FC877876

Overview
NameFC877876
Unique NameFC877876
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length841
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11861 contig Ccv1_Contig11861:34..875. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC877876 vs. ExPASy Swiss-Prot
Match: PDXS_CORGL (Pyridoxal biosynthesis lyase pdxS OS=Corynebacterium glutamicum GN=pdxS PE=1 SV=2)

HSP 1 Score: 200.675 bits (509), Expect = 8.627e-51
Identity = 105/208 (50.48%), Postives = 147/208 (70.67%), Query Frame = 1
Query:  235 GGSAITDAKKN---PFSIKAGLAQMLRGGAIVEVSSVEQAKIAEAAGACSIMVSEP------SRPGIKRMPDPSLVKSVKRAVSVPVMSRVRVGHFVEAQILESIGLDYIDESEVLGLADEYNFINKHNFRFPFVCGCRNLGEALRRIREGAAMIRIQGDLLNSGNIVETVKNVRSLMGDIRILNNMDEDEVFAFAKKIAAPYDLVAQ 831
            G S +T+ ++       +K GLA ML+GG I++V + EQA+IAE AGA ++M  E       S+ G+ RM DP L++ +  AVS+PVM++ R+GHFVEAQ+LE++G+D+IDESEVL  AD  + INK  F  PFVCG  NLGEALRRI EGAAMIR +G+   +G++ E V+++R++ GDI  L ++DEDE+F  AK+  APYDLV +
Sbjct:   15 GSSVMTETQETYQATTRVKRGLADMLKGGVIMDVVTPEQARIAEDAGASAVMALERVPADIRSQGGVARMSDPDLIEGIVNAVSIPVMAKARIGHFVEAQVLEALGVDFIDESEVLSPADYTHHINKWKFDVPFVCGATNLGEALRRITEGAAMIRSKGE-AGTGDVSEAVRHLRTIRGDINRLRSLDEDELFVAAKEFQAPYDLVRE 221          
BLAST of FC877876 vs. ExPASy Swiss-Prot
Match: PDXS_FRAP2 (Pyridoxal biosynthesis lyase pdxS OS=Francisella philomiragia subsp. philomiragia (strain ATCC 25017) GN=pdxS PE=3 SV=1)

HSP 1 Score: 199.904 bits (507), Expect = 1.472e-50
Identity = 102/190 (53.68%), Postives = 135/190 (71.05%), Query Frame = 1
Query:  274 SIKAGLAQMLRGGAIVEVSSVEQAKIAEAAGACSIMVSEP------SRPGIKRMPDPSLVKSVKRAVSVPVMSRVRVGHFVEAQILESIGLDYIDESEVLGLADEYNFINKHNFRFPFVCGCRNLGEALRRIREGAAMIRIQGDLLNSGNIVETVKNVRSLMGDIRILNNMDEDEVFAFAKKIAAPYDLV 825
            ++K GLA+ML+GG I++V + EQA+IA+ AGA ++M  E          GI RM DP L+K +    S+PVM++ R+GHFVEAQILES+G+D+IDESEVL  AD+ N I K NF+ PFVCGC NLGEALRRI EGAA+IR +G+   +GNIVE V+ +R +  DI  +   D+ E+ A AK + APYDLV
Sbjct:    5 NLKIGLAEMLKGGVIMDVVNAEQAEIAQQAGAVAVMALERVPADIRKDGGIARMSDPKLIKEIMSVTSIPVMAKARIGHFVEAQILESLGVDFIDESEVLSPADDLNHIAKDNFKVPFVCGCTNLGEALRRIGEGAALIRTKGE-AGTGNIVEAVRQLRQVNKDINYIKGADQSELMAIAKNMQAPYDLV 193          
BLAST of FC877876 vs. ExPASy Swiss-Prot
Match: PDXS_DESDA (Pyridoxal biosynthesis lyase pdxS OS=Desulfovibrio desulfuricans (strain ATCC 27774 / DSM 6949) GN=pdxS PE=3 SV=1)

HSP 1 Score: 198.364 bits (503), Expect = 4.281e-50
