FC877876

Overview
NameFC877876
Unique NameFC877876
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length841
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11861 contig Ccv1_Contig11861:34..875. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC877876 vs. ExPASy Swiss-Prot
Match: PDXS_BACWK (Pyridoxal biosynthesis lyase pdxS OS=Bacillus weihenstephanensis (strain KBAB4) GN=pdxS PE=3 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 1.166e-47
Identity = 94/194 (48.45%), Postives = 141/194 (72.68%), Query Frame = 1 
Query:  277 IKAGLAQMLRGGAIVEVSSVEQAKIAEAAGACSIMVSEP------SRPGIKRMPDPSLVKSVKRAVSVPVMSRVRVGHFVEAQILESIGLDYIDESEVLGLADEYNFINKHNFRFPFVCGCRNLGEALRRIREGAAMIRIQGDLLNSGNIVETVKNVRSLMGDIRILNNMDEDEVFAFAKKIAAPYDLVAQTKQ 840
            +K G+A+M +GG I++V + EQA+IAE AGA ++M  E       +  G+ RM DP++V+ V  AVS+PVM++ R+GH VEA++LES+G+DYIDESEVL  ADE   +NK ++  PFVCGCR++GEA RRI EGAAM+R +G+   +GNIVE V+++R +  +IR + ++ EDE+  +AK   APY+++ + K+
Sbjct:   10 VKRGMAEMQKGGVIMDVVNAEQARIAEEAGAVAVMALERVPADIRAAGGVSRMADPTIVEEVMGAVSIPVMAKCRIGHLVEARVLESLGVDYIDESEVLTPADEVYHLNKRDYTVPFVCGCRDIGEAARRIAEGAAMLRTKGE-PGTGNIVEAVRHMRQVNAEIRQVASLREDELMTYAKNTGAPYEVLLEIKR 202
[Close]
BLAST of FC877876 vs. ExPASy Swiss-Prot
Match: PDXS_BACP2 (Pyridoxal biosynthesis lyase pdxS OS=Bacillus pumilus (strain SAFR-032) GN=pdxS PE=3 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 1.166e-47
Identity = 97/201 (48.26%), Postives = 141/201 (70.15%), Query Frame = 1 
Query:  256 AKKNPFSIKAGLAQMLRGGAIVEVSSVEQAKIAEAAGACSIMVSEP------SRPGIKRMPDPSLVKSVKRAVSVPVMSRVRVGHFVEAQILESIGLDYIDESEVLGLADEYNFINKHNFRFPFVCGCRNLGEALRRIREGAAMIRIQGDLLNSGNIVETVKNVRSLMGDIRILNNMDEDEVFAFAKKIAAPYDLVAQTKQ 840
            + K    +K G+A+M +GG I++V + EQAKIAE AGA ++M  E       +  G+ RM DP +V+ V+ AV++PVM++ R+GH VEA++LE++G+DYIDESEVL  ADE   +NK+ +  PFVCGCR+LGEA RRI EGA+M+R +G+   +GNIVE V+++R +   IR +  M EDE+   AK + APY+L+ Q K+
Sbjct:    2 SNKGTERVKRGMAEMQKGGVIMDVVNAEQAKIAEEAGAVAVMALERVPADIRAAGGVARMADPRIVEEVQNAVTIPVMAKARIGHIVEARVLEALGVDYIDESEVLTPADEEFHLNKNEYTVPFVCGCRDLGEATRRIAEGASMLRTKGE-PGTGNIVEAVRHMRKVNAQIRKVAAMSEDELMTEAKNLGAPYELLLQIKK 201
[Close]
BLAST of FC877876 vs. ExPASy Swiss-Prot
Match: PDXS_BACHK (Pyridoxal biosynthesis lyase pdxS OS=Bacillus thuringiensis subsp. konkukian GN=pdxS PE=3 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 1.166e-47
