FC877880

Overview
NameFC877880
Unique NameFC877880
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length881
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13920 contig Ccv1_Contig13920:42..920. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC877880 vs. ExPASy Swiss-Prot
Match: ALEU_ARATH (Thiol protease aleurain OS=Arabidopsis thaliana GN=ALEU PE=1 SV=2)

HSP 1 Score: 172.555 bits (436), Expect = 2.715e-42
Identity = 100/227 (44.05%), Postives = 136/227 (59.91%), Query Frame = 2
Query:  197 FEAWLVKHGKAYNALGEKEKRFEIFKENLRFIDEHNSENRTYKVGLNRFADLTNEEYRSMHLGARFGAKRTSLKSKRSNRYLPRVGEALPDSVDWRKKGAVAEVKDQGSCGSCWAFSTIAAVEGINKIVTGSLISLSEQELVDCDTSYNE-GCNGGLMDYAFEFIIDNGGIDTEEDYPYKAIDGSCDTYRKNAKVVTIDDYEDVPLNDEKALQKAVA-NQPVSVAIE 871
            F  +  ++GK Y  + E + RF IFKENL  I   N +  +YK+G+N+FADLT +E++   LGA   A+  S   K S++       ALP++ DWR+ G V+ VKDQG CGSCW FST  A+E       G  ISLSEQ+LVDC  ++N  GCNGGL   AFE+I  NGG+DTE+ YPY   D +C    +N  V  ++   ++ L  E  L+ AV   +PVS+A E
Sbjct:   59 FARFTHRYGKKYQNVEEMKLRFSIFKENLDLIRSTNKKGLSYKLGVNQFADLTWQEFQRTKLGA---AQNCSATLKGSHKVTEA---ALPETKDWREDGIVSPVKDQGGCGSCWTFSTTGALEAAYHQAFGKGISLSEQQLVDCAGAFNNYGCNGGLPSQAFEYIKSNGGLDTEKAYPYTGKDETCKFSAENVGVQVLNSV-NITLGAEDELKHAVGLVRPVSIAFE 278          
BLAST of FC877880 vs. ExPASy Swiss-Prot
Match: ERVC_TABDI (Ervatamin-C OS=Tabernaemontana divaricata PE=1 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 3.546e-42
Identity = 84/137 (61.31%), Postives = 107/137 (78.10%), Query Frame = 2
Query:  461 LPDSVDWRKKGAVAEVKDQGSCGSCWAFSTIAAVEGINKIVTGSLISLSEQELVDCDTSYNEGCNGGLMDYAFEFIIDNGGIDTEEDYPYKAIDGSCDTYRKNAKVVTIDDYEDVPLNDEKALQKAVANQPVSVAIE 871
            LP+ +DWRKKGAV  VK+QGSCGSCWAFST++ VE IN+I TG+LISLSEQELVDCD   N GC GG   +A+++II+NGGIDT+ +YPYKA+ G C   +  +KVV+ID Y  VP  +E AL++AVA QP +VAI+
Sbjct:    1 LPEQIDWRKKGAVTPVKNQGSCGSCWAFSTVSTVESINQIRTGNLISLSEQELVDCDKK-NHGCLGGAFVFAYQYIINNGGIDTQANYPYKAVQGPC---QAASKVVSIDGYNGVPFCNEXALKQAVAVQPSTVAID 133          
BLAST of FC877880 vs. ExPASy Swiss-Prot
Match: CATK_HUMAN (Cathepsin K OS=Homo sapiens GN=CTSK PE=1 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 7.900e-42
Identity = 100/232 (43.10%), Postives = 135/232 (58.19%), Query Frame = 2
Query:  197 FEAWLVKHGKAYNALGEKEKRFEIFKENLRFIDEHNSEN----RTYKVGLNRFADLTNEEYRSMHLGARFGAKRTSLKSKRSNR--YLPRVGEALPDSVDWRKKGAVAEVKDQGSCGSCWAFSTIAAVEGINKIVTGSLISLSEQELVDCDTSYNEGCNGGLMDYAFEFIIDNGGIDTEEDYPYKAIDGSCDTYRKNAKVVTIDDYEDVPLNDEKALQKAVAN-QPVSVAIE 871
