FC877880

Overview
NameFC877880
Unique NameFC877880
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length881
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC877880 vs. ExPASy Swiss-Prot
Match: CATQ_RAT (Cathepsin Q OS=Rattus norvegicus GN=Ctsq PE=2 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 2.156e-31
Identity = 79/234 (33.76%), Postives = 123/234 (52.56%), Query Frame = 2
Query:  197 FEAWLVKHGKAYNALGEKEKRFEIFKENLRFIDEHNSEN----RTYKVGLNRFADLTNEEYRSMHLGARFGAKRTS--LKSKRSNRYLPRVG---EALPDSVDWRKKGAVAEVKDQGSCGSCWAFSTIAAVEGINKIVTGSLISLSEQELVDCDTSY-NEGCNGGLMDYAFEFIIDNGGIDTEEDYPYKAIDGSCDTYRKNAKVVTIDDYEDVPLNDEKALQKAVANQPVSVAI 868
            ++ W +K+ K Y+   E  KR  +++EN++ I+ HN EN     TY + +N FAD+T+EE++ M +G +     T   L  +    + P      +ALP  VDWR +G V  V+ QG C SCWAF    A+EG     TG LI LS Q L+DC     N GC  G    AF++++ NGG++ E  YPY+  +G C    KN+    I  +  +P +++  +       P++  +
Sbjct:   29 WQEWKIKYEKLYSPEEEVLKRV-VWEENVKKIELHNRENSLGKNTYTMEINDFADMTDEEFKDMIIGFQLPVHNTEKRLWKRALGSFFPNSWNWRDALPKFVDWRNEGYVTRVRKQGGCSSCWAFPVTGAIEGQMFKKTGKLIPLSVQNLIDCSKPQGNRGCLWGNTYNAFQYVLHNGGLEAEATYPYERKEGVCRYNPKNSS-AKITGFVVLPESEDVLMDAVATKGPIATGV 260          
BLAST of FC877880 vs. ExPASy Swiss-Prot
Match: CATL1_PARTE (Cathepsin L 1 OS=Paramecium tetraurelia GN=GSPATT00020990001 PE=1 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 2.156e-31
Identity = 81/231 (35.06%), Postives = 129/231 (55.84%), Query Frame = 2
Query:  194 MFEAWLVKHGKAYNALGEKEKRFEIFKENLRFIDE--HNSENRTYKVGLNRFADLTNEEYRSMHLGARFGAKRTSLKSKRSNRYLPRVGEALPDSVDW--RKKGAVAEVKDQGSCGSCWAFSTIAAVEGINKIVTGSLISLSEQELVDCDTSY-NEGCNGGLMDYAFEFIIDNGGIDTEEDYPYKAIDGSCDTYRKNAKVVTIDDYEDVPLNDEKALQKAVANQPVSVAIE 871
            ++  W +K+ + Y    ++  R+++F +NL +I     + E  T+ + LN+FAD++ +E+   +L  +    RT+  +  ++ +  +  E     VDW   KK     VK+QGSCGSCWAFS + A+E    I       LSEQ+LVDC   Y N+GCNGG MD AFE++ DN G+   +DYPY A DG+C T  K      +  ++D+   DE  L + +  + V+VA++
Sbjct:   25 LYANWKMKYNRRYTNQRDEMYRYKVFTDNLNYIRAFYESPEEATFTLELNQFADMSQQEFAQTYLSLK--VPRTAKLNAANSNFQYKGAE-----VDWTDNKKVKYPAVKNQGSCGSCWAFSAVGALEINTDIELNRKYELSEQDLVDCSGPYDNDGCNGGWMDSAFEYVADN-GLAEAKDYPYTAKDGTCKTSVKR-PYTHVQGFKDIDSCDE--LAQTIQERTVAVAVD 244          
BLAST of FC877880 vs. ExPASy Swiss-Prot
Match: CATV_NPVOP (Viral cathepsin OS=Orgyia pseudotsugata multicapsid polyhedrosis virus GN=VCATH PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 1.070e-30
Identity = 83/229 (36.24%), Postives = 119/229 (51.97%), Query Frame = 2