Identity = 101/188 (53.72%), Postives = 140/188 (74.47%), Query Frame = 1
Query:  277 IKAGLAQMLRGGAIVEVSSVEQAKIAEAAGACSIMVSEP------SRPGIKRMPDPSLVKSVKRAVSVPVMSRVRVGHFVEAQILESIGLDYIDESEVLGLADEYNFINKHNFRFPFVCGCRNLGEALRRIREGAAMIRIQGDLLNSGNIVETVKNVRSLMGDIRILNNMDEDEVFAFAKKIAAPYDL 822
            +K GLA+ML+GG I++V++ EQAKIAE AGAC++M  E       +  G+ RM DP++VK +    ++PVM++ R+GHFVEA+ILES+G+DYIDESEVL  AD+   I+K +F  PFVCGCRNLGEALRRI EGAAMIR +G+   +GN+VE V++ R +M ++R+L  + E EV  FAK++ AP +L
Sbjct:    8 LKTGLAEMLKGGVIMDVTTPEQAKIAEEAGACAVMALERVPADIRAAGGVARMADPTIVKKIMEVATIPVMAKARIGHFVEARILESMGVDYIDESEVLTPADDKYHIDKRDFTVPFVCGCRNLGEALRRIAEGAAMIRTKGE-PGTGNVVEAVRHCRQVMDEVRMLCALPEAEVPNFAKEMGAPLEL 194          
BLAST of FC877876 vs. ExPASy Swiss-Prot
Match: PDXS_CLOAB (Pyridoxal biosynthesis lyase pdxS OS=Clostridium acetobutylicum GN=pdxS PE=3 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 9.538e-50
Identity = 98/185 (52.97%), Postives = 140/185 (75.68%), Query Frame = 1
Query:  289 LAQMLRGGAIVEVSSVEQAKIAEAAGACSIMVSEP------SRPGIKRMPDPSLVKSVKRAVSVPVMSRVRVGHFVEAQILESIGLDYIDESEVLGLADEYNFINKHNFRFPFVCGCRNLGEALRRIREGAAMIRIQGDLLNSGNIVETVKNVRSLMGDIRILNNMDEDEVFAFAKKIAAPYDLV 825
            LAQML+GG I++V + EQA IAE AGAC++M  E        + G+ RM DP ++K ++ +V++PVM++VR+GHFVEA+IL+S+G+D+IDESEVL  AD+   I+K  F+ PFVCG RNLGEALRRI EGA+MIR +G+   +GN+VE VK++R++M +IR + N  ++E+   AK++ APYDLV
Sbjct:   12 LAQMLKGGVIMDVINKEQAIIAEKAGACAVMALERVPADIRKQGGVARMSDPKMIKEIRESVTIPVMAKVRIGHFVEAEILQSLGIDFIDESEVLTPADDSYHIDKKAFKVPFVCGARNLGEALRRIGEGASMIRTKGE-AGTGNVVEAVKHMRTVMDEIRRVKNAAKEEIMTIAKELGAPYDLV 195          
BLAST of FC877876 vs. ExPASy Swiss-Prot
Match: PDXS_SYNAS (Pyridoxal biosynthesis lyase pdxS OS=Syntrophus aciditrophicus (strain SB) GN=pdxS PE=3 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 3.624e-49
Identity = 102/198 (51.52%), Postives = 141/198 (71.21%), Query Frame = 1
Query:  262 KNPFSIKAGLAQMLRGGAIVEVSSVEQAKIAEAAGACSIMVSEP------SRPGIKRMPDPSLVKSVKRAVSVPVMSRVRVGHFVEAQILESIGLDYIDESEVLGLADEYNFINKHNFRFPFVCGCRNLGEALRRIREGAAMIRIQGDLLNSGNIVETVKNVRSLMGDIRILNNMDEDEVFAFAKKIAAPYDLVAQTK 837
            K  + +   LAQML+GG I++V++VEQA+IAE AGA ++M  E       ++ G+ RM DPS++  +K++VS+PVM++ R+GHFVEAQILE++ +DYIDESEVL  ADE   I+K  F  PFVCG RNLGEALRRI EGAAMIR +G+   +GN+VE V+++R++  +IR L  M  +EV  FAK    PY+L  Q +
