FC877879

Overview
NameFC877879
Unique NameFC877879
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length903
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10470 contig Ccv1_Contig10470:1..903. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC877879 vs. ExPASy Swiss-Prot
Match: TSSP_MOUSE (Thymus-specific serine protease OS=Mus musculus GN=Prss16 PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 5.348e-25
Identity = 66/154 (42.86%), Postives = 93/154 (60.39%), Query Frame = 2
Query:  290 LDHFSFADLPTFSQRYLINTDHWVGPNRLGPIFLYCGNEGDIEWFAVNSGFVWDIAPRFGAMLVFPEHRYYGESMPYGSTEVAYQNATTLSYLTAEQALADFAVFITNLKQNLS-AEASPVVLFGGSYGGMLAAWMRLKYPHIAIGALASSAPI 748
            LD F+ +D  TF QRY +N  H  G +   P+FL+ G EG +   +V +G    +AP +GA+++  EHR+YG SMP G  ++A      L YL++  ALAD A     L   L+ + +SP + FGGSY G LA W RLK+PH+   A+ASSAP+
Sbjct:   65 LDPFNASDRRTFLQRYWVNDQHRTGQDV--PVFLHIGGEGSLGPGSVMAGHPAALAPAWGALVISLEHRFYGLSMPAGGLDLAL-----LRYLSSRHALADVASARQALSGLLNVSSSSPWICFGGSYAGSLATWARLKFPHLVFAAVASSAPL 211          
BLAST of FC877879 vs. ExPASy Swiss-Prot
Match: YM9I_CAEEL (Putative serine protease F56F10.1 OS=Caenorhabditis elegans GN=F56F10.1 PE=1 SV=2)

HSP 1 Score: 98.2117 bits (243), Expect = 6.765e-20
Identity = 66/193 (34.20%), Postives = 96/193 (49.74%), Query Frame = 2
Query:  290 LDHFSFADLPTFSQRYLINTDHWVGPNRLGPIFLYCGNEG--DIEWFAVNSGFVWDIAPRFGAMLVFPEHRYYGESMPYGSTEVAYQNATTLSYLTAEQALADFAVFITNLKQNLSAEASPVVLFGGSYGGMLAAWMRLKYPHIAIGALASSAPILQFEDIVPPETFYNIVSSDFKRESASCFNTIKESWGEL 862
            LDHF   +  T++Q+Y  N    V       IFL  G EG  + +W A  +      A  FGA +   EHR++G+S P     +     ++L YLT +QALAD A FI  + Q    +    V FGGSY G LAAW R KYP + +G++ASSAP+    D      +  +V  D +     C    K+++ ++
Sbjct:   63 LDHFDPYNTKTWNQKYFYNP---VFSRNNSIIFLMIGGEGPENGKWAANPNVQYLQWAKEFGADVFDLEHRFFGDSWP-----IPDMQTSSLRYLTTQQALADLAFFIEFMNQQYGFKNPRWVTFGGSYPGSLAAWFRQKYPQLTVGSVASSAPVNLKLDFY---EYAMVVEDDLRITDPKCAQATKDAFVQM 244          
BLAST of FC877879 vs. ExPASy Swiss-Prot
Match: YM67_CAEEL (Putative serine protease K12H4.7 OS=Caenorhabditis elegans GN=K12H4.7 PE=1 SV=2)

HSP 1 Score: 97.4413 bits (241), Expect = 1.154e-19
Identity = 67/207 (32.37%), Postives = 98/207 (47.34%), Query Frame = 2
Query:  290 LDHFSFADLPTFSQRYLINTDHWVGPNRLGPIFLYCGNEGDIE--WFAVNSGFVWDIAPRFGAMLVFPEHRYYGESMPYGSTEVAYQNATTLSYLTAEQALADFAVFITNLKQNLSAEASPV-VLFGGSYGGMLAAWMRLKYPHIAIGALASSAPILQFEDIVPPETFYNIVSSDFKRESASCFNTIKESWGELVSVRQKENGLLEL 901
            LDHF  +   TF QRY  N + W      GP FL  G EG     W +     + ++A + GA +   EHR+YGE+ P     V       L YL++ QA+ D A FI  +       A+   V FGGSY G LAAW R K+P +   A+ SS P+    D    + +  +V +   R S  C  ++ + +  + S+ Q  +G  +L
Sbjct:   67 LDHFDSSVGKTFQQRYYHN-NQWYKAG--GPAFLMLGGEGPESSYWVSYPGLEITNLAAKQGAWVFDIEHRFYGETHPTSDMSVP-----NLKYLSSAQAIEDAAAFIKAMTAKFPQLANAKWVTFGGSYSGALAAWTRAKHPELVYAAVGSSGPVQAEVDF---KEYLEVVQNSITRNSTECAASVTQGFNLVASLLQTSDGRKQL 262          
The following BLAST results are available for this feature:
BLAST of FC877879 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
TSSP_MOUSE5.348e-2542.86Thymus-specific serine protease OS=Mus musculus GN... [more]
YM9I_CAEEL6.765e-2034.20Putative serine protease F56F10.1 OS=Caenorhabditi... [more]
YM67_CAEEL1.154e-1932.37Putative serine protease K12H4.7 OS=Caenorhabditis... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA100AD02RM1 IVIA1 Citrus clementina cDNA clone IC0AAA100AD02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877879 ID=FC877879; Name=FC877879; organism=Citrus clementina; type=EST; length=903bp
CGACATCTAACAGTTTAACAGACGAGCTATCTTTCTCAGTCCTCACTGTC
GCTGAACGCCGAAATTGACAATGCCAAAAACCAGACAGCAAAAGCAAAAC
TCACTGTATCTCTCTCCTGTTATCACCATCGTCATCATCTCCATTTTATC
TCCGTTATCACTTGCATCACAGCCGTCCAAATTCAGGCGGGCCCCACGCT
TCGTCGGAAAATTGTCACACCTAACTGAACCCCCCCAACGACAACAACAG
CAGCAGTACCGGTATGAGACCCGATATTTCGAGCAACGACTCGACCACTT
CAGCTTTGCTGATCTCCCGACATTCTCTCAAAGGTACCTGATCAACACCG
ATCACTGGGTGGGCCCCAACCGTCTGGGTCCCATCTTCCTCTACTGTGGC
AACGAAGGCGACATCGAGTGGTTCGCCGTTAATTCCGGCTTTGTGTGGGA
CATCGCTCCCAGGTTTGGCGCCATGCTTGTCTTTCCCGAGCATCGGTACT
ATGGTGAGTCGATGCCATATGGAAGCACAGAAGTGGCATATCAAAATGCT
ACTACATTATCATATTTGACGGCCGAGCAAGCTCTTGCTGATTTTGCTGT
CTTTATTACTAACCTGAAGCAGAATTTATCGGCTGAAGCTTCTCCCGTAG
TGTTATTTGGTGGATCATATGGTGGAATGTTAGCTGCATGGATGAGGTTA
AAGTATCCTCACATTGCAATTGGTGCGCTTGCTTCATCAGCGCCAATTCT
TCAATTTGAAGATATTGTCCCACCAGAAACATTTTACAACATTGTATCCA
GTGATTTCAAGCGTGAAAGTGCCAGCTGCTTCAACACTATAAAGGAGTCC
TGGGGTGAGTTGGTATCAGTGAGGCAAAAAGAGAATGGACTTCTTGAACT
GAC
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