FC877876

Overview
NameFC877876
Unique NameFC877876
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length841
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC877876 vs. ExPASy Swiss-Prot
Match: PDXS_MYCBO (Pyridoxal biosynthesis lyase pdxS OS=Mycobacterium bovis GN=pdxS PE=3 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 6.182e-49
Identity = 98/191 (51.31%), Postives = 142/191 (74.35%), Query Frame = 1
Query:  277 IKAGLAQMLRGGAIVEVSSVEQAKIAEAAGACSIMVSEP------SRPGIKRMPDPSLVKSVKRAVSVPVMSRVRVGHFVEAQILESIGLDYIDESEVLGLADEYNFINKHNFRFPFVCGCRNLGEALRRIREGAAMIRIQGDLLNSGNIVETVKNVRSLMGDIRILNNMDEDEVFAFAKKIAAPYDLVAQ 831
            +K G+A+ML+GG I++V + EQA+IAE AGA ++M  E       ++ G+ RM DP +++ +  AV++PVM++VR+GHFVEAQIL+++G+DYIDESEVL  AD  + I+K NF  PFVCG  NLGEALRRI EGAAMIR +G+   +G++     ++R++ G+IR L +M EDE+F  AK++ APY+LVA+
Sbjct:   14 VKRGMAEMLKGGVIMDVVTPEQARIAEGAGAVAVMALERVPADIRAQGGVSRMSDPDMIEGIIAAVTIPVMAKVRIGHFVEAQILQTLGVDYIDESEVLTPADYAHHIDKWNFTVPFVCGATNLGEALRRISEGAAMIRSKGE-AGTGDVSNATTHMRAIGGEIRRLTSMSEDELFVAAKELQAPYELVAE 203          
BLAST of FC877876 vs. ExPASy Swiss-Prot
Match: PDXS_THEP1 (Pyridoxal biosynthesis lyase pdxS OS=Thermotoga petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995) GN=pdxS PE=3 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 1.055e-48
Identity = 98/202 (48.51%), Postives = 142/202 (70.30%), Query Frame = 1
Query:  253 DAKKNPFSIKAGLAQMLRGGAIVEVSSVEQAKIAEAAGACSIMVSEP------SRPGIKRMPDPSLVKSVKRAVSVPVMSRVRVGHFVEAQILESIGLDYIDESEVLGLADEYNFINKHNFRFPFVCGCRNLGEALRRIREGAAMIRIQGDLLNSGNIVETVKNVRSLMGDIRILNNMDEDEVFAFAKKIAAPYDLVAQTKQ 840
            + KK  + IK G A+M +GG I++V+S EQAKIAE AGA ++M  E          G+ RM   + ++ +  AVS+PVM++VR+GH  EA+ILE +G+D+IDESEVL  AD+   INKH F+ PFVCG R+LGEALRRI EGAAMIR +G+   +GN+VE VK++R +M  I+ +  M+++E+ A+ K+I AP +L+ + K+
Sbjct:    2 EIKKGTWIIKKGFAEMFKGGVIMDVTSAEQAKIAEEAGAVAVMALERVPADIRKEGGVARMASIAKIREIMEAVSIPVMAKVRIGHIAEAKILEELGVDFIDESEVLTPADDRFHINKHEFKVPFVCGARDLGEALRRIAEGAAMIRTKGE-AGTGNVVEAVKHMRRMMEQIKQVTKMEDEELVAYGKEIGAPVELLREVKR 202          
BLAST of FC877876 vs. ExPASy Swiss-Prot
Match: PDXS_PROAC (Pyridoxal biosynthesis lyase pdxS OS=Propionibacterium acnes GN=pdxS PE=3 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 1.055e-48
Identity = 99/191 (51.83%), Postives = 140/191 (73.30%), Query Frame = 1
