FC877876

Overview
NameFC877876
Unique NameFC877876
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length841
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11861 contig Ccv1_Contig11861:34..875. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC877876 vs. ExPASy Swiss-Prot
Match: PDXS_STRPI (Pyridoxal biosynthesis lyase pdxS OS=Streptococcus pneumoniae (strain Hungary19A-6) GN=pdxS PE=3 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 8.927e-48
Identity = 96/194 (49.48%), Postives = 141/194 (72.68%), Query Frame = 1
Query:  262 KNPFSIKAGLAQMLRGGAIVEVSSVEQAKIAEAAGACSIMVSEP------SRPGIKRMPDPSLVKSVKRAVSVPVMSRVRVGHFVEAQILESIGLDYIDESEVLGLADEYNFINKHNFRFPFVCGCRNLGEALRRIREGAAMIRIQGDLLNSGNIVETVKNVRSLMGDIRILNNMDEDEVFAFAKKIAAPYDLV 825
            +N + +   LAQML+GG I++V + EQA+IAEAAGA ++M  E       +  G+ RM DP ++K ++ AVS+PVM++VR+GHFVEAQILE+I +DYIDESEVL  AD+   ++K  F+ PFVCG ++LGEALRRI EGA+MIR +G+   +G+IV+ V+++R +  +IR + N+ EDE++  AK +  P +LV
Sbjct:    3 ENRYELNKNLAQMLKGGVIMDVQNPEQARIAEAAGAAAVMALERIPADIRAAGGVSRMSDPKMIKEIQEAVSIPVMAKVRIGHFVEAQILEAIEIDYIDESEVLSPADDRFHVDKKEFQVPFVCGAKDLGEALRRIAEGASMIRTKGE-PGTGDIVQAVRHMRMMNQEIRRIQNLREDELYVAAKDLQVPVELV 195          
BLAST of FC877876 vs. ExPASy Swiss-Prot
Match: PDXS_STRP7 (Pyridoxal biosynthesis lyase pdxS OS=Streptococcus pneumoniae (strain 70585) GN=pdxS PE=3 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 8.927e-48
Identity = 96/194 (49.48%), Postives = 141/194 (72.68%), Query Frame = 1
Query:  262 KNPFSIKAGLAQMLRGGAIVEVSSVEQAKIAEAAGACSIMVSEP------SRPGIKRMPDPSLVKSVKRAVSVPVMSRVRVGHFVEAQILESIGLDYIDESEVLGLADEYNFINKHNFRFPFVCGCRNLGEALRRIREGAAMIRIQGDLLNSGNIVETVKNVRSLMGDIRILNNMDEDEVFAFAKKIAAPYDLV 825
            +N + +   LAQML+GG I++V + EQA+IAEAAGA ++M  E       +  G+ RM DP ++K ++ AVS+PVM++VR+GHFVEAQILE+I +DYIDESEVL  AD+   ++K  F+ PFVCG ++LGEALRRI EGA+MIR +G+   +G+IV+ V+++R +  +IR + N+ EDE++  AK +  P +LV
Sbjct:    3 ENRYELNKNLAQMLKGGVIMDVQNPEQARIAEAAGAAAVMALERIPADIRAAGGVSRMSDPKMIKEIQEAVSIPVMAKVRIGHFVEAQILEAIEIDYIDESEVLSPADDRFHVDKKEFQVPFVCGAKDLGEALRRIAEGASMIRTKGE-PGTGDIVQAVRHMRMMNQEIRRIQNLREDELYVAAKDLQVPVELV 195          
BLAST of FC877876 vs. ExPASy Swiss-Prot
Match: PDXS_STRP4 (Pyridoxal biosynthesis lyase pdxS OS=Streptococcus pneumoniae serotype 19F (strain G54) GN=pdxS PE=3 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 8.927e-48
