FC877876

Overview
NameFC877876
Unique NameFC877876
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length841
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11861 contig Ccv1_Contig11861:34..875. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC877876 vs. ExPASy Swiss-Prot
Match: PDXS_BACC1 (Pyridoxal biosynthesis lyase pdxS OS=Bacillus cereus (strain ATCC 10987) GN=pdxS PE=3 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 1.166e-47
Identity = 94/194 (48.45%), Postives = 141/194 (72.68%), Query Frame = 1
Query:  277 IKAGLAQMLRGGAIVEVSSVEQAKIAEAAGACSIMVSEP------SRPGIKRMPDPSLVKSVKRAVSVPVMSRVRVGHFVEAQILESIGLDYIDESEVLGLADEYNFINKHNFRFPFVCGCRNLGEALRRIREGAAMIRIQGDLLNSGNIVETVKNVRSLMGDIRILNNMDEDEVFAFAKKIAAPYDLVAQTKQ 840
            +K G+A+M +GG I++V + EQAKIAE AGA ++M  E       +  G+ RM DP++V+ V  AVS+PVM++ R+GH VEA++LES+G+DYIDESEVL  ADE   +NK ++  PFVCGCR++GEA RRI EGA+M+R +G+   +GNIVE V+++R +  +IR + ++ EDE+  +AK   APY+++ + K+
Sbjct:   10 VKRGMAEMQKGGVIMDVINAEQAKIAEEAGAVAVMALERVPADIRAAGGVSRMADPTIVEEVMGAVSIPVMAKCRIGHLVEARVLESLGVDYIDESEVLTPADEVYHLNKRDYTVPFVCGCRDIGEAARRIAEGASMLRTKGE-PGTGNIVEAVRHMRQVNAEIRQVASLREDELMTYAKNTGAPYEVLLEIKR 202          
BLAST of FC877876 vs. ExPASy Swiss-Prot
Match: PDXS_BACC0 (Pyridoxal biosynthesis lyase pdxS OS=Bacillus cereus (strain AH820) GN=pdxS PE=3 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 1.166e-47
Identity = 94/194 (48.45%), Postives = 141/194 (72.68%), Query Frame = 1
Query:  277 IKAGLAQMLRGGAIVEVSSVEQAKIAEAAGACSIMVSEP------SRPGIKRMPDPSLVKSVKRAVSVPVMSRVRVGHFVEAQILESIGLDYIDESEVLGLADEYNFINKHNFRFPFVCGCRNLGEALRRIREGAAMIRIQGDLLNSGNIVETVKNVRSLMGDIRILNNMDEDEVFAFAKKIAAPYDLVAQTKQ 840
            +K G+A+M +GG I++V + EQAKIAE AGA ++M  E       +  G+ RM DP++V+ V  AVS+PVM++ R+GH VEA++LES+G+DYIDESEVL  ADE   +NK ++  PFVCGCR++GEA RRI EGA+M+R +G+   +GNIVE V+++R +  +IR + ++ EDE+  +AK   APY+++ + K+
Sbjct:   10 VKRGMAEMQKGGVIMDVINAEQAKIAEEAGAVAVMALERVPADIRAAGGVSRMADPTIVEEVMGAVSIPVMAKCRIGHLVEARVLESLGVDYIDESEVLTPADEVYHLNKRDYTVPFVCGCRDIGEAARRIAEGASMLRTKGE-PGTGNIVEAVRHMRQVNAEIRQVASLREDELMTYAKNTGAPYEVLLEIKR 202          
BLAST of FC877876 vs. ExPASy Swiss-Prot
Match: PDXS_ANOFW (Pyridoxal biosynthesis lyase pdxS OS=Anoxybacillus flavithermus (strain DSM 21510 / WK1) GN=pdxS PE=3 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 1.166e-47
