAENIASSY 199          
BLAST of FC877876 vs. ExPASy Swiss-Prot
Match: PDXS_PYRAR (Pyridoxal biosynthesis lyase pdxS OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=pdxS PE=3 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 4.157e-37
Identity = 87/192 (45.31%), Postives = 125/192 (65.10%), Query Frame = 1
Query:  277 IKAGLAQMLRGGAIVEVSSVEQAKIAEAAGACSIMVSEP------SRPGIKRMPDPSLVKSVKRAVSVPVMSRVRVGHFVEAQILESIGLDYIDESEVLGLADEYNFINKHNFRFPFVCGCRNLGEALRRIREGAAMIRIQGDLLNSGNIVETVKNVRSLMGDIRILNNMDEDEVFAFAKKIAAPYDLVAQT 834
            +KAG   MLR G I++V++VEQA+IAE AGA  +MV +          G+ RM D  +++ V   V++PV ++VR+GH+ EA +L+ IG+D IDESEVL   D+ + INK  F  PFV GCR L EALRRI EGA+MIR +G+   +GN+ E VK+ ++L   I  L   +E+ +  +A++  AP +LVA T
Sbjct:   50 VKAGFPAMLRNGVIMDVTNVEQAQIAEEAGAVGVMVLDKLPYDVRKAGGVARMADLKVIEEVMSHVTIPVSAKVRIGHYYEAFLLQEIGVDLIDESEVLTPVDDQHHINKWLFTVPFVNGCRELCEALRRISEGASMIRSKGE-AGTGNVSEAVKHFKALYRAINELAAAEEERLRDYARQCQAPLELVALT 240          
BLAST of FC877876 vs. ExPASy Swiss-Prot
Match: PDX1_STELP (Probable pyridoxal biosynthesis protein PDX1 (Fragment) OS=Stellaria longipes PE=2 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 5.429e-37
Identity = 82/142 (57.75%), Postives = 107/142 (75.35%), Query Frame = 1
Query:  430 LVKSVKRAVSVPVMSRVRVGHFVEAQILESIGLDYIDESEVLGLADEYNFINKHNFRFPFVCGCR-NLGEALRRIREGAA----MIRIQGDLLNSGNIVETVKNVRSLMGDIRILNNMDEDEVFAFAKKIAAPYDLVAQTKQ 840
            L+K +K AV++PVM++ R+GHFVEAQILESIG+DY+DESEVL  ADE + INKHNF+ PFVCG     G      R G A      R++    ++GN+VE V+++RS+MG+IR+L NMD+DEVFA+AKKI+A YDLV QTKQ
Sbjct:    1 LIKEIKAAVTIPVMAKARIGHFVEAQILESIGVDYVDESEVLTPADEDHHINKHNFQIPFVCGLSIPRGAPPPAYRRGYAGHDTGPRVRKP--STGNVVEAVRHIRSVMGEIRLLRNMDDDEVFAYAKKISAAYDLVMQTKQ 140          
BLAST of FC877876 vs. ExPASy Swiss-Prot
Match: PDXS_PYRCJ (Pyridoxal biosynthesis lyase pdxS OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=pdxS PE=3 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.579e-36
Identity = 85/194 (43.81%), Postives = 125/194 (64.43%), Query Frame = 1
Query:  277 IKAGLAQMLRGGAIVEVSSVEQAKIAEAAGACSIMVSEP------SRPGIKRMPDPSLVKSVKRAVSVPVMSRVRVGHFVEAQILESIGLDYIDESEVLGLADEYNFINKHNFRFPFVCGCRNLGEALRRIREGAAMIRIQGDLLNSGNIVETVKNVRSLMGDIRILNNMDEDEVFA--FAKKIAAPYDLVAQT 834
            +K G   MLR G I++V++VEQA++AE AGA  +MV +          G+ RM D  +++ V  A+++PV ++VR+GHF EA +LE IG+D IDESEVL   DE + INK  F+ PFV G R L EALRRI EGA+MIR +G+   +GN+ E VK+ +++ G +R L    +DE +   +A++   P ++V  T
Sbjct:   47 VKLGFIAMLRRGVIMDVTNVEQAQVAEEAGAVGVMVLDKLPYDVRKAGGVARMADLKIIEEVMDAITIPVSAKVRIGHFYEAVLLEQIGVDLIDESEVLTPVDEQHHINKWLFKTPFVNGARELCEALRRISEGASMIRSKGE-AGTGNVAEAVKHFKAIYGAVRDLTAHRDDEEYLRDYARRCQVPLEVVKLT 239          