Identity = 96/194 (49.48%), Postives = 141/194 (72.68%), Query Frame = 1
Query:  262 KNPFSIKAGLAQMLRGGAIVEVSSVEQAKIAEAAGACSIMVSEP------SRPGIKRMPDPSLVKSVKRAVSVPVMSRVRVGHFVEAQILESIGLDYIDESEVLGLADEYNFINKHNFRFPFVCGCRNLGEALRRIREGAAMIRIQGDLLNSGNIVETVKNVRSLMGDIRILNNMDEDEVFAFAKKIAAPYDLV 825
            +N + +   LAQML+GG I++V + EQA+IAEAAGA ++M  E       +  G+ RM DP ++K ++ AVS+PVM++VR+GHFVEAQILE+I +DYIDESEVL  AD+   ++K  F+ PFVCG ++LGEALRRI EGA+MIR +G+   +G+IV+ V+++R +  +IR + N+ EDE++  AK +  P +LV
Sbjct:    3 ENRYELNKNLAQMLKGGVIMDVQNPEQARIAEAAGAAAVMALERIPADIRAAGGVSRMSDPKMIKEIQEAVSIPVMAKVRIGHFVEAQILEAIEIDYIDESEVLSPADDRFHVDKKEFQVPFVCGAKDLGEALRRIAEGASMIRTKGE-PGTGDIVQAVRHMRMMNQEIRRIQNLREDELYVAAKDLQVPVELV 195          
BLAST of FC877876 vs. ExPASy Swiss-Prot
Match: PDXS_STRP2 (Pyridoxal biosynthesis lyase pdxS OS=Streptococcus pneumoniae serotype 2 (strain D39 / NCTC 7466) GN=pdxS PE=3 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 8.927e-48
Identity = 96/194 (49.48%), Postives = 141/194 (72.68%), Query Frame = 1
Query:  262 KNPFSIKAGLAQMLRGGAIVEVSSVEQAKIAEAAGACSIMVSEP------SRPGIKRMPDPSLVKSVKRAVSVPVMSRVRVGHFVEAQILESIGLDYIDESEVLGLADEYNFINKHNFRFPFVCGCRNLGEALRRIREGAAMIRIQGDLLNSGNIVETVKNVRSLMGDIRILNNMDEDEVFAFAKKIAAPYDLV 825
            +N + +   LAQML+GG I++V + EQA+IAEAAGA ++M  E       +  G+ RM DP ++K ++ AVS+PVM++VR+GHFVEAQILE+I +DYIDESEVL  AD+   ++K  F+ PFVCG ++LGEALRRI EGA+MIR +G+   +G+IV+ V+++R +  +IR + N+ EDE++  AK +  P +LV
Sbjct:    3 ENRYELNKNLAQMLKGGVIMDVQNPEQARIAEAAGAAAVMALERIPADIRAAGGVSRMSDPKMIKEIQEAVSIPVMAKVRIGHFVEAQILEAIEIDYIDESEVLSPADDRFHVDKKEFQVPFVCGAKDLGEALRRIAEGASMIRTKGE-PGTGDIVQAVRHMRMMNQEIRRIQNLREDELYVAAKDLQVPVELV 195          
BLAST of FC877876 vs. ExPASy Swiss-Prot
Match: PDXS_BACAN (Pyridoxal biosynthesis lyase pdxS OS=Bacillus anthracis GN=pdxS PE=3 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 8.927e-48
Identity = 95/194 (48.97%), Postives = 141/194 (72.68%), Query Frame = 1
Query:  277 IKAGLAQMLRGGAIVEVSSVEQAKIAEAAGACSIMVSEP------SRPGIKRMPDPSLVKSVKRAVSVPVMSRVRVGHFVEAQILESIGLDYIDESEVLGLADEYNFINKHNFRFPFVCGCRNLGEALRRIREGAAMIRIQGDLLNSGNIVETVKNVRSLMGDIRILNNMDEDEVFAFAKKIAAPYDLVAQTKQ 840
            +K G+A+M +GG I++V + EQAKIAE AGA +IM  E       +  G+ RM DP++V+ V  AVS+PVM++ R+GH VEA++LES+G+DYIDESEVL  ADE   +NK ++  PFVCGCR++GEA RRI EGA+M+R +G+   +GNIVE V+++R +  +IR + ++ EDE+  +AK   APY+++ + K+