Identity = 94/194 (48.45%), Postives = 142/194 (73.20%), Query Frame = 1
Query:  277 IKAGLAQMLRGGAIVEVSSVEQAKIAEAAGACSIMVSEP------SRPGIKRMPDPSLVKSVKRAVSVPVMSRVRVGHFVEAQILESIGLDYIDESEVLGLADEYNFINKHNFRFPFVCGCRNLGEALRRIREGAAMIRIQGDLLNSGNIVETVKNVRSLMGDIRILNNMDEDEVFAFAKKIAAPYDLVAQTKQ 840
            +K G+A+M +GG I++V + EQAKIAEAAGA ++M  E       +  G+ RM DP++++ V +AVS+PVM++ R+GH+VEA++LE++G+DYIDESEVL  ADE   I+K  F  PFVCGCR+LGEA RRI EGA+M+R +G+   +GNIVE V+++R +   +R + +M EDE+   AK + AP++++ + K+
Sbjct:    9 VKRGMAEMQKGGVIMDVVNAEQAKIAEAAGAVAVMALERVPADIRAAGGVARMADPTVIEEVMKAVSIPVMAKARIGHYVEARVLEALGVDYIDESEVLTPADEEFHIDKRQFTVPFVCGCRDLGEAARRIAEGASMLRTKGE-PGTGNIVEAVRHMRKVNAQVRKVVSMSEDELMTEAKNLGAPFEVLLEIKR 201          
BLAST of FC877876 vs. ExPASy Swiss-Prot
Match: PDXS_OCEIH (Pyridoxal biosynthesis lyase pdxS OS=Oceanobacillus iheyensis GN=pdxS PE=3 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 1.523e-47
Identity = 97/194 (50.00%), Postives = 141/194 (72.68%), Query Frame = 1
Query:  277 IKAGLAQMLRGGAIVEVSSVEQAKIAEAAGACSIMVSE--PS----RPGIKRMPDPSLVKSVKRAVSVPVMSRVRVGHFVEAQILESIGLDYIDESEVLGLADEYNFINKHNFRFPFVCGCRNLGEALRRIREGAAMIRIQGDLLNSGNIVETVKNVRSLMGDIRILNNMDEDEVFAFAKKIAAPYDLVAQTKQ 840
            +K G+AQM +GG I++V + EQAKIAE AGA ++M  E  PS      G+ RM +PSLV+ + ++VS+PVM++ R+GH VEA++LES+G+DYIDESEVL  ADE   +NK ++  PFVCGCR+LGEA RRI EGAAM+R +G+   +GNIVE V+++R +   +  + +M +DE+   AK + APY+++ Q K+
Sbjct:   10 VKRGMAQMQKGGVIMDVVNSEQAKIAEQAGAVAVMALERVPSDIRAAGGVARMANPSLVEEIIQSVSIPVMAKARIGHIVEARVLESLGVDYIDESEVLTPADEVFHLNKSDYTVPFVCGCRDLGEAARRIGEGAAMLRTKGE-PGTGNIVEAVRHIREVQAQVNKVVHMSKDELMTEAKNLGAPYEILLQIKE 202          
BLAST of FC877876 vs. ExPASy Swiss-Prot
Match: PDXS_BIFLO (Pyridoxal biosynthesis lyase pdxS OS=Bifidobacterium longum GN=pdxS PE=3 SV=2)

HSP 1 Score: 189.889 bits (481), Expect = 1.523e-47
Identity = 95/193 (49.22%), Postives = 141/193 (73.06%), Query Frame = 1
Query:  262 KNPFSIKAGLAQMLRGGAIVEVSSVEQAKIAEAAGACSIMVSEP------SRPGIKRMPDPSLVKSVKRAVSVPVMSRVRVGHFVEAQILESIGLDYIDESEVLGLADEYNFINKHNFRFPFVCGCRNLGEALRRIREGAAMIRIQGDLLNSGNIVETVKNVRSLMGDIRILNNMDEDEVFAFAKKIAAPYDL 822
            +N   +   LAQML+GG I++V++ EQAKIA+ AGAC++M  E       +  G+ RM DP+++K ++ AVS+PVM++VR+GH  EA+IL++I +DYIDESEVL  AD+   I+K+ F  PFVCG +NLGEALRRI EGAAMIR +G+   +G++++ V+++R++   IR L  + +DEV+  AK++A PYDL