Query:  277 IKAGLAQMLRGGAIVEVSSVEQAKIAEAAGACSIMVSEP------SRPGIKRMPDPSLVKSVKRAVSVPVMSRVRVGHFVEAQILESIGLDYIDESEVLGLADEYNFINKHNFRFPFVCGCRNLGEALRRIREGAAMIRIQGDLLNSGNIVETVKNVRSLMGDIRILNNMDEDEVFAFAKKIAAPYDLVAQ 831
            +K GLA ML+GG I++V + EQAKIAE AGAC++M  E       ++ G+ RM DP L++ +  AVS+PVM++ R+GHFVEAQ+LES+ +D+IDESEVL  AD  N I+K  F  PFVCG  NLGEALRRI EGAAMIR +G+   +G++ E V+++R++  ++  L++M  DE++  AK++ APYDLVA+
Sbjct:   19 VKRGLADMLKGGVIMDVVTPEQAKIAEDAGACAVMALERVPADIRAQGGVARMSDPDLIEGIIEAVSIPVMAKARIGHFVEAQVLESLRVDFIDESEVLSPADYANHIDKWAFGVPFVCGATNLGEALRRITEGAAMIRSKGE-AGTGDVSEAVRHLRTIRAEMARLSSMSPDELYVAAKELQAPYDLVAE 208          
BLAST of FC877876 vs. ExPASy Swiss-Prot
Match: PDXS_THESQ (Pyridoxal biosynthesis lyase pdxS OS=Thermotoga sp. (strain RQ2) GN=pdxS PE=3 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 1.377e-48
Identity = 98/202 (48.51%), Postives = 142/202 (70.30%), Query Frame = 1
Query:  253 DAKKNPFSIKAGLAQMLRGGAIVEVSSVEQAKIAEAAGACSIMVSEP------SRPGIKRMPDPSLVKSVKRAVSVPVMSRVRVGHFVEAQILESIGLDYIDESEVLGLADEYNFINKHNFRFPFVCGCRNLGEALRRIREGAAMIRIQGDLLNSGNIVETVKNVRSLMGDIRILNNMDEDEVFAFAKKIAAPYDLVAQTKQ 840
            + KK  + IK G A+M +GG I++V+S EQAKIAE AGA ++M  E          G+ RM   + ++ +  AVS+PVM++VR+GH  EA+ILE +G+D+IDESEVL  AD+   INKH F+ PFVCG R+LGEALRRI EGAAMIR +G+   +GN+VE VK++R +M  I+ +  M+++E+ A+ K+I AP +L+ + K+
Sbjct:    2 EIKKGTWIIKKGFAEMFKGGVIMDVTSAEQAKIAEEAGAVAVMALERVPADIRKEGGVARMASIAKIREIMEAVSIPVMAKVRIGHIAEAKILEELGVDFIDESEVLTPADDRFHINKHEFKVPFVCGARDLGEALRRIAEGAAMIRTKGE-AGTGNVVEAVKHMRRVMEQIKQVTKMEDEELVAYGKEIGAPVELLREVKR 202          
BLAST of FC877876 vs. ExPASy Swiss-Prot
Match: PDXS_THEMA (Pyridoxal biosynthesis lyase pdxS OS=Thermotoga maritima GN=pdxS PE=1 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 1.377e-48
Identity = 98/202 (48.51%), Postives = 142/202 (70.30%), Query Frame = 1
Query:  253 DAKKNPFSIKAGLAQMLRGGAIVEVSSVEQAKIAEAAGACSIMVSEP------SRPGIKRMPDPSLVKSVKRAVSVPVMSRVRVGHFVEAQILESIGLDYIDESEVLGLADEYNFINKHNFRFPFVCGCRNLGEALRRIREGAAMIRIQGDLLNSGNIVETVKNVRSLMGDIRILNNMDEDEVFAFAKKIAAPYDLVAQTKQ 840
            + KK  + IK G A+M +GG I++V+S EQAKIAE AGA ++M  E          G+ RM   + ++ +  AVS+PVM++VR+GH  EA+ILE +G+D+IDESEVL  AD+   INKH F+ PFVCG R+LGEALRRI EGAAMIR +G+   +GN+VE VK++R +M  I+ +  M+++E+ A+ K+I AP +L+ + K+
