FC877876

Overview
NameFC877876
Unique NameFC877876
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length841
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11861 contig Ccv1_Contig11861:34..875. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC877876 vs. ExPASy Swiss-Prot
Match: PDXS_CLOCE (Pyridoxal biosynthesis lyase pdxS OS=Clostridium cellulolyticum (strain ATCC 35319 / DSM 5812 / JCM 6584 / H10) GN=pdxS PE=3 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 3.068e-48
Identity = 95/191 (49.74%), Postives = 140/191 (73.30%), Query Frame = 1
Query:  271 FSIKAGLAQMLRGGAIVEVSSVEQAKIAEAAGACSIMVSE--PS----RPGIKRMPDPSLVKSVKRAVSVPVMSRVRVGHFVEAQILESIGLDYIDESEVLGLADEYNFINKHNFRFPFVCGCRNLGEALRRIREGAAMIRIQGDLLNSGNIVETVKNVRSLMGDIRILNNMDEDEVFAFAKKIAAPYDLV 825
            + +   LAQML+GG I++V + ++A+IA+ AGA ++M  E  PS      G+ RM DP ++K ++ AVS+PVM++VR+GHFVEAQ+LE++ +DYIDESEVL  ADE   I+KH F+ PFVCG +NLGEALRRI EGA+MIR +G+   +GN+VE V+++R++  +IR + +  + E+   AK+  APYDL+
Sbjct:    5 YQLNKNLAQMLKGGVIMDVVNAKEAEIAQKAGAVAVMALERVPSDIRKAGGVARMSDPKMIKDIQSAVSIPVMAKVRIGHFVEAQVLEALSIDYIDESEVLTPADEEFHIDKHTFKVPFVCGAKNLGEALRRISEGASMIRTKGE-AGTGNVVEAVRHMRTVTNEIRKVQSASKQELMTIAKEFGAPYDLI 194          
BLAST of FC877876 vs. ExPASy Swiss-Prot
Match: PDXS_GEOTN (Pyridoxal biosynthesis lyase pdxS OS=Geobacillus thermodenitrificans (strain NG80-2) GN=pdxS PE=3 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 4.007e-48
Identity = 98/194 (50.52%), Postives = 143/194 (73.71%), Query Frame = 1
Query:  277 IKAGLAQMLRGGAIVEVSSVEQAKIAEAAGACSIMVSEP------SRPGIKRMPDPSLVKSVKRAVSVPVMSRVRVGHFVEAQILESIGLDYIDESEVLGLADEYNFINKHNFRFPFVCGCRNLGEALRRIREGAAMIRIQGDLLNSGNIVETVKNVRSLMGDIRILNNMDEDEVFAFAKKIAAPYDLVAQTKQ 840
            +K G+A+M +GG I++V + EQAKIAEAAGA ++M  E       +  G+ RM DP++V+ V  AVS+PVM++VR+GH+VEA++LE++G+DYIDESEVL  ADE   I+K  F  PFVCGCR+LGEA RRI EGA+M+R +G+   +GNIVE V+++R +   IR + +M EDE+ A AK++ AP +++ + K+
Sbjct:    9 VKRGMAEMQKGGVIMDVVNAEQAKIAEAAGAVAVMALERVPADIRAAGGVARMADPTVVEEVMNAVSIPVMAKVRIGHYVEARVLEALGVDYIDESEVLTPADEEFHIDKRQFTVPFVCGCRDLGEAARRIAEGASMLRTKGE-PGTGNIVEAVRHMRKVNAQIRKVVSMSEDELVAEAKQLGAPVEVLREIKR 201          
BLAST of FC877876 vs. ExPASy Swiss-Prot
Match: PDXS_MYCS2 (Pyridoxal biosynthesis lyase pdxS OS=Mycobacterium smegmatis GN=pdxS PE=3 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 5.234e-48