Sbjct:   10 VKRGMAEMQKGGVIMDVINAEQAKIAEEAGAVAIMALERVPADIRAAGGVSRMADPTIVEEVMGAVSIPVMAKCRIGHLVEARVLESLGVDYIDESEVLTPADEVYHLNKRDYTVPFVCGCRDIGEAARRIAEGASMLRTKGE-PGTGNIVEAVRHMRQVNAEIRQVASLREDELMTYAKNTGAPYEVLLEIKR 202          
BLAST of FC877876 vs. ExPASy Swiss-Prot
Match: PDXS_BACAC (Pyridoxal biosynthesis lyase pdxS OS=Bacillus anthracis (strain CDC 684 / NRRL 3495) GN=pdxS PE=3 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 8.927e-48
Identity = 95/194 (48.97%), Postives = 141/194 (72.68%), Query Frame = 1
Query:  277 IKAGLAQMLRGGAIVEVSSVEQAKIAEAAGACSIMVSEP------SRPGIKRMPDPSLVKSVKRAVSVPVMSRVRVGHFVEAQILESIGLDYIDESEVLGLADEYNFINKHNFRFPFVCGCRNLGEALRRIREGAAMIRIQGDLLNSGNIVETVKNVRSLMGDIRILNNMDEDEVFAFAKKIAAPYDLVAQTKQ 840
            +K G+A+M +GG I++V + EQAKIAE AGA +IM  E       +  G+ RM DP++V+ V  AVS+PVM++ R+GH VEA++LES+G+DYIDESEVL  ADE   +NK ++  PFVCGCR++GEA RRI EGA+M+R +G+   +GNIVE V+++R +  +IR + ++ EDE+  +AK   APY+++ + K+
Sbjct:   10 VKRGMAEMQKGGVIMDVINAEQAKIAEEAGAVAIMALERVPADIRAAGGVSRMADPTIVEEVMGAVSIPVMAKCRIGHLVEARVLESLGVDYIDESEVLTPADEVYHLNKRDYTVPFVCGCRDIGEAARRIAEGASMLRTKGE-PGTGNIVEAVRHMRQVNAEIRQVASLREDELMTYAKNTGAPYEVLLEIKR 202          
BLAST of FC877876 vs. ExPASy Swiss-Prot
Match: PDXS_BACAA (Pyridoxal biosynthesis lyase pdxS OS=Bacillus anthracis (strain A0248) GN=pdxS PE=3 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 8.927e-48
Identity = 95/194 (48.97%), Postives = 141/194 (72.68%), Query Frame = 1
Query:  277 IKAGLAQMLRGGAIVEVSSVEQAKIAEAAGACSIMVSEP------SRPGIKRMPDPSLVKSVKRAVSVPVMSRVRVGHFVEAQILESIGLDYIDESEVLGLADEYNFINKHNFRFPFVCGCRNLGEALRRIREGAAMIRIQGDLLNSGNIVETVKNVRSLMGDIRILNNMDEDEVFAFAKKIAAPYDLVAQTKQ 840
            +K G+A+M +GG I++V + EQAKIAE AGA +IM  E       +  G+ RM DP++V+ V  AVS+PVM++ R+GH VEA++LES+G+DYIDESEVL  ADE   +NK ++  PFVCGCR++GEA RRI EGA+M+R +G+   +GNIVE V+++R +  +IR + ++ EDE+  +AK   APY+++ + K+
Sbjct:   10 VKRGMAEMQKGGVIMDVINAEQAKIAEEAGAVAIMALERVPADIRAAGGVSRMADPTIVEEVMGAVSIPVMAKCRIGHLVEARVLESLGVDYIDESEVLTPADEVYHLNKRDYTVPFVCGCRDIGEAARRIAEGASMLRTKGE-PGTGNIVEAVRHMRQVNAEIRQVASLREDELMTYAKNTGAPYEVLLEIKR 202          
BLAST of FC877876 vs. ExPASy Swiss-Prot
Match: PDXS_STAES (Pyridoxal biosynthesis lyase pdxS OS=Staphylococcus epidermidis (strain ATCC 12228) GN=pdxS PE=3 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 1.166e-47
Identity = 98/193 (50.78%), Postives = 137/193 (70.98%), Query Frame = 1