BLAST of FC877876 vs. ExPASy Swiss-Prot
Match: PDXS_DESK1 (Pyridoxal biosynthesis lyase pdxS OS=Desulfurococcus kamchatkensis (strain 1221n / DSM 18924) GN=pdxS PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.478e-34
Identity = 82/196 (41.84%), Postives = 124/196 (63.27%), Query Frame = 1
Query:  277 IKAGLAQMLRGGAIVEVSSVEQAKIAEAAGACSIMVSEP------SRPGIKRMPDPSLVKSVKRAVSVPVMSRVRVGHFVEAQILESIGLDYIDESEVLGLADEYNFINKHNFRFPFVCGCRNLGEALRRIREGAAMIRIQGDLLNSGNIVETVKNVRSLMGDIRILN----NMDEDEVFAFAKKIAAPYDLVAQT 834
            +K G   ML+GG I++V++ EQA IAE AGA  +MV +          G+ R  D  +++ V  ++++PV ++ R+GH  EA++LE +G+D IDESEVL   DE   INK  F+ PFV G R+L EALRRI EGA+MIR +G+   +GN+ E VK+++ +  DI +LN    N D + ++ ++K+   PY+L   T
Sbjct:   44 VKYGFVSMLKGGVIMDVTNPEQAIIAEEAGAVGVMVLDKLPYDVRMAGGVARTADVKVIEEVMSSITIPVSAKCRIGHEFEARVLEEVGVDLIDESEVLTPVDEKAHINKWLFKTPFVNGARSLPEALRRIYEGASMIRTKGE-PGTGNVAEAVKHIKIVNRDIYMLNGYYRNGDVEAIWVYSKENRVPYELALLT 238          
BLAST of FC877876 vs. ExPASy Swiss-Prot
Match: PDXS_HYPBU (Pyridoxal biosynthesis lyase pdxS OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=pdxS PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.807e-32
Identity = 77/196 (39.29%), Postives = 123/196 (62.76%), Query Frame = 1
Query:  277 IKAGLAQMLRGGAIVEVSSVEQAKIAEAAGACSIMVSEP------SRPGIKRMPDPSLVKSVKRAVSVPVMSRVRVGHFVEAQILESIGLDYIDESEVLGLADEYNFINKHNFRFPFVCGCRNLGEALRRIREGAAMIRIQGDLLNSGNIVETVKNVRSLMGDIRILNNM----DEDEVFAFAKKIAAPYDLVAQT 834
            ++ G   ML+GG +++V++ +QA+IAE AGA  +MV +          G+ R  D +++++V   +++PV ++ R+GH+ EA++LE IG+D IDESEVL   DE   I K  FR PFV G R+L EALRRI EGA+MIR +G+   +GN+ E V++++++  DI +L       D + +  +AK    P++L   T
Sbjct:   44 VRYGFISMLKGGVVMDVTNEQQAEIAEDAGAVGVMVLDKLPYDVRKAGGVARTADLNVIRAVMETITIPVSAKCRIGHYWEAKLLEEIGVDLIDESEVLTPTDEKAHIWKWEFRVPFVNGARSLPEALRRIWEGASMIRTKGE-AGTGNVAEAVRHMKAVNRDIAVLRGYYKAGDIEAIRLYAKSNNVPFELALLT 238          
BLAST of FC877876 vs. ExPASy Swiss-Prot
Match: PDXS_METVA (Pyridoxal biosynthesis lyase pdxS (Fragment) OS=Methanococcus vannielii GN=pdxS PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.530e-31
Identity = 68/106 (64.15%), Postives = 85/106 (80.19%), Query Frame = 1
Query:  421 DPSLVKSVKRAVSVPVMSRVRVGHFVEAQILESIGLDYIDESEVLGLADEYNFINKHNFRFPFVCGCRNLGEALRRIREGAAMIRIQGDLLNSGNIVETVKNVRSL 738
            DP ++  +K AVS+PVM++ R+GHFVEAQ+LESIG+D IDESEVL  ADE N INK  F  PFVCG RNLGEALRRI EGAAMIR +G+   +GN+VE VK++R++
Sbjct:    1 DPDMIFEIKDAVSIPVMAKARIGHFVEAQVLESIGVDMIDESEVLTPADEINHINKKAFTAPFVCGARNLGEALRRIDEGAAMIRTKGE-AGTGNVVEAVKHMRAV 105          