Sbjct:    3 KKRYELNVQLAQMLKGGVIMDVTNVEQARIAEDAGAVAVMALERVPADIRAQGGVARMSDPSMIVEIKKSVSIPVMAKARIGHFVEAQILEALKIDYIDESEVLTPADEECHIDKTRFSIPFVCGARNLGEALRRIAEGAAMIRTKGE-AGTGNVVEAVRHMRTMNREIRQLVGMPVEEVTVFAKSNGIPYELALQVR 199          
BLAST of FC877876 vs. ExPASy Swiss-Prot
Match: PDXS_BACCN (Pyridoxal biosynthesis lyase pdxS OS=Bacillus cereus subsp. cytotoxis (strain NVH 391-98) GN=pdxS PE=3 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 4.734e-49
Identity = 96/194 (49.48%), Postives = 142/194 (73.20%), Query Frame = 1
Query:  277 IKAGLAQMLRGGAIVEVSSVEQAKIAEAAGACSIMVSEP------SRPGIKRMPDPSLVKSVKRAVSVPVMSRVRVGHFVEAQILESIGLDYIDESEVLGLADEYNFINKHNFRFPFVCGCRNLGEALRRIREGAAMIRIQGDLLNSGNIVETVKNVRSLMGDIRILNNMDEDEVFAFAKKIAAPYDLVAQTKQ 840
            +K G+A+M +GG I++V + EQAKIAE AGA ++M  E       +  G+ RM DP++V+ V  AVS+PVM++ R+GH VEA++LES+G+DYIDESEVL  ADE N +NK ++  PFVCGCR++GEA RRI EGA+M+R +G+   +GNIVE V+++R +  +IR + N+ EDE+  +AK   APY+++ + K+
Sbjct:   10 VKRGMAEMQKGGVIMDVVNAEQAKIAEEAGAVAVMALERVPADIRAAGGVARMADPTIVEEVMGAVSIPVMAKCRIGHLVEARVLESLGVDYIDESEVLTPADEVNHLNKRDYTVPFVCGCRDIGEAARRIAEGASMLRTKGE-PGTGNIVEAVRHMRQVNAEIRQVANLREDELMTYAKNTGAPYEVLLEIKR 202          
BLAST of FC877876 vs. ExPASy Swiss-Prot
Match: PDXS_MYCTU (Pyridoxal biosynthesis lyase pdxS OS=Mycobacterium tuberculosis GN=pdxS PE=3 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 6.182e-49
Identity = 98/191 (51.31%), Postives = 142/191 (74.35%), Query Frame = 1
Query:  277 IKAGLAQMLRGGAIVEVSSVEQAKIAEAAGACSIMVSEP------SRPGIKRMPDPSLVKSVKRAVSVPVMSRVRVGHFVEAQILESIGLDYIDESEVLGLADEYNFINKHNFRFPFVCGCRNLGEALRRIREGAAMIRIQGDLLNSGNIVETVKNVRSLMGDIRILNNMDEDEVFAFAKKIAAPYDLVAQ 831
            +K G+A+ML+GG I++V + EQA+IAE AGA ++M  E       ++ G+ RM DP +++ +  AV++PVM++VR+GHFVEAQIL+++G+DYIDESEVL  AD  + I+K NF  PFVCG  NLGEALRRI EGAAMIR +G+   +G++     ++R++ G+IR L +M EDE+F  AK++ APY+LVA+
Sbjct:   14 VKRGMAEMLKGGVIMDVVTPEQARIAEGAGAVAVMALERVPADIRAQGGVSRMSDPDMIEGIIAAVTIPVMAKVRIGHFVEAQILQTLGVDYIDESEVLTPADYAHHIDKWNFTVPFVCGATNLGEALRRISEGAAMIRSKGE-AGTGDVSNATTHMRAIGGEIRRLTSMSEDELFVAAKELQAPYELVAE 203          
BLAST of FC877876 vs. ExPASy Swiss-Prot
Match: PDXS_MYCTA (Pyridoxal biosynthesis lyase pdxS OS=Mycobacterium tuberculosis (strain ATCC 25177 / H37Ra) GN=pdxS PE=3 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 6.182e-49
Identity = 98/191 (51.31%), Postives = 142/191 (74.35%), Query Frame = 1