Query:  197 FEAWLVKHGKAYNALGEKEKRFEIFKENLRFIDEHNSENRTYKVGLNRFADLTNEEYRSMHLGARFGAKRTSLKSKRSNR----YLPRVGEALPDSVDWRKKGAVAEVKDQGSCGSCWAFSTIAAVEGINKIVTGSLISLSEQELVDCDTSYNEGCNGGLMDYAFEFIIDNGGIDTEEDYPYKAIDGSCDTYRKNAKVVTIDDYEDVPLNDEKALQKAVANQPVSVAIE 871
            FE +L K  K Y++  EK  RF+IF+ NL  I   N  + T +  +N+F+DL+ EE  S + G        SL  +  N      L R  +  P   DWR+   V  VK+QG CG+CWAF+T+ ++E    I    LI+LSEQ+ +DCD   N GC+GGL+  AFE  ++ GG+  E DYPY+  +G C        V        + + +EK      A  P+ VAI+
Sbjct:   28 FEDFLHKFNKNYSSESEKLHRFKIFQHNLEEIINKNQNDSTAQYEINKFSDLSKEEAISKYTGL-------SLPHQTQNFCEVVILDRPPDRGPLEFDWRQFNKVTSVKNQGVCGACWAFATLGSLESQFAIKYNRLINLSEQQFIDCD-RVNAGCDGGLLHTAFESAMEMGGVQMESDYPYETANGQCRINPNRFVVGVRSCRRYIVMFEEKLKDLLRAVGPIPVAID 248          
BLAST of FC877880 vs. ExPASy Swiss-Prot
Match: CATV_NPVBS (Viral cathepsin OS=Buzura suppressaria nuclear polyhedrosis virus GN=VCATH PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 1.070e-30
Identity = 78/226 (34.51%), Postives = 119/226 (52.65%), Query Frame = 2
Query:  197 FEAWLVKHGKAYNALGEKEKRFEIFKENLRFIDEHNSENRTYKVGLNRFADLTNEEYRSMHLGARFGAKRTSLKSKRSNRYLPRVGEALPDSVDWRKKGAVAEVKDQGSCGSCWAFSTIAAVEGINKIVTGSLISLSEQELVDCDTSYNEGCNGGLMDYAFEFIIDNGGIDTEEDYPYKAIDGSCDTYRKNAKVVTIDD-YEDVPLNDEKALQKAVANQPVSVAIE 871
            FE +L  + K YN   EKE+RF IF++ L  I+  N  N +    +N+FADL+  E  S + G     + T+          P  G   P + DWR++  V  +K+Q +CG+CWAF+T+A++E    I     I LSEQ+++DCD   + GC+GGL+  AFE +I  G +  E +YPY  ++  C+       VV +   Y  V   +EK      A  P+ +AI+
Sbjct:   31 FETFLANYNKMYNDTSEKERRFSIFQQTLEEINYKNRLNDSAVYQINKFADLSKNEIISKYTGLNMPVQTTNFCKTIVIDQPPGKG---PLNFDWRQQNKVTSIKNQKACGACWAFATLASIESQYAIKNNVHIDLSEQQMIDCD-YVDMGCDGGLLHTAFEQMIQMGELVQEHEYPYAGVNKPCELRGDETGVVKVKGCYRYVVFREEKLKDLLRAVGPIPMAID 252          
BLAST of FC877880 vs. ExPASy Swiss-Prot
Match: CPP3_ENTHI (Cysteine proteinase 3 (Fragment) OS=Entamoeba histolytica GN=CPNP PE=1 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.398e-30
Identity = 86/233 (36.91%), Postives = 127/233 (54.51%), Query Frame = 2
Query:  197 FEAWLVKHGKAYNALGEKEKRFEIFKENLRFIDEHNSENRTYKVGLNR-FADLTNEEYRSMHLGARFGAKRTSLKSKRS---NRYLPRVGEALPDSVDWRKKGAVAEVKDQGSCGSCWAFSTIAAVEG---INKIVTGSLISLSEQELVDCD-TSYNEGCNGGLMDYAFEFIIDNGGIDTEEDYPYKAIDGSCDTYRKNAKVVTIDDYEDVPLNDEKALQKAVANQPVSVAIE 871
            F  W   + K + A+ E  +R  IF  N RF+ E N +  ++K+ ++  FA +TNEEYR++            LKSKR+   N  +  +    P+SVDWR +G V  ++DQ  CGSC+ F ++AA+EG   I K    + + LSE+ LV C   + N GCNGGL    +++II N G+  E DYPY   D +C T  K    +T   Y  VP N+E  L+ A++   V V+I+