Query:  277 IKAGLAQMLRGGAIVEVSSVEQAKIAEAAGACSIMVSE--PS----RPGIKRMPDPSLVKSVKRAVSVPVMSRVRVGHFVEAQILESIGLDYIDESEVLGLADEYNFINKHNFRFPFVCGCRNLGEALRRIREGAAMIRIQGDLLNSGNIVETVKNVRSLMGDIRILNNMDEDEVFAFAKKIAAPYDLVAQTK 837
            +K G+A+M +GG I++V + EQAKIAE AGA ++M  E  PS      G+ RM +P +V+ V  AVS+PVM++ R+GH  EA++LES+G+DYIDESEVL  ADE   + K  F  PFVCGCRNLGEA RRI EGAAM+R +G+   +GNIVE V+++R +  ++  L  M++DE+  FAK + APY+++ Q K
Sbjct:   10 VKRGMAEMQKGGVIMDVVNAEQAKIAEEAGAVAVMALERVPSDIRAAGGVARMANPKIVEEVMNAVSIPVMAKARIGHITEARVLESMGVDYIDESEVLTPADEEYHLRKDQFTVPFVCGCRNLGEAARRIGEGAAMLRTKGE-PGTGNIVEAVRHMRRVNSEVSRLTVMNDDEIMTFAKDLGAPYEVLKQIK 201          
BLAST of FC877876 vs. ExPASy Swiss-Prot
Match: PDXS_STAEQ (Pyridoxal biosynthesis lyase pdxS OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=pdxS PE=3 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 1.166e-47
Identity = 98/193 (50.78%), Postives = 137/193 (70.98%), Query Frame = 1
Query:  277 IKAGLAQMLRGGAIVEVSSVEQAKIAEAAGACSIMVSE--PS----RPGIKRMPDPSLVKSVKRAVSVPVMSRVRVGHFVEAQILESIGLDYIDESEVLGLADEYNFINKHNFRFPFVCGCRNLGEALRRIREGAAMIRIQGDLLNSGNIVETVKNVRSLMGDIRILNNMDEDEVFAFAKKIAAPYDLVAQTK 837
            +K G+A+M +GG I++V + EQAKIAE AGA ++M  E  PS      G+ RM +P +V+ V  AVS+PVM++ R+GH  EA++LES+G+DYIDESEVL  ADE   + K  F  PFVCGCRNLGEA RRI EGAAM+R +G+   +GNIVE V+++R +  ++  L  M++DE+  FAK + APY+++ Q K
Sbjct:   10 VKRGMAEMQKGGVIMDVVNAEQAKIAEEAGAVAVMALERVPSDIRAAGGVARMANPKIVEEVMNAVSIPVMAKARIGHITEARVLESMGVDYIDESEVLTPADEEYHLRKDQFTVPFVCGCRNLGEAARRIGEGAAMLRTKGE-PGTGNIVEAVRHMRRVNSEVSRLTVMNDDEIMTFAKDLGAPYEVLKQIK 201          
BLAST of FC877876 vs. ExPASy Swiss-Prot
Match: PDXS_DEIRA (Pyridoxal biosynthesis lyase pdxS OS=Deinococcus radiodurans GN=pdxS PE=3 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 1.166e-47
Identity = 95/199 (47.74%), Postives = 141/199 (70.85%), Query Frame = 1
Query:  247 ITDAKKNPFSIKAGLAQMLRGGAIVEVSSVEQAKIAEAAGACSIMVSEP------SRPGIKRMPDPSLVKSVKRAVSVPVMSRVRVGHFVEAQILESIGLDYIDESEVLGLADEYNFINKHNFRFPFVCGCRNLGEALRRIREGAAMIRIQGDLLNSGNIVETVKNVRSLMGDIRILNNMDEDEVFAFAKKIAAPYDLV 825
            +T+ +     +K G A+M +GG I++V + +QA+IAEAAGA ++M  E          G+ RM DP +++ +  AVS+PVM++VR+GH VEAQIL++IG+D+IDESEVL  ADE   I K +F+ PFVCG +NLGEALRR+ EGA+MIR +G+   +GN+VE V++ R+++GDIR + +   +E+   A+ + APYDLV