Query:  277 IKAGLAQMLRGGAIVEVSSVEQAKIAEAAGACSIMVSEP------SRPGIKRMPDPSLVKSVKRAVSVPVMSRVRVGHFVEAQILESIGLDYIDESEVLGLADEYNFINKHNFRFPFVCGCRNLGEALRRIREGAAMIRIQGDLLNSGNIVETVKNVRSLMGDIRILNNMDEDEVFAFAKKIAAPYDLVAQ 831
            +K G+A+ML+GG I++V + EQA+IAE AGA ++M  E       ++ G+ RM DP +++ +  AV++PVM++VR+GHFVEAQIL+++G+DYIDESEVL  AD  + I+K NF  PFVCG  NLGEALRRI EGAAMIR +G+   +G++     ++R++ G+IR L +M EDE+F  AK++ APY+LVA+
Sbjct:   14 VKRGMAEMLKGGVIMDVVTPEQARIAEGAGAVAVMALERVPADIRAQGGVSRMSDPDMIEGIIAAVTIPVMAKVRIGHFVEAQILQTLGVDYIDESEVLTPADYAHHIDKWNFTVPFVCGATNLGEALRRISEGAAMIRSKGE-AGTGDVSNATTHMRAIGGEIRRLTSMSEDELFVAAKELQAPYELVAE 203          
BLAST of FC877876 vs. ExPASy Swiss-Prot
Match: PDXS_MYCBT (Pyridoxal biosynthesis lyase pdxS OS=Mycobacterium bovis (strain BCG / Tokyo 172 / ATCC 35737 / TMC 1019) GN=pdxS PE=3 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 6.182e-49
Identity = 98/191 (51.31%), Postives = 142/191 (74.35%), Query Frame = 1
Query:  277 IKAGLAQMLRGGAIVEVSSVEQAKIAEAAGACSIMVSEP------SRPGIKRMPDPSLVKSVKRAVSVPVMSRVRVGHFVEAQILESIGLDYIDESEVLGLADEYNFINKHNFRFPFVCGCRNLGEALRRIREGAAMIRIQGDLLNSGNIVETVKNVRSLMGDIRILNNMDEDEVFAFAKKIAAPYDLVAQ 831
            +K G+A+ML+GG I++V + EQA+IAE AGA ++M  E       ++ G+ RM DP +++ +  AV++PVM++VR+GHFVEAQIL+++G+DYIDESEVL  AD  + I+K NF  PFVCG  NLGEALRRI EGAAMIR +G+   +G++     ++R++ G+IR L +M EDE+F  AK++ APY+LVA+
Sbjct:   14 VKRGMAEMLKGGVIMDVVTPEQARIAEGAGAVAVMALERVPADIRAQGGVSRMSDPDMIEGIIAAVTIPVMAKVRIGHFVEAQILQTLGVDYIDESEVLTPADYAHHIDKWNFTVPFVCGATNLGEALRRISEGAAMIRSKGE-AGTGDVSNATTHMRAIGGEIRRLTSMSEDELFVAAKELQAPYELVAE 203          
BLAST of FC877876 vs. ExPASy Swiss-Prot
Match: PDXS_MYCBP (Pyridoxal biosynthesis lyase pdxS OS=Mycobacterium bovis (strain BCG / Pasteur 1173P2) GN=pdxS PE=3 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 6.182e-49
Identity = 98/191 (51.31%), Postives = 142/191 (74.35%), Query Frame = 1
Query:  277 IKAGLAQMLRGGAIVEVSSVEQAKIAEAAGACSIMVSEP------SRPGIKRMPDPSLVKSVKRAVSVPVMSRVRVGHFVEAQILESIGLDYIDESEVLGLADEYNFINKHNFRFPFVCGCRNLGEALRRIREGAAMIRIQGDLLNSGNIVETVKNVRSLMGDIRILNNMDEDEVFAFAKKIAAPYDLVAQ 831
            +K G+A+ML+GG I++V + EQA+IAE AGA ++M  E       ++ G+ RM DP +++ +  AV++PVM++VR+GHFVEAQIL+++G+DYIDESEVL  AD  + I+K NF  PFVCG  NLGEALRRI EGAAMIR +G+   +G++     ++R++ G+IR L +M EDE+F  AK++ APY+LVA+