Sbjct:    2 EIKKGTWIIKKGFAEMFKGGVIMDVTSAEQAKIAEEAGAVAVMALERVPADIRKEGGVARMASIAKIREIMEAVSIPVMAKVRIGHIAEAKILEELGVDFIDESEVLTPADDRFHINKHEFKVPFVCGARDLGEALRRIAEGAAMIRTKGE-AGTGNVVEAVKHMRRVMEQIKQVTKMEDEELVAYGKEIGAPVELLREVKR 202          
BLAST of FC877876 vs. ExPASy Swiss-Prot
Match: PDXS_GEOKA (Pyridoxal biosynthesis lyase pdxS OS=Geobacillus kaustophilus GN=pdxS PE=1 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 1.377e-48
Identity = 98/194 (50.52%), Postives = 143/194 (73.71%), Query Frame = 1
Query:  277 IKAGLAQMLRGGAIVEVSSVEQAKIAEAAGACSIMVSEP------SRPGIKRMPDPSLVKSVKRAVSVPVMSRVRVGHFVEAQILESIGLDYIDESEVLGLADEYNFINKHNFRFPFVCGCRNLGEALRRIREGAAMIRIQGDLLNSGNIVETVKNVRSLMGDIRILNNMDEDEVFAFAKKIAAPYDLVAQTKQ 840
            +K G+A+M +GG I++V + EQAKIAEAAGA ++M  E       +  G+ RM DP++++ V  AVS+PVM++VR+GH+VEA++LE++G+DYIDESEVL  ADE   I+K  F  PFVCGCR+LGEA RRI EGA+M+R +G+   +GNIVE V+++R +   IR + NM EDE+ A AK++ AP +++ + K+
Sbjct:    9 VKRGMAEMQKGGVIMDVVNAEQAKIAEAAGAVAVMALERVPADIRAAGGVARMADPTVIEEVMNAVSIPVMAKVRIGHYVEARVLEALGVDYIDESEVLTPADEEFHIDKRQFTVPFVCGCRDLGEAARRIAEGASMLRTKGE-PGTGNIVEAVRHMRKVNAQIRKVVNMSEDELVAEAKQLGAPVEVLREIKR 201          
BLAST of FC877876 vs. ExPASy Swiss-Prot
Match: PDXS_DESHY (Pyridoxal biosynthesis lyase pdxS OS=Desulfitobacterium hafniense (strain Y51) GN=pdxS PE=3 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 1.377e-48
Identity = 100/191 (52.36%), Postives = 138/191 (72.25%), Query Frame = 1
Query:  271 FSIKAGLAQMLRGGAIVEVSSVEQAKIAEAAGACSIMVSEP------SRPGIKRMPDPSLVKSVKRAVSVPVMSRVRVGHFVEAQILESIGLDYIDESEVLGLADEYNFINKHNFRFPFVCGCRNLGEALRRIREGAAMIRIQGDLLNSGNIVETVKNVRSLMGDIRILNNMDEDEVFAFAKKIAAPYDLV 825
            + +   LAQML+GG I++V++ EQAKIAEAAGAC++M  E       +  G+ RM DP ++K +  AVS+PVM++ R+GHFVEAQILE++ +DYIDESEVL  AD+   I+K  F+ PFVCG ++LGEALRRI EGAAMIR +G+   +G+IV+ V+++R +   I  L  M EDE+F  AK++  PYDLV
Sbjct:    6 YELNKELAQMLKGGVIMDVTTPEQAKIAEAAGACAVMALERIPADIRAVGGVSRMSDPKMIKGIMEAVSIPVMAKCRIGHFVEAQILEAVEIDYIDESEVLSPADDVYHIDKTRFKVPFVCGAKDLGEALRRINEGAAMIRTKGE-PGTGDIVQAVRHMRMINRQISRLAGMREDELFQEAKELQVPYDLV 195          
BLAST of FC877876 vs. ExPASy Swiss-Prot
Match: PDXS_DESHD (Pyridoxal biosynthesis lyase pdxS OS=Desulfitobacterium hafniense (strain DCB-2 / DSM 10664) GN=pdxS PE=3 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 1.377e-48
Identity = 100/191 (52.36%), Postives = 138/191 (72.25%), Query Frame = 1