Sbjct:    9 FNTWAANNNKHFTAV-EALRRRAIFNMNARFVAEFNKKG-SFKLSVDGPFAAMTNEEYRTL------------LKSKRTVEENGKVTYLNIQAPESVDWRAQGKVTPIRDQAQCGSCYTFGSLAALEGRLLIEKGGNANTLDLSEEHLVQCTRDNGNNGCNGGLGSNVYDYIIQN-GVAKESDYPYTGTDSTCKTNVKAFAKIT--GYNKVPRNNEAELKAALSQGLVDVSID 224          
BLAST of FC877880 vs. ExPASy Swiss-Prot
Match: CATV_NPVHZ (Viral cathepsin OS=Heliothis zea nuclear polyhedrosis virus GN=VCATH PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.398e-30
Identity = 83/245 (33.88%), Postives = 127/245 (51.84%), Query Frame = 2
Query:  179 DEVMAMFEAWLVKHGKAYNALGEKEKRFEIFKENLRFIDEHNSEN------------RTYKVGLNRFADLTNEEYRSMHLGARFGAKRTSLKSKRSNRYLPRVGEA-LPDSVDWRKKGAVAEVKDQGSCGSCWAFSTIAAVEGINKIVTGSLISLSEQELVDCDTSYNEGCNGGLMDYAFEFIIDNGGIDTEEDYPYKAIDGSCDTYRKNAKVVTIDDYEDVPLNDEKALQKAV-ANQPVSVAIE 871
            D+    F+ +L ++ K+Y+   E + R+ +FK+NL  I+  N EN             + + G+N+F+D T +E   +H    F    +   +   NR +    +  LPD  DWR    V  +KDQG CGSCWAF  I  +E    I    LI LSEQ+L+DCD   + GCNGGLM  AF+ ++  GG++TE DYPY+  +  C T       V ++      + DE  L++ V    PV++A++
Sbjct:   51 DQSEIYFKHFLQQYNKSYDDPKEYQYRYNVFKDNLNKINSQNRENLLNNKNNNDSLSTSAQFGVNKFSDKTPDEV--LHSNTGFFLNLSQHYTLCENRIVKGAPDIRLPDYYDWRDTNKVTPIKDQGVCGSCWAFVAIGNIESQYAIRHNKLIDLSEQQLLDCD-EVDLGCNGGLMHLAFQELLLMGGVETEADYPYQGSEQMC-TLDNRKIAVKLNSCFKYDIRDENKLKELVYTTGPVAIAVD 291          
BLAST of FC877880 vs. ExPASy Swiss-Prot
Match: CATV_NPVAC (Viral cathepsin OS=Autographa californica nuclear polyhedrosis virus GN=VCATH PE=1 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.398e-30
Identity = 80/225 (35.56%), Postives = 121/225 (53.78%), Query Frame = 2
Query:  197 FEAWLVKHGKAYNALGEKEKRFEIFKENLRFIDEHNSENRTYKVGLNRFADLTNEEYRSMHLGARFGAKRTSLKSKRSNRYLPRVGEALPDSVDWRKKGAVAEVKDQGSCGSCWAFSTIAAVEGINKIVTGSLISLSEQELVDCDTSYNEGCNGGLMDYAFEFIIDNGGIDTEEDYPYKAIDGSCDTYRKNAKVVTIDDYEDVPLNDEKALQKAVANQPVSVAIE 871
            FE ++ +  K Y +  EK +RF+IF+ NL  I   N +N + K  +N+F+DL+ +E  + + G     +  +          P  G   P   DWR+   V  VK+QG CG+CWAF+T+A++E    I    LI+LSEQ+++DCD   + GCNGGL+  AFE II  GG+  E DYPY+A + +C        V   D Y  + + +EK         P+ +AI+
Sbjct:   28 FEEFVHRFNKDYGSEVEKLRRFKIFQHNLNEIINKN-QNDSAKYEINKFSDLSKDETIAKYTGLSLPIQTQNFCKVIVLDQPPGKG---PLEFDWRRLNKVTSVKNQGMCGACWAFATLASLESQFAIKHNQLINLSEQQMIDCD-FVDAGCNGGLLHTAFEAIIKMGGVQLESDYPYEADNNNCRMNSNKFLVQVKDCYRYITVYEEKLKDLLRLVGPIPMAID 247          
BLAST of FC877880 vs. ExPASy Swiss-Prot
Match: CATL_BRUPA (Cathepsin L-like OS=Brugia pahangi PE=1 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.398e-30
Identity = 91/241 (37.76%), Postives = 132/241 (54.77%), Query Frame = 2