Identity = 94/194 (48.45%), Postives = 141/194 (72.68%), Query Frame = 1 
Query:  277 IKAGLAQMLRGGAIVEVSSVEQAKIAEAAGACSIMVSEP------SRPGIKRMPDPSLVKSVKRAVSVPVMSRVRVGHFVEAQILESIGLDYIDESEVLGLADEYNFINKHNFRFPFVCGCRNLGEALRRIREGAAMIRIQGDLLNSGNIVETVKNVRSLMGDIRILNNMDEDEVFAFAKKIAAPYDLVAQTKQ 840
            +K G+A+M +GG I++V + EQAKIAE AGA ++M  E       +  G+ RM DP++V+ V  AVS+PVM++ R+GH VEA++LES+G+DYIDESEVL  ADE   +NK ++  PFVCGCR++GEA RRI EGA+M+R +G+   +GNIVE V+++R +  +IR + ++ EDE+  +AK   APY+++ + K+
Sbjct:   10 VKRGMAEMQKGGVIMDVINAEQAKIAEEAGAVAVMALERVPADIRAAGGVSRMADPTIVEEVMGAVSIPVMAKCRIGHLVEARVLESLGVDYIDESEVLTPADEVYHLNKRDYTVPFVCGCRDIGEAARRIAEGASMLRTKGE-PGTGNIVEAVRHMRQVNAEIRQVASLREDELMTYAKNTGAPYEVLLEIKR 202
[Close]
BLAST of FC877876 vs. ExPASy Swiss-Prot
Match: PDXS_BACCZ (Pyridoxal biosynthesis lyase pdxS OS=Bacillus cereus (strain ZK / E33L) GN=pdxS PE=3 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 1.166e-47
Identity = 94/194 (48.45%), Postives = 141/194 (72.68%), Query Frame = 1 
Query:  277 IKAGLAQMLRGGAIVEVSSVEQAKIAEAAGACSIMVSEP------SRPGIKRMPDPSLVKSVKRAVSVPVMSRVRVGHFVEAQILESIGLDYIDESEVLGLADEYNFINKHNFRFPFVCGCRNLGEALRRIREGAAMIRIQGDLLNSGNIVETVKNVRSLMGDIRILNNMDEDEVFAFAKKIAAPYDLVAQTKQ 840
            +K G+A+M +GG I++V + EQAKIAE AGA ++M  E       +  G+ RM DP++V+ V  AVS+PVM++ R+GH VEA++LES+G+DYIDESEVL  ADE   +NK ++  PFVCGCR++GEA RRI EGA+M+R +G+   +GNIVE V+++R +  +IR + ++ EDE+  +AK   APY+++ + K+
Sbjct:   10 VKRGMAEMQKGGVIMDVINAEQAKIAEEAGAVAVMALERVPADIRAAGGVSRMADPTIVEEVMGAVSIPVMAKCRIGHLVEARVLESLGVDYIDESEVLTPADEVYHLNKRDYTVPFVCGCRDIGEAARRIAEGASMLRTKGE-PGTGNIVEAVRHMRQVNAEIRQVASLREDELMTYAKNTGAPYEVLLEIKR 202
[Close]
BLAST of FC877876 vs. ExPASy Swiss-Prot
Match: PDXS_BACCR (Pyridoxal biosynthesis lyase pdxS OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=pdxS PE=3 SV=2)

HSP 1 Score: 190.274 bits (482), Expect = 1.166e-47
Identity = 94/194 (48.45%), Postives = 141/194 (72.68%), Query Frame = 1 
Query:  277 IKAGLAQMLRGGAIVEVSSVEQAKIAEAAGACSIMVSEP------SRPGIKRMPDPSLVKSVKRAVSVPVMSRVRVGHFVEAQILESIGLDYIDESEVLGLADEYNFINKHNFRFPFVCGCRNLGEALRRIREGAAMIRIQGDLLNSGNIVETVKNVRSLMGDIRILNNMDEDEVFAFAKKIAAPYDLVAQTKQ 840
            +K G+A+M +GG I++V + EQAKIAE AGA ++M  E       +  G+ RM DP++V+ V  AVS+PVM++ R+GH VEA++LES+G+DYIDESEVL  ADE   +NK ++  PFVCGCR++GEA RRI EGA+M+R +G+   +GNIVE V+++R +  +IR + ++ EDE+  +AK   APY+++ + K+
