FC877876

Overview
NameFC877876
Unique NameFC877876
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length841
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11861 contig Ccv1_Contig11861:34..875. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC877876 vs. ExPASy Swiss-Prot
Match: PDXS_FRATN (Pyridoxal biosynthesis lyase pdxS OS=Francisella tularensis subsp. novicida (strain U112) GN=pdxS PE=3 SV=1)

HSP 1 Score: 204.142 bits (518), Expect = 7.803e-52
Identity = 105/190 (55.26%), Postives = 138/190 (72.63%), Query Frame = 1
Query:  274 SIKAGLAQMLRGGAIVEVSSVEQAKIAEAAGACSIMVSEP------SRPGIKRMPDPSLVKSVKRAVSVPVMSRVRVGHFVEAQILESIGLDYIDESEVLGLADEYNFINKHNFRFPFVCGCRNLGEALRRIREGAAMIRIQGDLLNSGNIVETVKNVRSLMGDIRILNNMDEDEVFAFAKKIAAPYDLV 825
            +IK GLA+ML+GG I++V + EQA+IA+ AGA ++M  E          GI RM DP L+K +   VS+PVM++ R+GHFVEAQILES+G+D+IDESEVL  ADE N I+K +F+ PFVCGC NLGEALRRI EGAA+IR +G+   +GNIVE V+ +R +  DI  + N D+ E+ A AK + APYDLV
Sbjct:    5 NIKIGLAEMLKGGVIMDVVNAEQAEIAQQAGAVAVMALERVPADIRKDGGIARMSDPKLIKEIMSVVSIPVMAKARIGHFVEAQILESLGVDFIDESEVLTPADELNHIDKDSFKVPFVCGCTNLGEALRRIGEGAALIRTKGE-AGTGNIVEAVRQLRQVNKDINYIKNADKSELMAIAKNLQAPYDLV 193          
BLAST of FC877876 vs. ExPASy Swiss-Prot
Match: PDXS_FRATM (Pyridoxal biosynthesis lyase pdxS OS=Francisella tularensis subsp. mediasiatica (strain FSC147) GN=pdxS PE=3 SV=1)

HSP 1 Score: 204.142 bits (518), Expect = 7.803e-52
Identity = 105/190 (55.26%), Postives = 138/190 (72.63%), Query Frame = 1
Query:  274 SIKAGLAQMLRGGAIVEVSSVEQAKIAEAAGACSIMVSEP------SRPGIKRMPDPSLVKSVKRAVSVPVMSRVRVGHFVEAQILESIGLDYIDESEVLGLADEYNFINKHNFRFPFVCGCRNLGEALRRIREGAAMIRIQGDLLNSGNIVETVKNVRSLMGDIRILNNMDEDEVFAFAKKIAAPYDLV 825
            +IK GLA+ML+GG I++V + EQA+IA+ AGA ++M  E          GI RM DP L+K +   VS+PVM++ R+GHFVEAQILES+G+D+IDESEVL  ADE N I+K +F+ PFVCGC NLGEALRRI EGAA+IR +G+   +GNIVE V+ +R +  DI  + N D+ E+ A AK + APYDLV
Sbjct:    5 NIKIGLAEMLKGGVIMDVVNAEQAEIAQQAGAVAVMALERVPADIRKDGGIARMSDPKLIKEIMSVVSIPVMAKARIGHFVEAQILESLGVDFIDESEVLTPADELNHIDKDSFKVPFVCGCTNLGEALRRIGEGAALIRTKGE-AGTGNIVEAVRQLRQVNKDINYIKNADKSELMAIAKNLQAPYDLV 193          
BLAST of FC877876 vs. ExPASy Swiss-Prot
Match: PDXS_FRATH (Pyridoxal biosynthesis lyase pdxS OS=Francisella tularensis subsp. holarctica (strain LVS) GN=pdxS PE=3 SV=1)