Sbjct:   12 MTEQQTGTPQLKQGFAEMFKGGVIMDVVTADQARIAEAAGATAVMALERVPADIRKDGGVARMSDPKMIREIMAAVSIPVMAKVRIGHVVEAQILQAIGVDFIDESEVLTPADEQFHILKRDFKVPFVCGAKNLGEALRRVGEGASMIRTKGE-AGTGNVVEAVRHARAVLGDIRAVQSRPAEELMTVARDLQAPYDLV 209          
The following BLAST results are available for this feature:
BLAST of FC877876 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 208
Match NameE-valueIdentityDescription
PDXS_STRPI8.927e-4849.48Pyridoxal biosynthesis lyase pdxS OS=Streptococcus... [more]
PDXS_STRP78.927e-4849.48Pyridoxal biosynthesis lyase pdxS OS=Streptococcus... [more]
PDXS_STRP48.927e-4849.48Pyridoxal biosynthesis lyase pdxS OS=Streptococcus... [more]
PDXS_STRP28.927e-4849.48Pyridoxal biosynthesis lyase pdxS OS=Streptococcus... [more]
PDXS_BACAN8.927e-4848.97Pyridoxal biosynthesis lyase pdxS OS=Bacillus anth... [more]
PDXS_BACAC8.927e-4848.97Pyridoxal biosynthesis lyase pdxS OS=Bacillus anth... [more]
PDXS_BACAA8.927e-4848.97Pyridoxal biosynthesis lyase pdxS OS=Bacillus anth... [more]
PDXS_STAES1.166e-4750.78Pyridoxal biosynthesis lyase pdxS OS=Staphylococcu... [more]
PDXS_STAEQ1.166e-4750.78Pyridoxal biosynthesis lyase pdxS OS=Staphylococcu... [more]
PDXS_DEIRA1.166e-4747.74Pyridoxal biosynthesis lyase pdxS OS=Deinococcus r... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA94CE03RM1 IVIA1 Citrus clementina cDNA clone IC0AAA94CE03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877876 ID=FC877876; Name=FC877876; organism=Citrus clementina; type=EST; length=841bp
TCGAAATTTCTACACTAATCAATCAATTCCCCACCGACTAACCCCACCTT
CGAAGCTCTTCAGAACCTTCTCGAACTCGCCCCAATCCTCACCCTCCCTT
CAATTTTATAAACCCTTTCTACAAAAAGAAACCCAGTACTCGATCAAACG
ATTCAATAACTACGCTTCTCGCATCAGTGAGACATTTTTACAAACGCCTT
TGCAATGGCCGAAGACGGAGCGGTCACAGTGTACGGTGGCAGCGCCATTA
CTGACGCCAAGAAGAACCCGTTTTCGATCAAAGCCGGCCTTGCCCAAATG
CTACGTGGCGGGGCCATTGTTGAAGTCTCCAGTGTGGAACAAGCCAAGAT
CGCCGAAGCAGCTGGCGCCTGTTCTATCATGGTATCCGAGCCCAGCCGGC
CCGGCATTAAGCGCATGCCGGATCCTTCTCTCGTTAAAAGCGTTAAACGC
GCCGTTTCAGTCCCCGTTATGTCACGTGTTCGTGTTGGGCATTTTGTTGA
AGCGCAGATTCTTGAAAGTATTGGGCTCGATTACATTGACGAGAGTGAGG
TTTTAGGATTAGCTGATGAATATAATTTTATTAACAAACATAACTTTAGG
TTCCCGTTTGTGTGTGGTTGTAGGAATCTTGGTGAAGCTTTGAGGAGAAT
TAGAGAAGGAGCTGCTATGATAAGAATACAAGGGGATTTGTTAAATTCTG
GTAATATTGTCGAGACTGTTAAAAATGTGAGGTCGTTAATGGGAGATATT
CGAATTTTGAATAACATGGATGAAGATGAGGTCTTCGCGTTTGCTAAGAA
GATAGCGGCTCCTTATGATTTGGTGGCTCAAACTAAACAAA
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