            +E W   H K YN   ++  R  I+++NL++I  HN E      TY++ +N   D+T+EE      G +       L   RSN   Y+P      PDSVD+RKKG V  VK+QG CGSCWAFS++ A+EG  K  TG L++LS Q LVDC  S N+GC GG M  AF+++  N GID+E+ YPY   + SC  Y    K      Y ++P  +EKAL++AVA   PVSVAI+
Sbjct:   26 WELWKKTHRKQYNNKVDEISRRLIWEKNLKYISIHNLEASLGVHTYELAMNHLGDMTSEEVVQKMTGLK-----VPLSHSRSNDTLYIPEWEGRAPDSVDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDC-VSENDGCGGGYMTNAFQYVQKNRGIDSEDAYPYVGQEESC-MYNPTGKAAKCRGYREIPEGNEKALKRAVARVGPVSVAID 250          
BLAST of FC877880 vs. ExPASy Swiss-Prot
Match: CATS_RAT (Cathepsin S OS=Rattus norvegicus GN=Ctss PE=2 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 6.688e-41
Identity = 99/217 (45.62%), Postives = 128/217 (58.99%), Query Frame = 2
Query:  245 EKEKRFEIFKENLRFIDEHNSEN----RTYKVGLNRFADLTNEEYRSMHLGARFGAKRTSLKSKRSNRYLPRVGEALPDSVDWRKKGAVAEVKDQGSCGSCWAFSTIAAVEGINKIVTGSLISLSEQELVDCDTSY---NEGCNGGLMDYAFEFIIDNGGIDTEEDYPYKAIDGSCDTYRKNAKVVTIDDYEDVPLNDEKALQKAVANQ-PVSVAIE 871
            E++ R  I+++NL+FI  HN E+     +Y VG+N   D+T EE          G+ R      RS        + LPDSVDWR+KG V  VK QGSCGSCWAFS   A+EG  K+ TG L+SLS Q LVDC T     N+GC GG M  AF++IID   ID+E  YPYKA+D  C  Y    +  T   Y ++P  DE+AL++AVA + PVSV I+
Sbjct:   42 EEDVRRLIWEKNLKFIMLHNLEHSMGMHSYSVGMNHMGDMTPEEVIGY-----MGSLRIPRPWNRSGTLKSSSNQTLPDSVDWREKGCVTNVKYQGSCGSCWAFSAEGALEGQLKLKTGKLVSLSAQNLVDCSTEEKYGNKGCGGGFMTEAFQYIIDT-SIDSEASYPYKAMDEKC-LYDPKNRAATCSRYIELPFGDEEALKEAVATKGPVSVGID 251          
BLAST of FC877880 vs. ExPASy Swiss-Prot
Match: CATK_RABIT (Cathepsin K OS=Oryctolagus cuniculus GN=CTSK PE=1 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 1.141e-40
Identity = 96/230 (41.74%), Postives = 132/230 (57.39%), Query Frame = 2
Query:  197 FEAWLVKHGKAYNALGEKEKRFEIFKENLRFIDEHNSEN----RTYKVGLNRFADLTNEEYRSMHLGARFGAKRTSLKSKRSNRYLPRVGEALPDSVDWRKKGAVAEVKDQGSCGSCWAFSTIAAVEGINKIVTGSLISLSEQELVDCDTSYNEGCNGGLMDYAFEFIIDNGGIDTEEDYPYKAIDGSCDTYRKNAKVVTIDDYEDVPLNDEKALQKAVAN-QPVSVAIE 871
            +E W   + K YN+  ++  R  I+++NL+ I  HN E      TY++ +N   D+T+EE      G +    R+         Y+P      PDS+D+RKKG V  VK+QG CGSCWAFS++ A+EG  K  TG L++LS Q LVDC  S N GC GG M  AF+++  N GID+E+ YPY   D SC  Y    K      Y ++P  +EKAL++AVA   PVSVAI+
Sbjct:   26 WELWKKTYSKQYNSKVDEISRRLIWEKNLKHISIHNLEASLGVHTYELAMNHLGDMTSEEVVQKMTGLKVPPSRSH---SNDTLYIPDWEGRTPDSIDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDC-VSENYGCGGGYMTNAFQYVQRNRGIDSEDAYPYVGQDESC-MYNPTGKAAKCRGYREIPEGNEKALKRAVARVGPVSVAID 250          