HSP 1 Score: 204.142 bits (518), Expect = 7.803e-52
Identity = 105/190 (55.26%), Postives = 138/190 (72.63%), Query Frame = 1
Query:  274 SIKAGLAQMLRGGAIVEVSSVEQAKIAEAAGACSIMVSEP------SRPGIKRMPDPSLVKSVKRAVSVPVMSRVRVGHFVEAQILESIGLDYIDESEVLGLADEYNFINKHNFRFPFVCGCRNLGEALRRIREGAAMIRIQGDLLNSGNIVETVKNVRSLMGDIRILNNMDEDEVFAFAKKIAAPYDLV 825
            +IK GLA+ML+GG I++V + EQA+IA+ AGA ++M  E          GI RM DP L+K +   VS+PVM++ R+GHFVEAQILES+G+D+IDESEVL  ADE N I+K +F+ PFVCGC NLGEALRRI EGAA+IR +G+   +GNIVE V+ +R +  DI  + N D+ E+ A AK + APYDLV
Sbjct:    5 NIKIGLAEMLKGGVIMDVVNAEQAEIAQQAGAVAVMALERVPADIRKDGGIARMSDPKLIKEIMSVVSIPVMAKARIGHFVEAQILESLGVDFIDESEVLTPADELNHIDKDSFKVPFVCGCTNLGEALRRIGEGAALIRTKGE-AGTGNIVEAVRQLRQVNKDINYIKNADKSELMAIAKNLQAPYDLV 193          
BLAST of FC877876 vs. ExPASy Swiss-Prot
Match: PDXS_FRATF (Pyridoxal biosynthesis lyase pdxS OS=Francisella tularensis subsp. holarctica (strain FTNF002-00 / FTA) GN=pdxS PE=3 SV=1)

HSP 1 Score: 204.142 bits (518), Expect = 7.803e-52
Identity = 105/190 (55.26%), Postives = 138/190 (72.63%), Query Frame = 1
Query:  274 SIKAGLAQMLRGGAIVEVSSVEQAKIAEAAGACSIMVSEP------SRPGIKRMPDPSLVKSVKRAVSVPVMSRVRVGHFVEAQILESIGLDYIDESEVLGLADEYNFINKHNFRFPFVCGCRNLGEALRRIREGAAMIRIQGDLLNSGNIVETVKNVRSLMGDIRILNNMDEDEVFAFAKKIAAPYDLV 825
            +IK GLA+ML+GG I++V + EQA+IA+ AGA ++M  E          GI RM DP L+K +   VS+PVM++ R+GHFVEAQILES+G+D+IDESEVL  ADE N I+K +F+ PFVCGC NLGEALRRI EGAA+IR +G+   +GNIVE V+ +R +  DI  + N D+ E+ A AK + APYDLV
Sbjct:    5 NIKIGLAEMLKGGVIMDVVNAEQAEIAQQAGAVAVMALERVPADIRKDGGIARMSDPKLIKEIMSVVSIPVMAKARIGHFVEAQILESLGVDFIDESEVLTPADELNHIDKDSFKVPFVCGCTNLGEALRRIGEGAALIRTKGE-AGTGNIVEAVRQLRQVNKDINYIKNADKSELMAIAKNLQAPYDLV 193          
BLAST of FC877876 vs. ExPASy Swiss-Prot
Match: PDXS_FRAT1 (Pyridoxal biosynthesis lyase pdxS OS=Francisella tularensis subsp. tularensis (strain FSC 198) GN=pdxS PE=3 SV=1)

HSP 1 Score: 204.142 bits (518), Expect = 7.803e-52
Identity = 105/190 (55.26%), Postives = 138/190 (72.63%), Query Frame = 1
Query:  274 SIKAGLAQMLRGGAIVEVSSVEQAKIAEAAGACSIMVSEP------SRPGIKRMPDPSLVKSVKRAVSVPVMSRVRVGHFVEAQILESIGLDYIDESEVLGLADEYNFINKHNFRFPFVCGCRNLGEALRRIREGAAMIRIQGDLLNSGNIVETVKNVRSLMGDIRILNNMDEDEVFAFAKKIAAPYDLV 825
            +IK GLA+ML+GG I++V + EQA+IA+ AGA ++M  E          GI RM DP L+K +   VS+PVM++ R+GHFVEAQILES+G+D+IDESEVL  ADE N I+K +F+ PFVCGC NLGEALRRI EGAA+IR +G+   +GNIVE V+ +R +  DI  + N D+ E+ A AK + APYDLV
Sbjct:    5 NIKIGLAEMLKGGVIMDVVNAEQAEIAQQAGAVAVMALERVPADIRKDGGIARMSDPKLIKEIMSVVSIPVMAKARIGHFVEAQILESLGVDFIDESEVLTPADELNHIDKDSFKVPFVCGCTNLGEALRRIGEGAALIRTKGE-AGTGNIVEAVRQLRQVNKDINYIKNADKSELMAIAKNLQAPYDLV 193          
BLAST of FC877876 vs. ExPASy Swiss-Prot
Match: PDXS_CORDI (Pyridoxal biosynthesis lyase pdxS OS=Corynebacterium diphtheriae GN=pdxS PE=3 SV=1)