Sbjct:   10 VKRGMAEMQKGGVIMDVVNAEQAKIAEEAGAVAVMALERVPADIRAAGGVSRMADPTIVEEVMGAVSIPVMAKCRIGHLVEARVLESLGVDYIDESEVLTPADEVYHLNKRDYTVPFVCGCRDIGEAARRIAEGASMLRTKGE-PGTGNIVEAVRHMRQVNAEIRQVASLREDELMTYAKNTGAPYEVLLEIKR 202
[Close]
BLAST of FC877876 vs. ExPASy Swiss-Prot
Match: PDXS_BACCQ (Pyridoxal biosynthesis lyase pdxS OS=Bacillus cereus (strain Q1) GN=pdxS PE=3 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 1.166e-47
Identity = 94/194 (48.45%), Postives = 141/194 (72.68%), Query Frame = 1 
Query:  277 IKAGLAQMLRGGAIVEVSSVEQAKIAEAAGACSIMVSEP------SRPGIKRMPDPSLVKSVKRAVSVPVMSRVRVGHFVEAQILESIGLDYIDESEVLGLADEYNFINKHNFRFPFVCGCRNLGEALRRIREGAAMIRIQGDLLNSGNIVETVKNVRSLMGDIRILNNMDEDEVFAFAKKIAAPYDLVAQTKQ 840
            +K G+A+M +GG I++V + EQAKIAE AGA ++M  E       +  G+ RM DP++V+ V  AVS+PVM++ R+GH VEA++LES+G+DYIDESEVL  ADE   +NK ++  PFVCGCR++GEA RRI EGA+M+R +G+   +GNIVE V+++R +  +IR + ++ EDE+  +AK   APY+++ + K+
Sbjct:   10 VKRGMAEMQKGGVIMDVINAEQAKIAEEAGAVAVMALERVPADIRAAGGVSRMADPTIVEEVMGAVSIPVMAKCRIGHLVEARVLESLGVDYIDESEVLTPADEVYHLNKRDYTVPFVCGCRDIGEAARRIAEGASMLRTKGE-PGTGNIVEAVRHMRQVNAEIRQVASLREDELMTYAKNTGAPYEVLREIKR 202
[Close]
BLAST of FC877876 vs. ExPASy Swiss-Prot
Match: PDXS_BACC7 (Pyridoxal biosynthesis lyase pdxS OS=Bacillus cereus (strain AH187) GN=pdxS PE=3 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 1.166e-47
Identity = 94/194 (48.45%), Postives = 141/194 (72.68%), Query Frame = 1 
Query:  277 IKAGLAQMLRGGAIVEVSSVEQAKIAEAAGACSIMVSEP------SRPGIKRMPDPSLVKSVKRAVSVPVMSRVRVGHFVEAQILESIGLDYIDESEVLGLADEYNFINKHNFRFPFVCGCRNLGEALRRIREGAAMIRIQGDLLNSGNIVETVKNVRSLMGDIRILNNMDEDEVFAFAKKIAAPYDLVAQTKQ 840
            +K G+A+M +GG I++V + EQAKIAE AGA ++M  E       +  G+ RM DP++V+ V  AVS+PVM++ R+GH VEA++LES+G+DYIDESEVL  ADE   +NK ++  PFVCGCR++GEA RRI EGA+M+R +G+   +GNIVE V+++R +  +IR + ++ EDE+  +AK   APY+++ + K+
Sbjct:   10 VKRGMAEMQKGGVIMDVINAEQAKIAEEAGAVAVMALERVPADIRAAGGVSRMADPTIVEEVMGAVSIPVMAKCRIGHLVEARVLESLGVDYIDESEVLTPADEVYHLNKRDYTVPFVCGCRDIGEAARRIAEGASMLRTKGE-PGTGNIVEAVRHMRQVNAEIRQVASLREDELMTYAKNTGAPYEVLLEIKR 202
[Close]
BLAST of FC877876 vs. ExPASy Swiss-Prot
Match: PDXS_BACC4 (Pyridoxal biosynthesis lyase pdxS OS=Bacillus cereus (strain B4264) GN=pdxS PE=3 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 1.166e-47
Identity = 94/194 (48.45%), Postives = 141/194 (72.68%), Query Frame = 1 