BLAST of FC877880 vs. ExPASy Swiss-Prot
Match: CATK_PIG (Cathepsin K OS=Sus scrofa GN=CTSK PE=2 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 1.490e-40
Identity = 99/245 (40.41%), Postives = 141/245 (57.55%), Query Frame = 2
Query:  158 SSSWRTDDEVMAMFEAWLVKHGKAYNALGEKEKRFEIFKENLRFIDEHNSEN----RTYKVGLNRFADLTNEEYRSMHLGARFGAKRTSLKSKRSNR--YLPRVGEALPDSVDWRKKGAVAEVKDQGSCGSCWAFSTIAAVEGINKIVTGSLISLSEQELVDCDTSYNEGCNGGLMDYAFEFIIDNGGIDTEEDYPYKAIDGSCDTYRKNAKVVTIDDYEDVPLNDEKALQKAVAN-QPVSVAIE 871
            SS+   ++ +   +E W   + K YN+  ++  R  I+++NL+ I  HN E      TY++ +N   D+T+EE      G +     +     RSN   Y+P      PDS+D+RKKG V  VK+QG CGSCWAFS++ A+EG  K  TG L++LS Q LVDC  S N+GC GG M  AF+++  N GID+E+ YPY   D +C  Y    K      Y ++P  +EKAL++AVA   PVSVAI+
Sbjct:   14 SSALYPEEILDTQWELWKKTYRKQYNSKVDEISRRLIWEKNLKHISIHNLEASLGVHTYELAMNHLGDMTSEEVVQKMTGLKVPPSHS-----RSNDTLYIPDWEGRTPDSIDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDC-VSENDGCGGGYMTNAFQYVQKNRGIDSEDAYPYVGQDENC-MYNPTGKAAKCRGYREIPEGNEKALKRAVARVGPVSVAID 251          
BLAST of FC877880 vs. ExPASy Swiss-Prot
Match: CATK_CANFA (Cathepsin K OS=Canis familiaris GN=CTSK PE=2 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 1.946e-40
Identity = 97/232 (41.81%), Postives = 135/232 (58.19%), Query Frame = 2
Query:  197 FEAWLVKHGKAYNALGEKEKRFEIFKENLRFIDEHNSEN----RTYKVGLNRFADLTNEEYRSMHLGARFGAKRTSLKSKRSNR--YLPRVGEALPDSVDWRKKGAVAEVKDQGSCGSCWAFSTIAAVEGINKIVTGSLISLSEQELVDCDTSYNEGCNGGLMDYAFEFIIDNGGIDTEEDYPYKAIDGSCDTYRKNAKVVTIDDYEDVPLNDEKALQKAVAN-QPVSVAIE 871
            ++ W   + K YN+  ++  R  I+++NL+ I  HN E      TY++ +N   D+T+EE      G +     +     RSN   Y+P      PDSVD+RKKG V  VK+QG CGSCWAFS++ A+EG  K  TG L++LS Q LVDC  S N+GC GG M  AF+++  N GID+E+ YPY   D SC  Y    K      Y ++P  +EKAL++AVA   P+SVAI+
Sbjct:   27 WDLWKKTYRKQYNSKVDELSRRLIWEKNLKHISIHNLEASLGVHTYELAMNHLGDMTSEEVVQKMTGLKVPPSHS-----RSNDTLYIPDWESRAPDSVDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDC-VSENDGCGGGYMTNAFQYVQKNRGIDSEDAYPYVGQDESC-MYNPTGKAAKCRGYREIPEGNEKALKRAVARVGPISVAID 251          
BLAST of FC877880 vs. ExPASy Swiss-Prot
Match: CATL2_HUMAN (Cathepsin L2 OS=Homo sapiens GN=CTSL2 PE=1 SV=2)

HSP 1 Score: 165.622 bits (418), Expect = 3.319e-40
Identity = 102/238 (42.86%), Postives = 133/238 (55.88%), Query Frame = 2