Query:  170 RTDDEVMAMFEAWLVKHGKAYNALGEKEKRFEIFKENLRFIDEHNSENR----TYKVGLNRFADLTNEEYRSMHLGARFGAKRTSLKSKR--SNRYLPRVGEALPDSVDWRKKGAVAEVKDQGSCGSCWAFSTIAAVEGINKIVTGSLISLSEQELVDCDTSY-NEGCNGGLMDYAFEFIIDNGGIDTEEDYPYKAIDGSCDTYRKNAKVVTIDDYEDVPLNDEKALQKAVANQ-PVSVAI 868
            R  +++   ++ ++   GK Y+   E   R  IF+ N    +  N +      +Y   LN  ADLT+EE+   + G R    +T L+ KR  S  Y     E LPD VDWR KGAV  V++QG CGSC+AF+T AA+E  +K +TG L+ LS Q +VDC  +  N GC+GG M  AF++     GI  E  YPY   +  C  ++++  VVT + + ++   DE AL+ AVA + PV V I
Sbjct:   82 RAMEKLETEWKDYVTALGKHYDQK-ENNFRMAIFESNELMTERINKKYEQGLVSYTTALNDLADLTDEEFMVRN-GLRL-PNQTDLRGKRQTSEFYRYDKSERLPDQVDWRTKGAVTPVRNQGECGSCYAFATAAALEAYHKQMTGRLLDLSPQNIVDCTRNLGNNGCSGGYMPTAFQY-ASRYGIAMESRYPYVGTEQRC-RWQQSIAVVTDNGFNEIQPGDELALKHAVAKRGPVVVGI 317          
BLAST of FC877880 vs. ExPASy Swiss-Prot
Match: CATV_NPVMC (Viral cathepsin OS=Mamestra configurata nucleopolyhedrovirus GN=VCATH PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.826e-30
Identity = 79/226 (34.96%), Postives = 121/226 (53.54%), Query Frame = 2
Query:  197 FEAWLVKHGKAYNALGEKEKRFEIFKENLRFIDEHNSENRTYKVGLNRFADLTNEEYRSMHLGARFGAKRTSLKSKRSNRYLPRVGEAL-PDSVDWRKKGAVAEVKDQGSCGSCWAFSTIAAVEGINKIVTGSLISLSEQELVDCDTSYNEGCNGGLMDYAFEFIIDNGGIDTEEDYPYKAIDGSCDTYRKNAKVVTIDDYEDVPLNDEKALQKAVANQPVSVAIE 871
            FE ++ ++ K Y++  EK+ R+ IF+ N+  I+  NS N +    +NRFAD+T  E  + H G   G    +         +   G+   P + DWR    V  VKDQG CG+CWAF+ + A+E    I    LI L+EQ+LVDCD   + GC+GGL+  A+E I+  GG++ E DYPYKA+   C        V   + Y  V L++E+         P+++A++
Sbjct:   40 FEKFISQYNKQYSSEDEKKYRYNIFRHNIESINAKNSRNDSAVYKINRFADMTKNEVVNRHTGLASGDIGANFCE---TIVVDGPGQRQRPANFDWRNYNKVTSVKDQGMCGACWAFAGLGALESQYAIKYDRLIDLAEQQLVDCD-FVDMGCDGGLIHTAYEQIMHIGGVEQEYDYPYKAVRLPCAVKPHKFAVGVRNCYRYVLLSEERLEDLLRHVGPIAIAVD 261          
BLAST of FC877880 vs. ExPASy Swiss-Prot
Match: ACP2_ENTHI (Cysteine proteinase ACP2 (Fragment) OS=Entamoeba histolytica GN=ACP2 PE=1 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 2.384e-30
Identity = 83/232 (35.78%), Postives = 130/232 (56.03%), Query Frame = 2
Query:  197 FEAWLVKHGKAYNALGEKEKRFEIFKENLRFIDEHNSENRTYKVGLNR-FADLTNEEYRSMHLGARFGAKRTSLKSKRS---NRYLPRVGEALPDSVDWRKKGAVAEVKDQGSCGSCWAFSTIAAVEG---INKIVTGSLISLSEQELVDCDTSYNEGCNGGLMDYAFEFIIDNGGIDTEEDYPYKAIDGSCDTYRKNAKVVTIDDYEDVPLNDEKALQKAVANQPVSVAIE 871
            F  W  K+ K + A+ EK +R  IF  N +F+D  N    ++K+ ++  FA +TNEEYR++            LKSKR+   N  +  +    P+SVDWRK+G V  ++DQ  CGSC+ F ++AA+EG   I K    + + LSE+ +     + N GCNGGL    +++II++ G+  E DYPY   D +C T  K+ + +T   Y  VP N+E  L+ A++   + V+I+