Query:  277 IKAGLAQMLRGGAIVEVSSVEQAKIAEAAGACSIMVSEP------SRPGIKRMPDPSLVKSVKRAVSVPVMSRVRVGHFVEAQILESIGLDYIDESEVLGLADEYNFINKHNFRFPFVCGCRNLGEALRRIREGAAMIRIQGDLLNSGNIVETVKNVRSLMGDIRILNNMDEDEVFAFAKKIAAPYDLVAQTKQ 840
            +K G+A+M +GG I++V + EQAKIAE AGA ++M  E       +  G+ RM DP++V+ V  AVS+PVM++ R+GH VEA++LES+G+DYIDESEVL  ADE   +NK ++  PFVCGCR++GEA RRI EGA+M+R +G+   +GNIVE V+++R +  +IR + ++ EDE+  +AK   APY+++ + K+
Sbjct:   10 VKRGMAEMQKGGVIMDVVNAEQAKIAEEAGAVAVMALERVPADIRAAGGVSRMADPTIVEEVMGAVSIPVMAKCRIGHLVEARVLESLGVDYIDESEVLTPADEVYHLNKRDYTVPFVCGCRDIGEAARRIAEGASMLRTKGE-PGTGNIVEAVRHMRQVNAEIRQVASLREDELMTYAKNTGAPYEVLLEIKR 202
[Close]
BLAST of FC877876 vs. ExPASy Swiss-Prot
Match: PDXS_BACC3 (Pyridoxal biosynthesis lyase pdxS OS=Bacillus cereus (strain 03BB102) GN=pdxS PE=3 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 1.166e-47
Identity = 94/194 (48.45%), Postives = 141/194 (72.68%), Query Frame = 1 
Query:  277 IKAGLAQMLRGGAIVEVSSVEQAKIAEAAGACSIMVSEP------SRPGIKRMPDPSLVKSVKRAVSVPVMSRVRVGHFVEAQILESIGLDYIDESEVLGLADEYNFINKHNFRFPFVCGCRNLGEALRRIREGAAMIRIQGDLLNSGNIVETVKNVRSLMGDIRILNNMDEDEVFAFAKKIAAPYDLVAQTKQ 840
            +K G+A+M +GG I++V + EQAKIAE AGA ++M  E       +  G+ RM DP++V+ V  AVS+PVM++ R+GH VEA++LES+G+DYIDESEVL  ADE   +NK ++  PFVCGCR++GEA RRI EGA+M+R +G+   +GNIVE V+++R +  +IR + ++ EDE+  +AK   APY+++ + K+
Sbjct:   10 VKRGMAEMQKGGVIMDVINAEQAKIAEEAGAVAVMALERVPADIRAAGGVSRMADPTIVEEVMGAVSIPVMAKCRIGHLVEARVLESLGVDYIDESEVLTPADEVYHLNKRDYTVPFVCGCRDIGEAARRIAEGASMLRTKGE-PGTGNIVEAVRHMRQVNAEIRQVASLREDELMTYAKNTGAPYEVLLEIKR 202
[Close]
BLAST of FC877876 vs. ExPASy Swiss-Prot
Match: PDXS_BACC2 (Pyridoxal biosynthesis lyase pdxS OS=Bacillus cereus (strain G9842) GN=pdxS PE=3 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 1.166e-47
Identity = 94/194 (48.45%), Postives = 141/194 (72.68%), Query Frame = 1 
Query:  277 IKAGLAQMLRGGAIVEVSSVEQAKIAEAAGACSIMVSEP------SRPGIKRMPDPSLVKSVKRAVSVPVMSRVRVGHFVEAQILESIGLDYIDESEVLGLADEYNFINKHNFRFPFVCGCRNLGEALRRIREGAAMIRIQGDLLNSGNIVETVKNVRSLMGDIRILNNMDEDEVFAFAKKIAAPYDLVAQTKQ 840
            +K G+A+M +GG I++V + EQAKIAE AGA ++M  E       +  G+ RM DP++V+ V  AVS+PVM++ R+GH VEA++LES+G+DYIDESEVL  ADE   +NK ++  PFVCGCR++GEA RRI EGA+M+R +G+   +GNIVE V+++R +  +IR + ++ EDE+  +AK   APY+++ + K+