Sbjct:    3 QNRAELNRNLAQMLKGGVIMDVTTPEQAKIAQDAGACAVMALERIPADIRAAGGVSRMSDPAMIKGIQEAVSIPVMAKVRIGHIAEARILQAIEIDYIDESEVLSPADDVYHIDKNQFDVPFVCGAKNLGEALRRIAEGAAMIRTKGE-PGTGDVIQAVRHMRTMNKQIRELVGLRDDEVYEAAKQLAVPYDL 194          
BLAST of FC877876 vs. ExPASy Swiss-Prot
Match: PDXS_BIFLI (Pyridoxal biosynthesis lyase pdxS OS=Bifidobacterium longum subsp. infantis (strain ATCC 15697 / DSM 20088 / NCTC 11817 / S12) GN=pdxS PE=3 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 1.523e-47
Identity = 95/193 (49.22%), Postives = 141/193 (73.06%), Query Frame = 1
Query:  262 KNPFSIKAGLAQMLRGGAIVEVSSVEQAKIAEAAGACSIMVSEP------SRPGIKRMPDPSLVKSVKRAVSVPVMSRVRVGHFVEAQILESIGLDYIDESEVLGLADEYNFINKHNFRFPFVCGCRNLGEALRRIREGAAMIRIQGDLLNSGNIVETVKNVRSLMGDIRILNNMDEDEVFAFAKKIAAPYDL 822
            +N   +   LAQML+GG I++V++ EQAKIA+ AGAC++M  E       +  G+ RM DP+++K ++ AVS+PVM++VR+GH  EA+IL++I +DYIDESEVL  AD+   I+K+ F  PFVCG +NLGEALRRI EGAAMIR +G+   +G++++ V+++R++   IR L  + +DEV+  AK++A PYDL
Sbjct:    3 QNRAELNRNLAQMLKGGVIMDVTTPEQAKIAQDAGACAVMALERIPADIRAAGGVSRMSDPAMIKGIQEAVSIPVMAKVRIGHIAEARILQAIEIDYIDESEVLSPADDVYHIDKNQFDVPFVCGAKNLGEALRRIAEGAAMIRTKGE-PGTGDVIQAVRHMRTMNKQIRELVGLRDDEVYEAAKQLAVPYDL 194          
BLAST of FC877876 vs. ExPASy Swiss-Prot
Match: PDXS_BACSU (Pyridoxal biosynthesis lyase pdxS OS=Bacillus subtilis GN=pdxS PE=1 SV=3)

HSP 1 Score: 189.889 bits (481), Expect = 1.523e-47
Identity = 96/194 (49.48%), Postives = 139/194 (71.65%), Query Frame = 1
Query:  277 IKAGLAQMLRGGAIVEVSSVEQAKIAEAAGACSIMVSEP------SRPGIKRMPDPSLVKSVKRAVSVPVMSRVRVGHFVEAQILESIGLDYIDESEVLGLADEYNFINKHNFRFPFVCGCRNLGEALRRIREGAAMIRIQGDLLNSGNIVETVKNVRSLMGDIRILNNMDEDEVFAFAKKIAAPYDLVAQTKQ 840
            +K G+A+M +GG I++V + EQAKIAE AGA ++M  E       +  G+ RM DP++V+ V  AVS+PVM++ R+GH VEA++LE++G+DYIDESEVL  ADE   +NK+ +  PFVCGCR+LGEA RRI EGA+M+R +G+   +GNIVE V+++R +   +R +  M EDE+   AK + APY+L+ Q K+
Sbjct:    9 VKRGMAEMQKGGVIMDVINAEQAKIAEEAGAVAVMALERVPADIRAAGGVARMADPTIVEEVMNAVSIPVMAKARIGHIVEARVLEAMGVDYIDESEVLTPADEEFHLNKNEYTVPFVCGCRDLGEATRRIAEGASMLRTKGE-PGTGNIVEAVRHMRKVNAQVRKVVAMSEDELMTEAKNLGAPYELLLQIKK 201          
BLAST of FC877876 vs. ExPASy Swiss-Prot
Match: PDXS_STRCO (Pyridoxal biosynthesis lyase pdxS OS=Streptomyces coelicolor GN=pdxS PE=3 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 1.989e-47
Identity = 97/194 (50.00%), Postives = 137/194 (70.62%), Query Frame = 1