HSP 1 Score: 202.986 bits (515), Expect = 1.738e-51
Identity = 104/191 (54.45%), Postives = 142/191 (74.35%), Query Frame = 1
Query:  277 IKAGLAQMLRGGAIVEVSSVEQAKIAEAAGACSIMVSEP------SRPGIKRMPDPSLVKSVKRAVSVPVMSRVRVGHFVEAQILESIGLDYIDESEVLGLADEYNFINKHNFRFPFVCGCRNLGEALRRIREGAAMIRIQGDLLNSGNIVETVKNVRSLMGDIRILNNMDEDEVFAFAKKIAAPYDLVAQ 831
            +K GLA ML+GG I++V + EQA+IAE AGA ++M  E       ++ G+ RM DP L++ +  AVS+PVM++ R+GHFVEAQILES+G+D+IDESEVL  AD  N I+K NF  PFVCG  NLGEALRRI EGAAMIR +G+   +G++ E VK++R++ G+I  L +MDED+++  AK+I APYDLV +
Sbjct:   12 VKRGLADMLKGGVIMDVVTPEQARIAEDAGASAVMALERVPADIRAQGGVARMSDPDLIEGIVNAVSIPVMAKARIGHFVEAQILESLGVDFIDESEVLSPADYVNHIDKWNFDVPFVCGATNLGEALRRITEGAAMIRSKGE-AGTGDVSEAVKHLRTIRGEINRLRSMDEDQLYVAAKEIQAPYDLVRE 201          
BLAST of FC877876 vs. ExPASy Swiss-Prot
Match: PDXS_PARUW (Pyridoxal biosynthesis lyase pdxS OS=Protochlamydia amoebophila (strain UWE25) GN=pdxS PE=3 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 2.270e-51
Identity = 107/195 (54.87%), Postives = 146/195 (74.87%), Query Frame = 1
Query:  259 KKNPFSIKAGLAQMLRGGAIVEVSSVEQAKIAEAAGACSIMVSE--PS----RPGIKRMPDPSLVKSVKRAVSVPVMSRVRVGHFVEAQILESIGLDYIDESEVLGLADEYNFINKHNFRFPFVCGCRNLGEALRRIREGAAMIRIQGDLLNSGNIVETVKNVRSLMGDIRILNNMDEDEVFAFAKKIAAPYDLV 825
            +K  F IK  LA+ML+GG I++V++ EQAKIAE AGA ++M  E  PS    + GI RM +P L++ ++  VS+PVM++ R+GHFVEAQILES+ +D+IDESEVL  ADE N I+KH F+ PFVCGCR+LGEALRRI EGAAMIR +G+   +GN+VE V+++R++  +IR L  MD  E+ A AK++ AP+ LV
Sbjct:    8 EKGSFEIKVALAEMLKGGVIMDVTNSEQAKIAEDAGAVAVMALERIPSDIRVQGGIARMSNPELIQKIQETVSIPVMAKCRIGHFVEAQILESLQVDFIDESEVLTPADEENHIDKHIFKVPFVCGCRDLGEALRRIGEGAAMIRTKGE-AGTGNVVEAVRHMRAINREIRHLMLMDSSELMAEAKRLGAPFHLV 201          
BLAST of FC877876 vs. ExPASy Swiss-Prot
Match: PDXS_THEPX (Pyridoxal biosynthesis lyase pdxS OS=Thermoanaerobacter sp. (strain X514) GN=pdxS PE=3 SV=1)