Query:  176 DDEVMAMFEAWLVKHGKAYNALGEKEKRFEIFKENLRFIDEHNSENRTYKVG----LNRFADLTNEEYRSMHLGARFGAKRTSLKSKRSNRYLPRVGEALPDSVDWRKKGAVAEVKDQGSCGSCWAFSTIAAVEGINKIVTGSLISLSEQELVDCDTSY-NEGCNGGLMDYAFEFIIDNGGIDTEEDYPYKAIDGSCDTYRKNAKVVTIDDYEDVPLNDEKALQKAVAN-QPVSVAIE 871
            D  +   +  W   H + Y A  E+  R  ++++N++ I+ HN E    K G    +N F D+TNEE+R M +G     K    K  R   +L      LP SVDWRKKG V  VK+Q  CGSCWAFS   A+EG     TG L+SLSEQ LVDC     N+GCNGG M  AF+++ +NGG+D+EE YPY A+D  C  YR    V     +  V    EKAL KAVA   P+SVA++
Sbjct:   22 DQNLDTKWYQWKATHRRLYGA-NEEGWRRAVWEKNMKMIELHNGEYSQGKHGFTMAMNAFGDMTNEEFRQM-MGCFRNQKFRKGKVFREPLFLD-----LPKSVDWRKKGYVTPVKNQKQCGSCWAFSATGALEGQMFRKTGKLVSLSEQNLVDCSRPQGNQGCNGGFMARAFQYVKENGGLDSEESYPYVAVDEIC-KYRPENSVANDTGFTVVAPGKEKALMKAVATVGPISVAMD 251          
BLAST of FC877880 vs. ExPASy Swiss-Prot
Match: CATH_HUMAN (Cathepsin H OS=Homo sapiens GN=CTSH PE=1 SV=4)

HSP 1 Score: 163.696 bits (413), Expect = 1.261e-39
Identity = 95/228 (41.67%), Postives = 138/228 (60.53%), Query Frame = 2
Query:  197 FEAWLVKHGKAYNALGEKEKRFEIFKENLRFIDEHNSENRTYKVGLNRFADLTNEEYRSMHLGARFGAKRTSLKSKRSNRYLPRVGEALPDSVDWRKKGA-VAEVKDQGSCGSCWAFSTIAAVEGINKIVTGSLISLSEQELVDCDTSY-NEGCNGGLMDYAFEFIIDNGGIDTEEDYPYKAIDGSCDTYRKNAKVVTIDDYEDVPLNDEKALQKAVA-NQPVSVAIE 871
            F++W+ KH K Y+   E   R + F  N R I+ HN+ N T+K+ LN+F+D++  E +  +L +    +  +  + +SN YL   G   P SVDWRKKG  V+ VK+QG+CGSCW FST  A+E    I TG ++SL+EQ+LVDC   + N GC GGL   AFE+I+ N GI  E+ YPY+  DG C  ++    +  + D  ++ + DE+A+ +AVA   PVS A E
Sbjct:   35 FKSWMSKHRKTYST-EEYHHRLQTFASNWRKINAHNNGNHTFKMALNQFSDMSFAEIKHKYLWS----EPQNCSATKSN-YLRGTGP-YPPSVDWRKKGNFVSPVKNQGACGSCWTFSTTGALESAIAIATGKMLSLAEQQLVDCAQDFNNHGCQGGLPSQAFEYILYNKGIMGEDTYPYQGKDGYC-KFQPGKAIGFVKDVANITIYDEEAMVEAVALYNPVSFAFE 254          
BLAST of FC877880 vs. ExPASy Swiss-Prot
Match: CYSP2_HOMAM (Digestive cysteine proteinase 2 OS=Homarus americanus GN=LCP2 PE=2 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 2.151e-39
Identity = 95/227 (41.85%), Postives = 136/227 (59.91%), Query Frame = 2
Query:  215 KHGKAYNALGEKEKRFEIFKENLRFIDEHNSENR----TYKVGLNRFADLTNEEYRSMHLGARFGAKRTSLKSKRSNRYLPRVGEALPDS--VDWRKKGAVAEVKDQGSCGSCWAFSTIAAVEGINKIVTGSLISLSEQELVDCDTSYN-EGCNGGLMDYAFEFIIDNGGIDTEEDYPYKAIDGSCDTYRKNAKVVTIDDYEDVPLNDEKALQKAVAN-QPVSVAIE 871
            K+G+ Y    E   R  IF++N ++I+E N +      T+ + +N+F D+T EE+ ++  G          +S   + + P+  E  P +  VDWR KGAV  VKDQG CGSCWAFST  ++EG + + TGSLISL+EQ+LVDC   Y  +GCNGG M+ AF++I  N GIDTE  YPY+A DGSC  +  N+   T   + ++    E  LQ+AV +  P+SV I+
