FC877880

Overview
NameFC877880
Unique NameFC877880
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length881
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC877880 vs. ExPASy Swiss-Prot
Match: CATO_HUMAN (Cathepsin O OS=Homo sapiens GN=CTSO PE=1 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 6.091e-18
Identity = 63/198 (31.82%), Postives = 104/198 (52.53%), Query Frame = 2
Query:  248 KEKRFEIFKENL---RFIDE-HNSENRTYKVGLNRFADLTNEEYRSMHLGARFGAKRTSLKSKRSNRYLPRVGEALPDSVDWRKKGAVAEVKDQGSCGSCWAFSTIAAVEGINKIVTGSLISLSEQELVDCDTSYNE-GCNGGLMDYAFEFIID-NGGIDTEEDYPYKAIDGSCDTYRKNAKVVTIDDYEDVPLNDEK 823
            +E+    F+E+L   R+++    SEN T   G+N+F+ L  EE+++++L ++    +    S   +  +P V  +LP   DWR K  V +V++Q  CG CWAFS + AVE    I    L  LS Q+++DC  SYN  GCNGG    A  ++      +  + +YP+KA +G C  +  +    +I  Y     +D++
Sbjct:   37 REREAAAFRESLNRHRYLNSLFPSENSTAFYGINQFSYLFPEEFKAIYLRSK--PSKFPRYSAEVHMSIPNV--SLPLRFDWRDKQVVTQVRNQQMCGGCWAFSVVGAVESAYAIKGKPLEDLSVQQVIDC--SYNNYGCNGGSTLNALNWLNKMQVKLVKDSEYPFKAQNGLCHYFSGSHSGFSIKGYSAYDFSDQE 228          
BLAST of FC877880 vs. ExPASy Swiss-Prot
Match: PEPT1_PSOOV (Peptidase 1 OS=Psoroptes ovis PE=1 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.357e-17
Identity = 74/248 (29.84%), Postives = 117/248 (47.18%), Query Frame = 2
Query:   89 FLFTVSSALDMSIVSYDKTHESKSSSWRTDDEVMAMFEAWLVKHGKAYNALGEKEKRFEIFKENLRFIDEHNSENRTYKVGLNRFADLTNEEYRSMHLGA--RFGAKRTSLKSKRSNRYLPRVGEALPDSVDWRKKGAVAEVKDQGSCGSCWAFSTIAAVEGINKIVTGSLISLSEQELVDCDTSYNEGCNGGLMDYAFEFIIDNGGIDTEEDYPYKAIDGSCDTYRKNAKVVTIDDYEDV-PLNDEK 823
            F+  ++S L +S+V       +  S  RT +E    F     KH     A  E  + F    E++          +  K  +N+F+D++ EE+++ +L +   + A +         +        +P+ +D R  G V ++K+Q +CGSCWAFS +A VE          + LSEQELVDC + +  GC G  +     +I  NG ++ E+ YPYKA +G C   R NAK   I D   + P N +K
Sbjct:    3 FVLAIASLLVLSVVY------AYPSEIRTFEEFKKAFN----KHYVTPEAEQEARQNFLASLEHIE---------KAGKGRINQFSDMSLEEFKNQYLMSDQAYEALKKEFDLDAGAQACQIGAVNIPNEIDLRALGYVTKIKNQVACGSCWAFSGVATVESNYLSYDNVSLDLSEQELVDCASQH--GCGGDTVLNGLRYIQKNGVVE-EQSYPYKAREGRCQ--RPNAKRYGIKDLCQIYPPNGDK 226          
BLAST of FC877880 vs. ExPASy Swiss-Prot
Match: PEPT1_DERPT (Peptidase 1 OS=Dermatophagoides pteronyssinus GN=DERP1 PE=1 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 1.960e-16
Identity = 62/226 (27.43%), Postives = 106/226 (46.90%), Query Frame = 2
Query:  197 FEAWLVKHGKAYNALGEKEKRFEIFKENLRFIDEHNSENRTYKVGLNRFADLTNEEYRSMHL--GARFGAKRTSLKSKRSNRYLPRVGEALPDSVDWRKKGAVAEVKDQGSCGSCWAFSTIAAVEGINKIVTGSLISLSEQELVDCDTSYNEGCNGGLMDYAFEFIIDNGGIDTEEDYPYKAIDGSCDTYRKNAKVVTIDDYEDVPLNDEKALQKAVANQPVSVAI 868