Identity = 96/191 (50.26%), Postives = 139/191 (72.77%), Query Frame = 1
Query:  277 IKAGLAQMLRGGAIVEVSSVEQAKIAEAAGACSIMVSEP------SRPGIKRMPDPSLVKSVKRAVSVPVMSRVRVGHFVEAQILESIGLDYIDESEVLGLADEYNFINKHNFRFPFVCGCRNLGEALRRIREGAAMIRIQGDLLNSGNIVETVKNVRSLMGDIRILNNMDEDEVFAFAKKIAAPYDLVAQ 831
            +K G+A+ML+GG I++V + EQA+IAEAAGA ++M  E       ++ G+ RM DP +++ +  AV++PVM++ R+GHFVEAQIL+S+G+DY+DESEVL  AD  N I+K  F  PFVCG  NLGEALRRI EGAAMIR +G+   +G++     ++R + G+IR L +M EDE++  AK++ APY+LV +
Sbjct:   18 VKRGMAEMLKGGVIMDVVTPEQARIAEAAGAVAVMALERVPADIRAQGGVSRMSDPDMIEGIIDAVTIPVMAKARIGHFVEAQILQSLGVDYVDESEVLTPADYTNHIDKWKFTVPFVCGATNLGEALRRITEGAAMIRSKGE-AGTGDVSNATTHMRKIGGEIRRLTSMSEDELYVAAKELQAPYELVVE 207          
BLAST of FC877876 vs. ExPASy Swiss-Prot
Match: PDXS_BACHD (Pyridoxal biosynthesis lyase pdxS OS=Bacillus halodurans GN=pdxS PE=3 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 5.234e-48
Identity = 98/194 (50.52%), Postives = 138/194 (71.13%), Query Frame = 1
Query:  277 IKAGLAQMLRGGAIVEVSSVEQAKIAEAAGACSIMVSEP------SRPGIKRMPDPSLVKSVKRAVSVPVMSRVRVGHFVEAQILESIGLDYIDESEVLGLADEYNFINKHNFRFPFVCGCRNLGEALRRIREGAAMIRIQGDLLNSGNIVETVKNVRSLMGDIRILNNMDEDEVFAFAKKIAAPYDLVAQTKQ 840
            +K G+A+M +GG I++V + EQAKIAE AGA ++M  E       +  G+ RM DP++V+ V  AVS+PVM++ R+GH VEA++LE++G+DYIDESEVL  ADE   +NK +F  PFVCG R+LGEA RRI EGA+MIR +G+   +GNIVE V+++R +   IR ++NM  DE+   AK I APY+L+   K+
Sbjct:    9 VKRGMAEMQKGGVIMDVVNAEQAKIAEEAGAVAVMALERVPADIRAAGGVARMADPTIVEEVMNAVSIPVMAKCRIGHIVEARVLEALGVDYIDESEVLTPADEVYHLNKRDFTVPFVCGARDLGEAARRIGEGASMIRTKGE-PGTGNIVEAVRHMRMMQAQIRKVSNMSTDELMTEAKNIGAPYELLLSIKE 201          
BLAST of FC877876 vs. ExPASy Swiss-Prot
Match: PDXS_STRZT (Pyridoxal biosynthesis lyase pdxS OS=Streptococcus pneumoniae (strain Taiwan19F-14) GN=pdxS PE=3 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 8.927e-48
Identity = 96/194 (49.48%), Postives = 141/194 (72.68%), Query Frame = 1
Query:  262 KNPFSIKAGLAQMLRGGAIVEVSSVEQAKIAEAAGACSIMVSEP------SRPGIKRMPDPSLVKSVKRAVSVPVMSRVRVGHFVEAQILESIGLDYIDESEVLGLADEYNFINKHNFRFPFVCGCRNLGEALRRIREGAAMIRIQGDLLNSGNIVETVKNVRSLMGDIRILNNMDEDEVFAFAKKIAAPYDLV 825
            +N + +   LAQML+GG I++V + EQA+IAEAAGA ++M  E       +  G+ RM DP ++K ++ AVS+PVM++VR+GHFVEAQILE+I +DYIDESEVL  AD+   ++K  F+ PFVCG ++LGEALRRI EGA+MIR +G+   +G+IV+ V+++R +  +IR + N+ EDE++  AK +  P +LV