Query:  277 IKAGLAQMLRGGAIVEVSSVEQAKIAEAAGACSIMVSEP------SRPGIKRMPDPSLVKSVKRAVSVPVMSRVRVGHFVEAQILESIGLDYIDESEVLGLADEYNFINKHNFRFPFVCGCRNLGEALRRIREGAAMIRIQGDLLNSGNIVETVKNVRSLMGDIRILNNMDEDEVFAFAKKIAAPYDLVAQTKQ 840
            +K G+A+ L+GG I++V + EQAKIAE AGA ++M  E          G+ RM DP +++ +  AVS+PVM++ R+GHFVEAQ+L+S+G+DYIDESEVL  ADE N  +K  F  PFVCG  NLGEALRRI EGAAMIR +G+   +GN+VE V+++R +  +I  L   D +E++A AK++ APY+LV +  +
Sbjct:   18 VKRGMAEQLKGGVIMDVVTPEQAKIAEDAGAVAVMALERVPADIRKDGGVARMSDPDMIEGIIGAVSIPVMAKSRIGHFVEAQVLQSLGVDYIDESEVLTPADEVNHSDKFAFTTPFVCGATNLGEALRRIAEGAAMIRSKGE-AGTGNVVEAVRHLRQIKNEIARLRGYDNNELYAAAKELRAPYELVKEVSE 210          
BLAST of FC877876 vs. ExPASy Swiss-Prot
Match: PDXS_STAAW (Pyridoxal biosynthesis lyase pdxS OS=Staphylococcus aureus (strain MW2) GN=pdxS PE=3 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 1.989e-47
Identity = 97/193 (50.26%), Postives = 137/193 (70.98%), Query Frame = 1
Query:  277 IKAGLAQMLRGGAIVEVSSVEQAKIAEAAGACSIMVSE--PS----RPGIKRMPDPSLVKSVKRAVSVPVMSRVRVGHFVEAQILESIGLDYIDESEVLGLADEYNFINKHNFRFPFVCGCRNLGEALRRIREGAAMIRIQGDLLNSGNIVETVKNVRSLMGDIRILNNMDEDEVFAFAKKIAAPYDLVAQTK 837
            +K G+A+M +GG I++V + EQA+IAE AGA ++M  E  PS      G+ RM +P +V+ V  AVS+PVM++ R+GH  EA++LE++G+DYIDESEVL  ADE   + K  F  PFVCGCRNLGEA RRI EGAAM+R +G+   +GNIVE V+++R +  ++  L  M++DE+  FAK I APY+++ Q K
Sbjct:   10 VKRGMAEMQKGGVIMDVVNAEQARIAEEAGAVAVMALERVPSDIRAAGGVARMANPKIVEEVMNAVSIPVMAKARIGHITEARVLEAMGVDYIDESEVLTPADEEYHLRKDQFTVPFVCGCRNLGEAARRIGEGAAMLRTKGE-PGTGNIVEAVRHMRQVNSEVSRLTVMNDDEIMTFAKDIGAPYEILKQIK 201          
BLAST of FC877876 vs. ExPASy Swiss-Prot
Match: PDXS_STAAT (Pyridoxal biosynthesis lyase pdxS OS=Staphylococcus aureus (strain USA300 / TCH1516) GN=pdxS PE=3 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 1.989e-47
Identity = 97/193 (50.26%), Postives = 137/193 (70.98%), Query Frame = 1
Query:  277 IKAGLAQMLRGGAIVEVSSVEQAKIAEAAGACSIMVSE--PS----RPGIKRMPDPSLVKSVKRAVSVPVMSRVRVGHFVEAQILESIGLDYIDESEVLGLADEYNFINKHNFRFPFVCGCRNLGEALRRIREGAAMIRIQGDLLNSGNIVETVKNVRSLMGDIRILNNMDEDEVFAFAKKIAAPYDLVAQTK 837
            +K G+A+M +GG I++V + EQA+IAE AGA ++M  E  PS      G+ RM +P +V+ V  AVS+PVM++ R+GH  EA++LE++G+DYIDESEVL  ADE   + K  F  PFVCGCRNLGEA RRI EGAAM+R +G+   +GNIVE V+++R +  ++  L  M++DE+  FAK I APY+++ Q K