Query:  271 FSIKAGLAQMLRGGAIVEVSSVEQAKIAEAAGACSIMVSEP------SRPGIKRMPDPSLVKSVKRAVSVPVMSRVRVGHFVEAQILESIGLDYIDESEVLGLADEYNFINKHNFRFPFVCGCRNLGEALRRIREGAAMIRIQGDLLNSGNIVETVKNVRSLMGDIRILNNMDEDEVFAFAKKIAAPYDLV 825
            + +   LAQML+GG I++V++ EQAKIAEAAGAC++M  E       +  G+ RM DP ++K +  AVS+PVM++ R+GHFVEAQILE++ +DYIDESEVL  AD+   I+K  F+ PFVCG ++LGEALRRI EGAAMIR +G+   +G+IV+ V+++R +   I  L  M EDE+F  AK++  PYDLV
Sbjct:    6 YELNKELAQMLKGGVIMDVTTPEQAKIAEAAGACAVMALERIPADIRAVGGVSRMSDPKMIKGIMEAVSIPVMAKCRIGHFVEAQILEAVEIDYIDESEVLSPADDVYHIDKTRFKVPFVCGAKDLGEALRRINEGAAMIRTKGE-PGTGDIVQAVRHMRMINRQISRLAGMREDELFQEAKELQVPYDLV 195          
BLAST of FC877876 vs. ExPASy Swiss-Prot
Match: PDX1_SUBDO (Probable pyridoxine biosynthesis SNZERR OS=Suberites domuncula GN=SNZERR PE=2 SV=2)

HSP 1 Score: 192.586 bits (488), Expect = 2.349e-48
Identity = 94/204 (46.08%), Postives = 141/204 (69.12%), Query Frame = 1
Query:  241 SAITDAKKNPFSIKAGLAQMLRGGAIVEVSSVEQAKIAEAAGACSIMVSEP------SRPGIKRMPDPSLVKSVKRAVSVPVMSRVRVGHFVEAQILESIGLDYIDESEVLGLADEYNFINKHNFRFPFVCGCRNLGEALRRIREGAAMIRIQGDLLNSGNIVETVKNVRSLMGDIRILNNMDEDEVFAFAKKIAAPYDLVAQT 834
            SA ++ +    ++K GLAQML+GG I++V + +QA++AE AGAC++M  E          G+ RM DP  +K +   V+VPVM++ R+GHF EAQIL+++G+D+IDESEVL  AD+ N ++K  F  PFVCG R+LGEALRRI EGAAMIR +G+   +GN+VE V++ R +  +IR+   +   E++ +AK++  P DL+ +T
Sbjct:    7 SATSETQTGTMTVKTGLAQMLKGGIIMDVINADQARVAEEAGACAVMALEKVPADIRKDGGVARMADPRKIKEIMDTVTVPVMAKCRIGHFAEAQILQNLGVDFIDESEVLSPADDENHVDKQPFNVPFVCGARSLGEALRRISEGAAMIRTKGE-AGTGNVVEAVRHARQINREIRVAQCLSSAELYGYAKQLGVPLDLLQKT 209          
BLAST of FC877876 vs. ExPASy Swiss-Prot
Match: PDXS_METLZ (Pyridoxal biosynthesis lyase pdxS OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=pdxS PE=3 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 3.068e-48
Identity = 97/194 (50.00%), Postives = 141/194 (72.68%), Query Frame = 1
Query:  262 KNPFSIKAGLAQMLRGGAIVEVSSVEQAKIAEAAGACSIMVSEP------SRPGIKRMPDPSLVKSVKRAVSVPVMSRVRVGHFVEAQILESIGLDYIDESEVLGLADEYNFINKHNFRFPFVCGCRNLGEALRRIREGAAMIRIQGDLLNSGNIVETVKNVRSLMGDIRILNNMDEDEVFAFAKKIAAPYDLV 825
            +N   +   LAQML+GG I++V+S EQAKIAE AGAC++M  E       +  G+ RM DP ++K ++ AVS+PVM++VR+GHFVEAQILE+I +DYIDESEVL  AD+ N I+K+ F  PFVCG R+LGEALRR+ EGA MIR +G+   +G+IV+ V+++R++  +IR + ++ +DE++  AK +  P  L+