Sbjct:    3 ENRYELNKNLAQMLKGGVIMDVQNPEQARIAEAAGAAAVMALERIPADIRAAGGVSRMSDPKMIKEIQEAVSIPVMAKVRIGHFVEAQILEAIEIDYIDESEVLSPADDRFHVDKKEFQVPFVCGAKDLGEALRRIAEGASMIRTKGE-PGTGDIVQAVRHMRMMNQEIRRIQNLREDELYVAAKDLQVPVELV 195          
BLAST of FC877876 vs. ExPASy Swiss-Prot
Match: PDXS_STRZP (Pyridoxal biosynthesis lyase pdxS OS=Streptococcus pneumoniae (strain P1031) GN=pdxS PE=3 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 8.927e-48
Identity = 96/194 (49.48%), Postives = 141/194 (72.68%), Query Frame = 1
Query:  262 KNPFSIKAGLAQMLRGGAIVEVSSVEQAKIAEAAGACSIMVSEP------SRPGIKRMPDPSLVKSVKRAVSVPVMSRVRVGHFVEAQILESIGLDYIDESEVLGLADEYNFINKHNFRFPFVCGCRNLGEALRRIREGAAMIRIQGDLLNSGNIVETVKNVRSLMGDIRILNNMDEDEVFAFAKKIAAPYDLV 825
            +N + +   LAQML+GG I++V + EQA+IAEAAGA ++M  E       +  G+ RM DP ++K ++ AVS+PVM++VR+GHFVEAQILE+I +DYIDESEVL  AD+   ++K  F+ PFVCG ++LGEALRRI EGA+MIR +G+   +G+IV+ V+++R +  +IR + N+ EDE++  AK +  P +LV
Sbjct:    3 ENRYELNKNLAQMLKGGVIMDVQNPEQARIAEAAGAAAVMALERIPADIRAAGGVSRMSDPKMIKEIQEAVSIPVMAKVRIGHFVEAQILEAIEIDYIDESEVLSPADDRFHVDKKEFQVPFVCGAKDLGEALRRIAEGASMIRTKGE-PGTGDIVQAVRHMRMMNQEIRRIQNLREDELYVAAKDLQVPVELV 195          
BLAST of FC877876 vs. ExPASy Swiss-Prot
Match: PDXS_STRZJ (Pyridoxal biosynthesis lyase pdxS OS=Streptococcus pneumoniae (strain JJA) GN=pdxS PE=3 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 8.927e-48
Identity = 96/194 (49.48%), Postives = 141/194 (72.68%), Query Frame = 1
Query:  262 KNPFSIKAGLAQMLRGGAIVEVSSVEQAKIAEAAGACSIMVSEP------SRPGIKRMPDPSLVKSVKRAVSVPVMSRVRVGHFVEAQILESIGLDYIDESEVLGLADEYNFINKHNFRFPFVCGCRNLGEALRRIREGAAMIRIQGDLLNSGNIVETVKNVRSLMGDIRILNNMDEDEVFAFAKKIAAPYDLV 825
            +N + +   LAQML+GG I++V + EQA+IAEAAGA ++M  E       +  G+ RM DP ++K ++ AVS+PVM++VR+GHFVEAQILE+I +DYIDESEVL  AD+   ++K  F+ PFVCG ++LGEALRRI EGA+MIR +G+   +G+IV+ V+++R +  +IR + N+ EDE++  AK +  P +LV
Sbjct:    3 ENRYELNKNLAQMLKGGVIMDVQNPEQARIAEAAGAAAVMALERIPADIRAAGGVSRMSDPKMIKEIQEAVSIPVMAKVRIGHFVEAQILEAIEIDYIDESEVLSPADDRFHVDKKEFQVPFVCGAKDLGEALRRIAEGASMIRTKGE-PGTGDIVQAVRHMRMMNQEIRRIQNLREDELYVAAKDLQVPVELV 195          
BLAST of FC877876 vs. ExPASy Swiss-Prot
Match: PDXS_STRR6 (Pyridoxal biosynthesis lyase pdxS OS=Streptococcus pneumoniae (strain ATCC BAA-255 / R6) GN=pdxS PE=3 SV=2)

HSP 1 Score: 190.66 bits (483), Expect = 8.927e-48
Identity = 96/194 (49.48%), Postives = 141/194 (72.68%), Query Frame = 1