            FE +     K+Y    ++E   + F E+++++  +          +N  +DL+ +E+++  L     F   +T              G A P  +D R+   V  ++ QG CGSCWAFS +AA E          + L+EQELVDC + +  GC+G  +    E+I  NG +  E  Y Y A + SC   R NA+   I +Y  +   +   +++A+A    ++A+
Sbjct:   26 FEEYKKAFNKSYATFEDEEAARKNFLESVKYVQSNGG-------AINHLSDLSLDEFKNRFLMSAEAFEHLKTQFDLNAETNACSINGNA-PAEIDLRQMRTVTPIRMQGGCGSCWAFSGVAATESAYLAYRNQSLDLAEQELVDCASQH--GCHGDTIPRGIEYIQHNGVVQ-ESYYRYVAREQSC--RRPNAQRFGISNYCQIYPPNVNKIREALAQTHSAIAV 238          
BLAST of FC877880 vs. ExPASy Swiss-Prot
Match: CYSP3_CARCN (Cysteine proteinase 3 (Fragment) OS=Carica candamarcensis PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 3.128e-14
Identity = 35/42 (83.33%), Postives = 38/42 (90.48%), Query Frame = 2
Query:  464 PDSVDWRKKGAVAEVKDQGSCGSCWAFSTIAAVEGINKIVTG 589
            P+S+DWRKKGAV  VK+QGSCGSCWAFSTIA VEGINKIV G
Sbjct:    2 PESIDWRKKGAVTPVKNQGSCGSCWAFSTIATVEGINKIVHG 43          
BLAST of FC877880 vs. ExPASy Swiss-Prot
Match: CYSP4_CARCN (Cysteine proteinase 4 (Fragment) OS=Carica candamarcensis PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 9.102e-14
Identity = 34/42 (80.95%), Postives = 37/42 (88.10%), Query Frame = 2
Query:  464 PDSVDWRKKGAVAEVKDQGSCGSCWAFSTIAAVEGINKIVTG 589
            P+S+DWRKKGAV  VK+QGSCGSCWAFSTI  VEGINKI TG
Sbjct:    2 PESIDWRKKGAVTPVKNQGSCGSCWAFSTIVTVEGINKIRTG 43          
BLAST of FC877880 vs. ExPASy Swiss-Prot
Match: CYSP2_CARCN (Cysteine proteinase 2 (Fragment) OS=Carica candamarcensis PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.553e-13
Identity = 34/42 (80.95%), Postives = 36/42 (85.71%), Query Frame = 2
Query:  464 PDSVDWRKKGAVAEVKDQGSCGSCWAFSTIAAVEGINKIVTG 589
            P SVDWR+KGAV  VKDQ  CGSCWAFST+A VEGINKIVTG
Sbjct:    2 PGSVDWRQKGAVTPVKDQNPCGSCWAFSTVATVEGINKIVTG 43          
BLAST of FC877880 vs. ExPASy Swiss-Prot
Match: CATB2_GIALA (Cathepsin B-like CP2 OS=Giardia lamblia GN=CP2 PE=1 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 1.717e-12
Identity = 64/204 (31.37%), Postives = 101/204 (49.51%), Query Frame = 2
Query:  305 SENRTYKVGL-NRFADLTNEEYRSMHLGARF--GAKRTSLKSKRSNRYLPRVGEALPDSVDWRKK--GAVAEVKDQGSCGSCWAFSTIAAVEGINKIVTG---SLISLSEQELVDCDTSYNEGCNGGLMDYAFEFIIDNGGIDTEEDYPYKA----IDGSCDTY----RKNAKVVTIDDYEDVPLNDEKALQKAVANQ-PVSVA 865
            S N  +K G+  RF  LT +E  S+ +   F   AK  + +   +++      + +P+S D+R++    + EV DQG CGSCWAFS++A   G  + V G     +  S Q +V CD   +  CNGG +   ++F+    G  T+E  PYK+    + G+C T          + T   Y+D  L D  A+ KA++   P+ VA
Sbjct:   26 SLNPRWKAGIPKRFEGLTKDEISSLLMPVSFLKNAKGAAPRGTFTDK------DDVPESFDFREEYPHCIPEVVDQGGCGSCWAFSSVATF-GDRRCVAGLDKKPVKYSPQYVVSCDHG-DMACNGGWLPNVWKFLTKT-GTTTDECVPYKSGSTTLRGTCPTKCADGSSKVHLATATSYKDYGL-DIPAMMKALSTSGPLQVA 219          
BLAST of FC877880 vs. ExPASy Swiss-Prot