Sbjct:    3 ENRSKLNKELAQMLKGGVIMDVTSPEQAKIAEDAGACAVMALERIPADIRAAGGVSRMSDPKMIKGIQNAVSIPVMAKVRIGHFVEAQILEAIEIDYIDESEVLSPADDLNHIDKNKFNVPFVCGARDLGEALRRVAEGATMIRTKGE-AGTGDIVQAVRHMRTMNSEIRRVVSLRQDELYVAAKDMQVPISLL 195          
The following BLAST results are available for this feature:
BLAST of FC877876 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 208
Match NameE-valueIdentityDescription
PDXS_MYCBO6.182e-4951.31Pyridoxal biosynthesis lyase pdxS OS=Mycobacterium... [more]
PDXS_THEP11.055e-4848.51Pyridoxal biosynthesis lyase pdxS OS=Thermotoga pe... [more]
PDXS_PROAC1.055e-4851.83Pyridoxal biosynthesis lyase pdxS OS=Propionibacte... [more]
PDXS_THESQ1.377e-4848.51Pyridoxal biosynthesis lyase pdxS OS=Thermotoga sp... [more]
PDXS_THEMA1.377e-4848.51Pyridoxal biosynthesis lyase pdxS OS=Thermotoga ma... [more]
PDXS_GEOKA1.377e-4850.52Pyridoxal biosynthesis lyase pdxS OS=Geobacillus k... [more]
PDXS_DESHY1.377e-4852.36Pyridoxal biosynthesis lyase pdxS OS=Desulfitobact... [more]
PDXS_DESHD1.377e-4852.36Pyridoxal biosynthesis lyase pdxS OS=Desulfitobact... [more]
PDX1_SUBDO2.349e-4846.08Probable pyridoxine biosynthesis SNZERR OS=Suberit... [more]
PDXS_METLZ3.068e-4850.00Pyridoxal biosynthesis lyase pdxS OS=Methanocorpus... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA94CE03RM1 IVIA1 Citrus clementina cDNA clone IC0AAA94CE03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877876 ID=FC877876; Name=FC877876; organism=Citrus clementina; type=EST; length=841bp
TCGAAATTTCTACACTAATCAATCAATTCCCCACCGACTAACCCCACCTT
CGAAGCTCTTCAGAACCTTCTCGAACTCGCCCCAATCCTCACCCTCCCTT
CAATTTTATAAACCCTTTCTACAAAAAGAAACCCAGTACTCGATCAAACG
ATTCAATAACTACGCTTCTCGCATCAGTGAGACATTTTTACAAACGCCTT
TGCAATGGCCGAAGACGGAGCGGTCACAGTGTACGGTGGCAGCGCCATTA
CTGACGCCAAGAAGAACCCGTTTTCGATCAAAGCCGGCCTTGCCCAAATG
CTACGTGGCGGGGCCATTGTTGAAGTCTCCAGTGTGGAACAAGCCAAGAT
CGCCGAAGCAGCTGGCGCCTGTTCTATCATGGTATCCGAGCCCAGCCGGC
CCGGCATTAAGCGCATGCCGGATCCTTCTCTCGTTAAAAGCGTTAAACGC
GCCGTTTCAGTCCCCGTTATGTCACGTGTTCGTGTTGGGCATTTTGTTGA
AGCGCAGATTCTTGAAAGTATTGGGCTCGATTACATTGACGAGAGTGAGG
TTTTAGGATTAGCTGATGAATATAATTTTATTAACAAACATAACTTTAGG
TTCCCGTTTGTGTGTGGTTGTAGGAATCTTGGTGAAGCTTTGAGGAGAAT
TAGAGAAGGAGCTGCTATGATAAGAATACAAGGGGATTTGTTAAATTCTG
GTAATATTGTCGAGACTGTTAAAAATGTGAGGTCGTTAATGGGAGATATT
CGAATTTTGAATAACATGGATGAAGATGAGGTCTTCGCGTTTGCTAAGAA
GATAGCGGCTCCTTATGATTTGGTGGCTCAAACTAAACAAA
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