Query:  262 KNPFSIKAGLAQMLRGGAIVEVSSVEQAKIAEAAGACSIMVSEP------SRPGIKRMPDPSLVKSVKRAVSVPVMSRVRVGHFVEAQILESIGLDYIDESEVLGLADEYNFINKHNFRFPFVCGCRNLGEALRRIREGAAMIRIQGDLLNSGNIVETVKNVRSLMGDIRILNNMDEDEVFAFAKKIAAPYDLV 825
            +N + +   LAQML+GG I++V + EQA+IAEAAGA ++M  E       +  G+ RM DP ++K ++ AVS+PVM++VR+GHFVEAQILE+I +DYIDESEVL  AD+   ++K  F+ PFVCG ++LGEALRRI EGA+MIR +G+   +G+IV+ V+++R +  +IR + N+ EDE++  AK +  P +LV
Sbjct:    3 ENRYELNKNLAQMLKGGVIMDVQNPEQARIAEAAGAAAVMALERIPADIRAAGGVSRMSDPKMIKEIQEAVSIPVMAKVRIGHFVEAQILEAIEIDYIDESEVLSPADDRFHVDKKEFQVPFVCGAKDLGEALRRIAEGASMIRTKGE-PGTGDIVQAVRHMRMMNQEIRRIQNLREDELYVAAKDLQVPVELV 195          
BLAST of FC877876 vs. ExPASy Swiss-Prot
Match: PDXS_STRPN (Pyridoxal biosynthesis lyase pdxS OS=Streptococcus pneumoniae GN=pdxS PE=3 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 8.927e-48
Identity = 96/194 (49.48%), Postives = 141/194 (72.68%), Query Frame = 1
Query:  262 KNPFSIKAGLAQMLRGGAIVEVSSVEQAKIAEAAGACSIMVSEP------SRPGIKRMPDPSLVKSVKRAVSVPVMSRVRVGHFVEAQILESIGLDYIDESEVLGLADEYNFINKHNFRFPFVCGCRNLGEALRRIREGAAMIRIQGDLLNSGNIVETVKNVRSLMGDIRILNNMDEDEVFAFAKKIAAPYDLV 825
            +N + +   LAQML+GG I++V + EQA+IAEAAGA ++M  E       +  G+ RM DP ++K ++ AVS+PVM++VR+GHFVEAQILE+I +DYIDESEVL  AD+   ++K  F+ PFVCG ++LGEALRRI EGA+MIR +G+   +G+IV+ V+++R +  +IR + N+ EDE++  AK +  P +LV
Sbjct:    3 ENRYELNKNLAQMLKGGVIMDVQNPEQARIAEAAGAAAVMALERIPADIRAAGGVSRMSDPKMIKEIQEAVSIPVMAKVRIGHFVEAQILEAIEIDYIDESEVLSPADDRFHVDKKEFQVPFVCGAKDLGEALRRIAEGASMIRTKGE-PGTGDIVQAVRHMRMMNQEIRRIQNLREDELYVAAKDLQVPVELV 195          
BLAST of FC877876 vs. ExPASy Swiss-Prot
Match: PDXS_STRPJ (Pyridoxal biosynthesis lyase pdxS OS=Streptococcus pneumoniae (strain ATCC 700669 / Spain 23F-1) GN=pdxS PE=3 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 8.927e-48
Identity = 96/194 (49.48%), Postives = 141/194 (72.68%), Query Frame = 1
Query:  262 KNPFSIKAGLAQMLRGGAIVEVSSVEQAKIAEAAGACSIMVSEP------SRPGIKRMPDPSLVKSVKRAVSVPVMSRVRVGHFVEAQILESIGLDYIDESEVLGLADEYNFINKHNFRFPFVCGCRNLGEALRRIREGAAMIRIQGDLLNSGNIVETVKNVRSLMGDIRILNNMDEDEVFAFAKKIAAPYDLV 825
            +N + +   LAQML+GG I++V + EQA+IAEAAGA ++M  E       +  G+ RM DP ++K ++ AVS+PVM++VR+GHFVEAQILE+I +DYIDESEVL  AD+   ++K  F+ PFVCG ++LGEALRRI EGA+MIR +G+   +G+IV+ V+++R +  +IR + N+ EDE++  AK +  P +LV