BLAST of FC877876 vs. ExPASy Swiss-Prot
Match: PDXL4_ARATH (Probable PDX1-like protein 4 OS=Arabidopsis thaliana GN=PDX1L4 PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.205e-13
Identity = 38/63 (60.32%), Postives = 48/63 (76.19%), Query Frame = 1
Query:  205 MAEDGAVTVYGGSAITDAK-KNPFSIKAGLAQMLRGGAIVEVSSVEQAKIAEAAGACSIMVSE 390
            MA  G V VYG  A+T+ K K+PFS+K GLAQMLRGG I++V + EQA+IAE AGAC++M  E
Sbjct:    1 MAGTGVVAVYGEGAMTETKQKSPFSVKVGLAQMLRGGVIMDVVNAEQARIAEEAGACAVMALE 63          
The following BLAST results are available for this feature:
BLAST of FC877876 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 208
Match NameE-valueIdentityDescription
PDXS_THEVO4.157e-3744.09Pyridoxal biosynthesis lyase pdxS OS=Thermoplasma ... [more]
PDXS_PYRAR4.157e-3745.31Pyridoxal biosynthesis lyase pdxS OS=Pyrobaculum a... [more]
PDX1_STELP5.429e-3757.75Probable pyridoxal biosynthesis protein PDX1 (Frag... [more]
PDXS_PYRCJ1.579e-3643.81Pyridoxal biosynthesis lyase pdxS OS=Pyrobaculum c... [more]
PDXS_DESK11.478e-3441.84Pyridoxal biosynthesis lyase pdxS OS=Desulfurococc... [more]
PDXS_HYPBU1.807e-3239.29Pyridoxal biosynthesis lyase pdxS OS=Hyperthermus ... [more]
PDXS_METVA1.530e-3164.15Pyridoxal biosynthesis lyase pdxS (Fragment) OS=Me... [more]
PDXL4_ARATH3.205e-1360.32Probable PDX1-like protein 4 OS=Arabidopsis thalia... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA94CE03RM1 IVIA1 Citrus clementina cDNA clone IC0AAA94CE03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877876 ID=FC877876; Name=FC877876; organism=Citrus clementina; type=EST; length=841bp
TCGAAATTTCTACACTAATCAATCAATTCCCCACCGACTAACCCCACCTT
CGAAGCTCTTCAGAACCTTCTCGAACTCGCCCCAATCCTCACCCTCCCTT
CAATTTTATAAACCCTTTCTACAAAAAGAAACCCAGTACTCGATCAAACG
ATTCAATAACTACGCTTCTCGCATCAGTGAGACATTTTTACAAACGCCTT
TGCAATGGCCGAAGACGGAGCGGTCACAGTGTACGGTGGCAGCGCCATTA
CTGACGCCAAGAAGAACCCGTTTTCGATCAAAGCCGGCCTTGCCCAAATG
CTACGTGGCGGGGCCATTGTTGAAGTCTCCAGTGTGGAACAAGCCAAGAT
CGCCGAAGCAGCTGGCGCCTGTTCTATCATGGTATCCGAGCCCAGCCGGC
CCGGCATTAAGCGCATGCCGGATCCTTCTCTCGTTAAAAGCGTTAAACGC
GCCGTTTCAGTCCCCGTTATGTCACGTGTTCGTGTTGGGCATTTTGTTGA
AGCGCAGATTCTTGAAAGTATTGGGCTCGATTACATTGACGAGAGTGAGG
TTTTAGGATTAGCTGATGAATATAATTTTATTAACAAACATAACTTTAGG
TTCCCGTTTGTGTGTGGTTGTAGGAATCTTGGTGAAGCTTTGAGGAGAAT
TAGAGAAGGAGCTGCTATGATAAGAATACAAGGGGATTTGTTAAATTCTG
GTAATATTGTCGAGACTGTTAAAAATGTGAGGTCGTTAATGGGAGATATT
CGAATTTTGAATAACATGGATGAAGATGAGGTCTTCGCGTTTGCTAAGAA
GATAGCGGCTCCTTATGATTTGGTGGCTCAAACTAAACAAA
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