HSP 1 Score: 202.216 bits (513), Expect = 2.965e-51
Identity = 104/196 (53.06%), Postives = 143/196 (72.96%), Query Frame = 1
Query:  271 FSIKAGLAQMLRGGAIVEVSSVEQAKIAEAAGACSIMVSEP------SRPGIKRMPDPSLVKSVKRAVSVPVMSRVRVGHFVEAQILESIGLDYIDESEVLGLADEYNFINKHNFRFPFVCGCRNLGEALRRIREGAAMIRIQGDLLNSGNIVETVKNVRSLMGDIRILNNMDEDEVFAFAKKIAAPYDLVAQTKQ 840
            + +   LAQML+GG I++V++ EQA IAE AGA ++M  E       +R G+ RM DP ++K +K AVS+PVM++VR+GHFVEAQILE++G+D+IDESEVL  ADE   I+K  F+ PFVCG RNLGEALRRI EGA+MIR +G+   +GN+VE V+++R +  +I+ L  + EDE+ A AK++ APYDLV    Q
Sbjct:    5 YELNKNLAQMLKGGVIMDVTTPEQAVIAEKAGAVAVMALERVPADIRARGGVARMSDPKIIKEIKAAVSIPVMAKVRIGHFVEAQILEALGIDFIDESEVLTPADEMYHIDKWAFKIPFVCGARNLGEALRRIGEGASMIRTKGE-AGTGNVVEAVRHMRIINAEIKRLTTLREDELMAAAKELQAPYDLVKYVAQ 199          
BLAST of FC877876 vs. ExPASy Swiss-Prot
Match: PDXS_THETN (Pyridoxal biosynthesis lyase pdxS OS=Thermoanaerobacter tengcongensis GN=pdxS PE=3 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 3.872e-51
Identity = 102/196 (52.04%), Postives = 144/196 (73.47%), Query Frame = 1
Query:  271 FSIKAGLAQMLRGGAIVEVSSVEQAKIAEAAGACSIMVSEP------SRPGIKRMPDPSLVKSVKRAVSVPVMSRVRVGHFVEAQILESIGLDYIDESEVLGLADEYNFINKHNFRFPFVCGCRNLGEALRRIREGAAMIRIQGDLLNSGNIVETVKNVRSLMGDIRILNNMDEDEVFAFAKKIAAPYDLVAQTKQ 840
            + +   LAQML+GG I++V++ E+A IAE AGA ++M  E       +R G+ RM DP ++K +K AVS+PVM++VR+GHFVEAQILE++G+D+IDESEVL  ADE   INK +F+ PFVCG +NLGEALRRI EGA+MIR +G+   +GN+VE V+++R +  +I+ L  + E+E+ A AK++ APYDLV    Q
Sbjct:    5 YELNKNLAQMLKGGVIMDVTTPEEAIIAEKAGAVAVMALERVPADIRARGGVARMSDPKIIKEIKAAVSIPVMAKVRIGHFVEAQILEALGIDFIDESEVLTPADEMYHINKWDFKVPFVCGAKNLGEALRRIAEGASMIRTKGE-AGTGNVVEAVRHMRMINAEIKRLTTLGEEELMAAAKELQAPYDLVKYVAQ 199          
BLAST of FC877876 vs. ExPASy Swiss-Prot
Match: PDXS_THEP3 (Pyridoxal biosynthesis lyase pdxS OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=pdxS PE=3 SV=1)