Sbjct:   14 VKRGMAEMLKGGVIMDVVTPEQARIAEGAGAVAVMALERVPADIRAQGGVSRMSDPDMIEGIIAAVTIPVMAKVRIGHFVEAQILQTLGVDYIDESEVLTPADYAHHIDKWNFTVPFVCGATNLGEALRRISEGAAMIRSKGE-AGTGDVSNATTHMRAIGGEIRRLTSMSEDELFVAAKELQAPYELVAE 203          
The following BLAST results are available for this feature:
BLAST of FC877876 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 208
Match NameE-valueIdentityDescription
PDXS_CORGL8.627e-5150.48Pyridoxal biosynthesis lyase pdxS OS=Corynebacteri... [more]
PDXS_FRAP21.472e-5053.68Pyridoxal biosynthesis lyase pdxS OS=Francisella p... [more]
PDXS_DESDA4.281e-5053.72Pyridoxal biosynthesis lyase pdxS OS=Desulfovibrio... [more]
PDXS_CLOAB9.538e-5052.97Pyridoxal biosynthesis lyase pdxS OS=Clostridium a... [more]
PDXS_SYNAS3.624e-4951.52Pyridoxal biosynthesis lyase pdxS OS=Syntrophus ac... [more]
PDXS_BACCN4.734e-4949.48Pyridoxal biosynthesis lyase pdxS OS=Bacillus cere... [more]
PDXS_MYCTU6.182e-4951.31Pyridoxal biosynthesis lyase pdxS OS=Mycobacterium... [more]
PDXS_MYCTA6.182e-4951.31Pyridoxal biosynthesis lyase pdxS OS=Mycobacterium... [more]
PDXS_MYCBT6.182e-4951.31Pyridoxal biosynthesis lyase pdxS OS=Mycobacterium... [more]
PDXS_MYCBP6.182e-4951.31Pyridoxal biosynthesis lyase pdxS OS=Mycobacterium... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA94CE03RM1 IVIA1 Citrus clementina cDNA clone IC0AAA94CE03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877876 ID=FC877876; Name=FC877876; organism=Citrus clementina; type=EST; length=841bp
TCGAAATTTCTACACTAATCAATCAATTCCCCACCGACTAACCCCACCTT
CGAAGCTCTTCAGAACCTTCTCGAACTCGCCCCAATCCTCACCCTCCCTT
CAATTTTATAAACCCTTTCTACAAAAAGAAACCCAGTACTCGATCAAACG
ATTCAATAACTACGCTTCTCGCATCAGTGAGACATTTTTACAAACGCCTT
TGCAATGGCCGAAGACGGAGCGGTCACAGTGTACGGTGGCAGCGCCATTA
CTGACGCCAAGAAGAACCCGTTTTCGATCAAAGCCGGCCTTGCCCAAATG
CTACGTGGCGGGGCCATTGTTGAAGTCTCCAGTGTGGAACAAGCCAAGAT
CGCCGAAGCAGCTGGCGCCTGTTCTATCATGGTATCCGAGCCCAGCCGGC
CCGGCATTAAGCGCATGCCGGATCCTTCTCTCGTTAAAAGCGTTAAACGC
GCCGTTTCAGTCCCCGTTATGTCACGTGTTCGTGTTGGGCATTTTGTTGA
AGCGCAGATTCTTGAAAGTATTGGGCTCGATTACATTGACGAGAGTGAGG
TTTTAGGATTAGCTGATGAATATAATTTTATTAACAAACATAACTTTAGG
TTCCCGTTTGTGTGTGGTTGTAGGAATCTTGGTGAAGCTTTGAGGAGAAT
TAGAGAAGGAGCTGCTATGATAAGAATACAAGGGGATTTGTTAAATTCTG
GTAATATTGTCGAGACTGTTAAAAATGTGAGGTCGTTAATGGGAGATATT
CGAATTTTGAATAACATGGATGAAGATGAGGTCTTCGCGTTTGCTAAGAA
GATAGCGGCTCCTTATGATTTGGTGGCTCAAACTAAACAAA
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