Sbjct:    3 ENRYELNKNLAQMLKGGVIMDVQNPEQARIAEAAGAAAVMALERIPADIRAAGGVSRMSDPKMIKEIQEAVSIPVMAKVRIGHFVEAQILEAIEIDYIDESEVLSPADDRFHVDKKEFQVPFVCGAKDLGEALRRIAEGASMIRTKGE-PGTGDIVQAVRHMRMMNQEIRRIQNLREDELYVAAKDLQVPVELV 195          
The following BLAST results are available for this feature:
BLAST of FC877876 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 208
Match NameE-valueIdentityDescription
PDXS_CLOCE3.068e-4849.74Pyridoxal biosynthesis lyase pdxS OS=Clostridium c... [more]
PDXS_GEOTN4.007e-4850.52Pyridoxal biosynthesis lyase pdxS OS=Geobacillus t... [more]
PDXS_MYCS25.234e-4850.26Pyridoxal biosynthesis lyase pdxS OS=Mycobacterium... [more]
PDXS_BACHD5.234e-4850.52Pyridoxal biosynthesis lyase pdxS OS=Bacillus halo... [more]
PDXS_STRZT8.927e-4849.48Pyridoxal biosynthesis lyase pdxS OS=Streptococcus... [more]
PDXS_STRZP8.927e-4849.48Pyridoxal biosynthesis lyase pdxS OS=Streptococcus... [more]
PDXS_STRZJ8.927e-4849.48Pyridoxal biosynthesis lyase pdxS OS=Streptococcus... [more]
PDXS_STRR68.927e-4849.48Pyridoxal biosynthesis lyase pdxS OS=Streptococcus... [more]
PDXS_STRPN8.927e-4849.48Pyridoxal biosynthesis lyase pdxS OS=Streptococcus... [more]
PDXS_STRPJ8.927e-4849.48Pyridoxal biosynthesis lyase pdxS OS=Streptococcus... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA94CE03RM1 IVIA1 Citrus clementina cDNA clone IC0AAA94CE03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877876 ID=FC877876; Name=FC877876; organism=Citrus clementina; type=EST; length=841bp
TCGAAATTTCTACACTAATCAATCAATTCCCCACCGACTAACCCCACCTT
CGAAGCTCTTCAGAACCTTCTCGAACTCGCCCCAATCCTCACCCTCCCTT
CAATTTTATAAACCCTTTCTACAAAAAGAAACCCAGTACTCGATCAAACG
ATTCAATAACTACGCTTCTCGCATCAGTGAGACATTTTTACAAACGCCTT
TGCAATGGCCGAAGACGGAGCGGTCACAGTGTACGGTGGCAGCGCCATTA
CTGACGCCAAGAAGAACCCGTTTTCGATCAAAGCCGGCCTTGCCCAAATG
CTACGTGGCGGGGCCATTGTTGAAGTCTCCAGTGTGGAACAAGCCAAGAT
CGCCGAAGCAGCTGGCGCCTGTTCTATCATGGTATCCGAGCCCAGCCGGC
CCGGCATTAAGCGCATGCCGGATCCTTCTCTCGTTAAAAGCGTTAAACGC
GCCGTTTCAGTCCCCGTTATGTCACGTGTTCGTGTTGGGCATTTTGTTGA
AGCGCAGATTCTTGAAAGTATTGGGCTCGATTACATTGACGAGAGTGAGG
TTTTAGGATTAGCTGATGAATATAATTTTATTAACAAACATAACTTTAGG
TTCCCGTTTGTGTGTGGTTGTAGGAATCTTGGTGAAGCTTTGAGGAGAAT
TAGAGAAGGAGCTGCTATGATAAGAATACAAGGGGATTTGTTAAATTCTG
GTAATATTGTCGAGACTGTTAAAAATGTGAGGTCGTTAATGGGAGATATT
CGAATTTTGAATAACATGGATGAAGATGAGGTCTTCGCGTTTGCTAAGAA
GATAGCGGCTCCTTATGATTTGGTGGCTCAAACTAAACAAA
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