Sbjct:   10 VKRGMAEMQKGGVIMDVINAEQAKIAEEAGAVAVMALERVPADIRAAGGVSRMADPTIVEEVMGAVSIPVMAKCRIGHLVEARVLESLGVDYIDESEVLTPADEVYHLNKRDYTVPFVCGCRDIGEAARRIAEGASMLRTKGE-PGTGNIVEAVRHMRQVNAEIRQVASLREDELMTYAKNTGAPYEVLLEIKR 202
The following BLAST results are available for this feature:
BLAST of FC877876 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 208
Match NameE-valueIdentityDescription
PDXS_BACWK1.166e-4748.45Pyridoxal biosynthesis lyase pdxS OS=Bacillus weih... [more]
PDXS_BACP21.166e-4748.26Pyridoxal biosynthesis lyase pdxS OS=Bacillus pumi... [more]
PDXS_BACHK1.166e-4748.45Pyridoxal biosynthesis lyase pdxS OS=Bacillus thur... [more]
PDXS_BACCZ1.166e-4748.45Pyridoxal biosynthesis lyase pdxS OS=Bacillus cere... [more]
PDXS_BACCR1.166e-4748.45Pyridoxal biosynthesis lyase pdxS OS=Bacillus cere... [more]
PDXS_BACCQ1.166e-4748.45Pyridoxal biosynthesis lyase pdxS OS=Bacillus cere... [more]
PDXS_BACC71.166e-4748.45Pyridoxal biosynthesis lyase pdxS OS=Bacillus cere... [more]
PDXS_BACC41.166e-4748.45Pyridoxal biosynthesis lyase pdxS OS=Bacillus cere... [more]
PDXS_BACC31.166e-4748.45Pyridoxal biosynthesis lyase pdxS OS=Bacillus cere... [more]
PDXS_BACC21.166e-4748.45Pyridoxal biosynthesis lyase pdxS OS=Bacillus cere... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA94CE03RM1 IVIA1 Citrus clementina cDNA clone IC0AAA94CE03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877876 ID=FC877876; Name=FC877876; organism=Citrus clementina; type=EST; length=841bp
TCGAAATTTCTACACTAATCAATCAATTCCCCACCGACTAACCCCACCTT
CGAAGCTCTTCAGAACCTTCTCGAACTCGCCCCAATCCTCACCCTCCCTT
CAATTTTATAAACCCTTTCTACAAAAAGAAACCCAGTACTCGATCAAACG
ATTCAATAACTACGCTTCTCGCATCAGTGAGACATTTTTACAAACGCCTT
TGCAATGGCCGAAGACGGAGCGGTCACAGTGTACGGTGGCAGCGCCATTA
CTGACGCCAAGAAGAACCCGTTTTCGATCAAAGCCGGCCTTGCCCAAATG
CTACGTGGCGGGGCCATTGTTGAAGTCTCCAGTGTGGAACAAGCCAAGAT
CGCCGAAGCAGCTGGCGCCTGTTCTATCATGGTATCCGAGCCCAGCCGGC
CCGGCATTAAGCGCATGCCGGATCCTTCTCTCGTTAAAAGCGTTAAACGC
GCCGTTTCAGTCCCCGTTATGTCACGTGTTCGTGTTGGGCATTTTGTTGA
AGCGCAGATTCTTGAAAGTATTGGGCTCGATTACATTGACGAGAGTGAGG
TTTTAGGATTAGCTGATGAATATAATTTTATTAACAAACATAACTTTAGG
TTCCCGTTTGTGTGTGGTTGTAGGAATCTTGGTGAAGCTTTGAGGAGAAT
TAGAGAAGGAGCTGCTATGATAAGAATACAAGGGGATTTGTTAAATTCTG
GTAATATTGTCGAGACTGTTAAAAATGTGAGGTCGTTAATGGGAGATATT
CGAATTTTGAATAACATGGATGAAGATGAGGTCTTCGCGTTTGCTAAGAA
GATAGCGGCTCCTTATGATTTGGTGGCTCAAACTAAACAAA
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