Match: CATB3_GIALA (Cathepsin B-like CP3 OS=Giardia lamblia GN=CP3 PE=2 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 7.212e-11
Identity = 54/164 (32.93%), Postives = 79/164 (48.17%), Query Frame = 2
Query:  305 SENRTYKVGL-NRFADLTNEEYRSMHLGARFGAKRTSLKSKRSNRYLPR---VGEALPDSVDWRKK--GAVAEVKDQGSCGSCWAFSTIAAVEGINKIVTG---SLISLSEQELVDCDTSYNEGCNGGLMDYAFEFIIDNGGIDTEEDYPYKA----IDGSCDT 757
            S N  +K G+  RF  LT +E  S+ +   F         KR    +PR        PDS D+R++    + EV DQG CGSCWAFS++A+V G  +   G     +  S Q +V CD   +  C+GG +   + F+    G  T+E  PY++      G+C T
Sbjct:   26 SLNPRWKAGIPKRFEGLTKDEISSLLMPVSF--------LKRDRAAVPRGTVSATQAPDSFDFREEYPHCIPEVVDQGGCGSCWAFSSVASV-GDRRCFAGLDKKAVKYSPQYVVSCDRG-DMACDGGWLPSVWRFLTKT-GTTTDECVPYQSGSTGARGTCPT 178          
The following BLAST results are available for this feature:
BLAST of FC877880 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 158
Match NameE-valueIdentityDescription
CATO_HUMAN6.091e-1831.82Cathepsin O OS=Homo sapiens GN=CTSO PE=1 SV=1[more]
PEPT1_PSOOV1.357e-1729.84Peptidase 1 OS=Psoroptes ovis PE=1 SV=1[more]
PEPT1_DERPT1.960e-1627.43Peptidase 1 OS=Dermatophagoides pteronyssinus GN=D... [more]
CYSP3_CARCN3.128e-1483.33Cysteine proteinase 3 (Fragment) OS=Carica candama... [more]
CYSP4_CARCN9.102e-1480.95Cysteine proteinase 4 (Fragment) OS=Carica candama... [more]
CYSP2_CARCN1.553e-1380.95Cysteine proteinase 2 (Fragment) OS=Carica candama... [more]
CATB2_GIALA1.717e-1231.37Cathepsin B-like CP2 OS=Giardia lamblia GN=CP2 PE=... [more]
CATB3_GIALA7.212e-1132.93Cathepsin B-like CP3 OS=Giardia lamblia GN=CP3 PE=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionIC0AAA27DH08RM1 IVIA1 Citrus clementina cDNA clone IC0AAA27DH08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877880 ID=FC877880; Name=FC877880; organism=Citrus clementina; type=EST; length=881bp
ATCTTCTTCTCCCAAAAAGAAAAAAAAAAAGTTCTTTTCTCAAAAGATGG
GTTTGTTTAGATCACCAACCATGGCCATGTTTTTACTTTTTCTCTTCACT
GTTTCATCTGCCTTGGACATGTCGATTGTATCTTATGATAAAACCCATGA
GTCAAAATCTAGCAGCTGGAGGACCGACGATGAGGTTATGGCTATGTTCG
AGGCCTGGCTCGTGAAGCATGGCAAGGCTTATAACGCTTTGGGTGAAAAA
GAGAAGAGGTTTGAGATCTTTAAGGAAAATCTTAGGTTTATTGATGAACA
TAACTCAGAGAACCGGACCTACAAGGTTGGGTTGAACCGGTTTGCTGATT
TGACCAACGAGGAGTACCGGTCCATGCATCTGGGTGCACGCTTTGGTGCT
AAAAGGACTTCCTTGAAATCAAAGAGGAGCAACCGTTATCTGCCACGTGT
CGGCGAGGCGTTGCCGGACTCTGTTGATTGGAGGAAGAAAGGAGCTGTCG
CTGAAGTTAAAGATCAAGGAAGCTGTGGGAGTTGCTGGGCATTTTCAACC
ATTGCAGCTGTAGAGGGTATAAACAAGATTGTTACAGGTAGCCTGATCTC
ACTATCCGAGCAGGAGTTGGTGGATTGTGATACATCATATAATGAAGGAT
GTAATGGTGGTTTGATGGACTATGCATTCGAGTTCATTATTGATAATGGA
GGTATTGACACAGAAGAAGATTACCCCTACAAAGCCATTGATGGTAGCTG
TGACACATATCGGAAAAATGCCAAAGTAGTTACAATTGATGACTATGAAG
ATGTTCCCCTAAATGACGAGAAAGCTTTGCAAAAGGCAGTTGCAAATCAA
CCCGTGAGTGTTGCCATTGAAAGGAGGTGGC
back to top