Sbjct:   10 VKRGMAEMQKGGVIMDVVNAEQARIAEEAGAVAVMALERVPSDIRAAGGVARMANPKIVEEVMNAVSIPVMAKARIGHITEARVLEAMGVDYIDESEVLTPADEEYHLRKDQFTVPFVCGCRNLGEAARRIGEGAAMLRTKGE-PGTGNIVEAVRHMRQVNSEVSRLTVMNDDEIMTFAKDIGAPYEILKQIK 201          
The following BLAST results are available for this feature:
BLAST of FC877876 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 208
Match NameE-valueIdentityDescription
PDXS_BACC11.166e-4748.45Pyridoxal biosynthesis lyase pdxS OS=Bacillus cere... [more]
PDXS_BACC01.166e-4748.45Pyridoxal biosynthesis lyase pdxS OS=Bacillus cere... [more]
PDXS_ANOFW1.166e-4748.45Pyridoxal biosynthesis lyase pdxS OS=Anoxybacillus... [more]
PDXS_OCEIH1.523e-4750.00Pyridoxal biosynthesis lyase pdxS OS=Oceanobacillu... [more]
PDXS_BIFLO1.523e-4749.22Pyridoxal biosynthesis lyase pdxS OS=Bifidobacteri... [more]
PDXS_BIFLI1.523e-4749.22Pyridoxal biosynthesis lyase pdxS OS=Bifidobacteri... [more]
PDXS_BACSU1.523e-4749.48Pyridoxal biosynthesis lyase pdxS OS=Bacillus subt... [more]
PDXS_STRCO1.989e-4750.00Pyridoxal biosynthesis lyase pdxS OS=Streptomyces ... [more]
PDXS_STAAW1.989e-4750.26Pyridoxal biosynthesis lyase pdxS OS=Staphylococcu... [more]
PDXS_STAAT1.989e-4750.26Pyridoxal biosynthesis lyase pdxS OS=Staphylococcu... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA94CE03RM1 IVIA1 Citrus clementina cDNA clone IC0AAA94CE03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877876 ID=FC877876; Name=FC877876; organism=Citrus clementina; type=EST; length=841bp
TCGAAATTTCTACACTAATCAATCAATTCCCCACCGACTAACCCCACCTT
CGAAGCTCTTCAGAACCTTCTCGAACTCGCCCCAATCCTCACCCTCCCTT
CAATTTTATAAACCCTTTCTACAAAAAGAAACCCAGTACTCGATCAAACG
ATTCAATAACTACGCTTCTCGCATCAGTGAGACATTTTTACAAACGCCTT
TGCAATGGCCGAAGACGGAGCGGTCACAGTGTACGGTGGCAGCGCCATTA
CTGACGCCAAGAAGAACCCGTTTTCGATCAAAGCCGGCCTTGCCCAAATG
CTACGTGGCGGGGCCATTGTTGAAGTCTCCAGTGTGGAACAAGCCAAGAT
CGCCGAAGCAGCTGGCGCCTGTTCTATCATGGTATCCGAGCCCAGCCGGC
CCGGCATTAAGCGCATGCCGGATCCTTCTCTCGTTAAAAGCGTTAAACGC
GCCGTTTCAGTCCCCGTTATGTCACGTGTTCGTGTTGGGCATTTTGTTGA
AGCGCAGATTCTTGAAAGTATTGGGCTCGATTACATTGACGAGAGTGAGG
TTTTAGGATTAGCTGATGAATATAATTTTATTAACAAACATAACTTTAGG
TTCCCGTTTGTGTGTGGTTGTAGGAATCTTGGTGAAGCTTTGAGGAGAAT
TAGAGAAGGAGCTGCTATGATAAGAATACAAGGGGATTTGTTAAATTCTG
GTAATATTGTCGAGACTGTTAAAAATGTGAGGTCGTTAATGGGAGATATT
CGAATTTTGAATAACATGGATGAAGATGAGGTCTTCGCGTTTGCTAAGAA
GATAGCGGCTCCTTATGATTTGGTGGCTCAAACTAAACAAA
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