HSP 1 Score: 200.675 bits (509), Expect = 8.627e-51
Identity = 103/196 (52.55%), Postives = 143/196 (72.96%), Query Frame = 1
Query:  271 FSIKAGLAQMLRGGAIVEVSSVEQAKIAEAAGACSIMVSEP------SRPGIKRMPDPSLVKSVKRAVSVPVMSRVRVGHFVEAQILESIGLDYIDESEVLGLADEYNFINKHNFRFPFVCGCRNLGEALRRIREGAAMIRIQGDLLNSGNIVETVKNVRSLMGDIRILNNMDEDEVFAFAKKIAAPYDLVAQTKQ 840
            + +   LAQML+GG I++V++ EQA IAE AGA ++M  E       +R G+ RM DP ++K +K AVS+PVM++VR+GHFVEAQILE++G+D+IDESEVL  ADE   I+K  F+ PFVCG RNLGEALRRI EGA+MIR +G+   +GN+VE V+++R +  +I+ L  + EDE+ A AK++ APY+LV    Q
Sbjct:    5 YELNKNLAQMLKGGVIMDVTTPEQAVIAEKAGAVAVMALERVPADIRARGGVARMSDPKIIKEIKAAVSIPVMAKVRIGHFVEAQILEALGIDFIDESEVLTPADEMYHIDKWAFKIPFVCGARNLGEALRRIGEGASMIRTKGE-AGTGNVVEAVRHMRIINAEIKRLTTLREDELMAAAKELQAPYELVKYVAQ 199          
The following BLAST results are available for this feature:
BLAST of FC877876 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 208
Match NameE-valueIdentityDescription
PDXS_FRATN7.803e-5255.26Pyridoxal biosynthesis lyase pdxS OS=Francisella t... [more]
PDXS_FRATM7.803e-5255.26Pyridoxal biosynthesis lyase pdxS OS=Francisella t... [more]
PDXS_FRATH7.803e-5255.26Pyridoxal biosynthesis lyase pdxS OS=Francisella t... [more]
PDXS_FRATF7.803e-5255.26Pyridoxal biosynthesis lyase pdxS OS=Francisella t... [more]
PDXS_FRAT17.803e-5255.26Pyridoxal biosynthesis lyase pdxS OS=Francisella t... [more]
PDXS_CORDI1.738e-5154.45Pyridoxal biosynthesis lyase pdxS OS=Corynebacteri... [more]
PDXS_PARUW2.270e-5154.87Pyridoxal biosynthesis lyase pdxS OS=Protochlamydi... [more]
PDXS_THEPX2.965e-5153.06Pyridoxal biosynthesis lyase pdxS OS=Thermoanaerob... [more]
PDXS_THETN3.872e-5152.04Pyridoxal biosynthesis lyase pdxS OS=Thermoanaerob... [more]
PDXS_THEP38.627e-5152.55Pyridoxal biosynthesis lyase pdxS OS=Thermoanaerob... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA94CE03RM1 IVIA1 Citrus clementina cDNA clone IC0AAA94CE03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877876 ID=FC877876; Name=FC877876; organism=Citrus clementina; type=EST; length=841bp
TCGAAATTTCTACACTAATCAATCAATTCCCCACCGACTAACCCCACCTT
CGAAGCTCTTCAGAACCTTCTCGAACTCGCCCCAATCCTCACCCTCCCTT
CAATTTTATAAACCCTTTCTACAAAAAGAAACCCAGTACTCGATCAAACG
ATTCAATAACTACGCTTCTCGCATCAGTGAGACATTTTTACAAACGCCTT
TGCAATGGCCGAAGACGGAGCGGTCACAGTGTACGGTGGCAGCGCCATTA
CTGACGCCAAGAAGAACCCGTTTTCGATCAAAGCCGGCCTTGCCCAAATG
CTACGTGGCGGGGCCATTGTTGAAGTCTCCAGTGTGGAACAAGCCAAGAT
CGCCGAAGCAGCTGGCGCCTGTTCTATCATGGTATCCGAGCCCAGCCGGC
CCGGCATTAAGCGCATGCCGGATCCTTCTCTCGTTAAAAGCGTTAAACGC
GCCGTTTCAGTCCCCGTTATGTCACGTGTTCGTGTTGGGCATTTTGTTGA
AGCGCAGATTCTTGAAAGTATTGGGCTCGATTACATTGACGAGAGTGAGG
TTTTAGGATTAGCTGATGAATATAATTTTATTAACAAACATAACTTTAGG
TTCCCGTTTGTGTGTGGTTGTAGGAATCTTGGTGAAGCTTTGAGGAGAAT
TAGAGAAGGAGCTGCTATGATAAGAATACAAGGGGATTTGTTAAATTCTG
GTAATATTGTCGAGACTGTTAAAAATGTGAGGTCGTTAATGGGAGATATT
CGAATTTTGAATAACATGGATGAAGATGAGGTCTTCGCGTTTGCTAAGAA
GATAGCGGCTCCTTATGATTTGGTGGCTCAAACTAAACAAA
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