Sbjct:   26 KYGRQYVDAEEDSYRRVIFEQNQKYIEEFNKKYENGEVTFNLAMNKFGDMTLEEFNAVMKG------NIPRRSAPVSVFYPKK-ETGPQATEVDWRTKGAVTPVKDQGQCGSCWAFSTTGSLEGQHFLKTGSLISLAEQQLVDCSRPYGPQGCNGGWMNDAFDYIKANNGIDTEAAYPYEARDGSC-RFDSNSVAATCSGHTNIASGSETGLQQAVRDIGPISVTID 244          
The following BLAST results are available for this feature:
BLAST of FC877880 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 158
Match NameE-valueIdentityDescription
ALEU_ARATH2.715e-4244.05Thiol protease aleurain OS=Arabidopsis thaliana GN... [more]
ERVC_TABDI3.546e-4261.31Ervatamin-C OS=Tabernaemontana divaricata PE=1 SV=... [more]
CATK_HUMAN7.900e-4243.10Cathepsin K OS=Homo sapiens GN=CTSK PE=1 SV=1[more]
CATS_RAT6.688e-4145.62Cathepsin S OS=Rattus norvegicus GN=Ctss PE=2 SV=1[more]
CATK_RABIT1.141e-4041.74Cathepsin K OS=Oryctolagus cuniculus GN=CTSK PE=1 ... [more]
CATK_PIG1.490e-4040.41Cathepsin K OS=Sus scrofa GN=CTSK PE=2 SV=1[more]
CATK_CANFA1.946e-4041.81Cathepsin K OS=Canis familiaris GN=CTSK PE=2 SV=1[more]
CATL2_HUMAN3.319e-4042.86Cathepsin L2 OS=Homo sapiens GN=CTSL2 PE=1 SV=2[more]
CATH_HUMAN1.261e-3941.67Cathepsin H OS=Homo sapiens GN=CTSH PE=1 SV=4[more]
CYSP2_HOMAM2.151e-3941.85Digestive cysteine proteinase 2 OS=Homarus america... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA27DH08RM1 IVIA1 Citrus clementina cDNA clone IC0AAA27DH08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877880 ID=FC877880; Name=FC877880; organism=Citrus clementina; type=EST; length=881bp
ATCTTCTTCTCCCAAAAAGAAAAAAAAAAAGTTCTTTTCTCAAAAGATGG
GTTTGTTTAGATCACCAACCATGGCCATGTTTTTACTTTTTCTCTTCACT
GTTTCATCTGCCTTGGACATGTCGATTGTATCTTATGATAAAACCCATGA
GTCAAAATCTAGCAGCTGGAGGACCGACGATGAGGTTATGGCTATGTTCG
AGGCCTGGCTCGTGAAGCATGGCAAGGCTTATAACGCTTTGGGTGAAAAA
GAGAAGAGGTTTGAGATCTTTAAGGAAAATCTTAGGTTTATTGATGAACA
TAACTCAGAGAACCGGACCTACAAGGTTGGGTTGAACCGGTTTGCTGATT
TGACCAACGAGGAGTACCGGTCCATGCATCTGGGTGCACGCTTTGGTGCT
AAAAGGACTTCCTTGAAATCAAAGAGGAGCAACCGTTATCTGCCACGTGT
CGGCGAGGCGTTGCCGGACTCTGTTGATTGGAGGAAGAAAGGAGCTGTCG
CTGAAGTTAAAGATCAAGGAAGCTGTGGGAGTTGCTGGGCATTTTCAACC
ATTGCAGCTGTAGAGGGTATAAACAAGATTGTTACAGGTAGCCTGATCTC
ACTATCCGAGCAGGAGTTGGTGGATTGTGATACATCATATAATGAAGGAT
GTAATGGTGGTTTGATGGACTATGCATTCGAGTTCATTATTGATAATGGA
GGTATTGACACAGAAGAAGATTACCCCTACAAAGCCATTGATGGTAGCTG
TGACACATATCGGAAAAATGCCAAAGTAGTTACAATTGATGACTATGAAG
ATGTTCCCCTAAATGACGAGAAAGCTTTGCAAAAGGCAGTTGCAAATCAA
CCCGTGAGTGTTGCCATTGAAAGGAGGTGGC
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