Sbjct:   12 FNTWASKNNKHFTAI-EKLRRRAIFNMNAKFVDSFNKIG-SFKLSVDGPFAAMTNEEYRTL------------LKSKRTTEENGQVKYLNIQAPESVDWRKEGKVTPLRDQAQCGSCYTFGSLAALEGRLLIEKGGDANTLDLSEEHMQCTRDNGNNGCNGGLGSNVYDYIIEH-GVAKESDYPYTGSDSTCKTNVKSFRKIT--GYTKVPRNNEAELKAALSQGLLDVSID 226          
The following BLAST results are available for this feature:
BLAST of FC877880 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 158
Match NameE-valueIdentityDescription
CATQ_RAT2.156e-3133.76Cathepsin Q OS=Rattus norvegicus GN=Ctsq PE=2 SV=1[more]
CATL1_PARTE2.156e-3135.06Cathepsin L 1 OS=Paramecium tetraurelia GN=GSPATT0... [more]
CATV_NPVOP1.070e-3036.24Viral cathepsin OS=Orgyia pseudotsugata multicapsi... [more]
CATV_NPVBS1.070e-3034.51Viral cathepsin OS=Buzura suppressaria nuclear pol... [more]
CPP3_ENTHI1.398e-3036.91Cysteine proteinase 3 (Fragment) OS=Entamoeba hist... [more]
CATV_NPVHZ1.398e-3033.88Viral cathepsin OS=Heliothis zea nuclear polyhedro... [more]
CATV_NPVAC1.398e-3035.56Viral cathepsin OS=Autographa californica nuclear ... [more]
CATL_BRUPA1.398e-3037.76Cathepsin L-like OS=Brugia pahangi PE=1 SV=1[more]
CATV_NPVMC1.826e-3034.96Viral cathepsin OS=Mamestra configurata nucleopoly... [more]
ACP2_ENTHI2.384e-3035.78Cysteine proteinase ACP2 (Fragment) OS=Entamoeba h... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA27DH08RM1 IVIA1 Citrus clementina cDNA clone IC0AAA27DH08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877880 ID=FC877880; Name=FC877880; organism=Citrus clementina; type=EST; length=881bp
ATCTTCTTCTCCCAAAAAGAAAAAAAAAAAGTTCTTTTCTCAAAAGATGG
GTTTGTTTAGATCACCAACCATGGCCATGTTTTTACTTTTTCTCTTCACT
GTTTCATCTGCCTTGGACATGTCGATTGTATCTTATGATAAAACCCATGA
GTCAAAATCTAGCAGCTGGAGGACCGACGATGAGGTTATGGCTATGTTCG
AGGCCTGGCTCGTGAAGCATGGCAAGGCTTATAACGCTTTGGGTGAAAAA
GAGAAGAGGTTTGAGATCTTTAAGGAAAATCTTAGGTTTATTGATGAACA
TAACTCAGAGAACCGGACCTACAAGGTTGGGTTGAACCGGTTTGCTGATT
TGACCAACGAGGAGTACCGGTCCATGCATCTGGGTGCACGCTTTGGTGCT
AAAAGGACTTCCTTGAAATCAAAGAGGAGCAACCGTTATCTGCCACGTGT
CGGCGAGGCGTTGCCGGACTCTGTTGATTGGAGGAAGAAAGGAGCTGTCG
CTGAAGTTAAAGATCAAGGAAGCTGTGGGAGTTGCTGGGCATTTTCAACC
ATTGCAGCTGTAGAGGGTATAAACAAGATTGTTACAGGTAGCCTGATCTC
ACTATCCGAGCAGGAGTTGGTGGATTGTGATACATCATATAATGAAGGAT
GTAATGGTGGTTTGATGGACTATGCATTCGAGTTCATTATTGATAATGGA
GGTATTGACACAGAAGAAGATTACCCCTACAAAGCCATTGATGGTAGCTG
TGACACATATCGGAAAAATGCCAAAGTAGTTACAATTGATGACTATGAAG
ATGTTCCCCTAAATGACGAGAAAGCTTTGCAAAAGGCAGTTGCAAATCAA
CCCGTGAGTGTTGCCATTGAAAGGAGGTGGC
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