FC877880

Overview
NameFC877880
Unique NameFC877880
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length881
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC877880 vs. ExPASy Swiss-Prot
Match: CATLL_PHACE (Cathepsin L-like proteinase OS=Phaedon cochleariae PE=2 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 2.810e-39
Identity = 96/238 (40.34%), Postives = 142/238 (59.66%), Query Frame = 2
Query:  173 TDDEVMAMFEAWLVKHGKAYNALGEKEKRFEIFKENLRFIDEHNSE----NRTYKVGLNRFADLTNEEYRSMHLGARFGAKRTSLKSKRSNRYLPRVGEALPDSVDWRKKGAVAEVKDQGSCGSCWAFSTIAAVEGINKIVTGSLISLSEQELVDCDTSY-NEGCNGGLMDYAFEFIIDNGGIDTEEDYPYKAIDGSCDTYRKNAKVVTIDDYEDVPLNDEKALQKAVAN-QPVSVAI 868
            +D E+ A F+     H + Y +L E++ RF IF++ LR I EHN +      TY + +N+F+D+T+EE+R M +  +  A R +L+          VG A P+S+DWR KG V  V++QG CGSCWA ST AA+E  + I +GS + LS Q+LVDC TSY N GCNGG     FE++ DN G++++ DYPY   +  C    K+  VV +  Y+ V  + E +L++AV    P+S  +
Sbjct:   18 SDQELWADFKK---THARTYKSLREEKLRFNIFQDTLRQIAEHNVKYENGESTYYLAINKFSDITDEEFRDMLM--KNEASRPNLEGLEVADLT--VGAA-PESIDWRSKGVVLPVRNQGECGSCWALSTAAAIESQSAIKSGSKVPLSPQQLVDCSTSYGNHGCNGGFAVNGFEYVKDN-GLESDADYPYSGKEDKCKANDKSRSVVELTGYKKVTAS-ETSLKEAVGTIGPISAVV 245          
BLAST of FC877880 vs. ExPASy Swiss-Prot
Match: CATH_RAT (Cathepsin H OS=Rattus norvegicus GN=Ctsh PE=1 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 2.810e-39
Identity = 93/228 (40.79%), Postives = 137/228 (60.09%), Query Frame = 2
Query:  197 FEAWLVKHGKAYNALGEKEKRFEIFKENLRFIDEHNSENRTYKVGLNRFADLTNEEYRSMHLGARFGAKRTSLKSKRSNRYLPRVGEALPDSVDWRKKG-AVAEVKDQGSCGSCWAFSTIAAVEGINKIVTGSLISLSEQELVDCDTSY-NEGCNGGLMDYAFEFIIDNGGIDTEEDYPYKAIDGSCDTYRKNAKVVTIDDYEDVPLNDEKALQKAVA-NQPVSVAIE 871
            F +W+ +H K Y++  E   R ++F  N R I  HN  N T+K+GLN+F+D++  E +  +L +    +  +  + +SN YL   G   P S+DWRKKG  V+ VK+QG+CGSCW FST  A+E    I +G +++L+EQ+LVDC  ++ N GC GGL   AFE+I+ N GI  E+ YPY   +G C  +     V  + +  ++ LNDE A+ +AVA   PVS A E
Sbjct:   33 FTSWMKQHQKTYSSR-EYSHRLQVFANNWRKIQAHNQRNHTFKMGLNQFSDMSFAEIKHKYLWS----EPQNCSATKSN-YLRGTGP-YPSSMDWRKKGNVVSPVKNQGACGSCWTFSTTGALESAVAIASGKMMTLAEQQLVDCAQNFNNHGCQGGLPSQAFEYILYNKGIMGEDSYPYIGKNGQC-KFNPEKAVAFVKNVVNITLNDEAAMVEAVALYNPVSFAFE 252          
BLAST of FC877880 vs. ExPASy Swiss-Prot
Match: CATH_MOUSE (Cathepsin H OS=Mus musculus GN=Ctsh PE=2 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 8.176e-39
Identity = 93/228 (40.79%), Postives = 136/228 (59.65%), Query Frame = 2
Query:  197 FEAWLVKHGKAYNALGEKEKRFEIFKENLRFIDEHNSENRTYKVGLNRFADLTNEEYRSMHLGARFGAKRTSLKSKRSNRYLPRVGEALPDSVDWRKKG-AVAEVKDQGSCGSCWAFSTIAAVEGINKIVTGSLISLSEQELVDCDTSY-NEGCNGGLMDYAFEFIIDNGGIDTEEDYPYKAIDGSCDTYRKNAKVVTIDDYEDVPLNDEKALQKAVA-NQPVSVAIE 871
            F++W+ +H K Y+++ E   R ++F  N R I  HN  N T+K+ LN+F+D++  E +   L +    +  +  + +SN YL   G   P S+DWRKKG  V+ VK+QG+C SCW FST  A+E    I +G ++SL+EQ+LVDC  ++ N GC GGL   AFE+I+ N GI  E+ YPY   D SC  +     V  + +  ++ LNDE A+ +AVA   PVS A E
Sbjct:   33 FKSWMKQHQKTYSSV-EYNHRLQMFANNWRKIQAHNQRNHTFKMALNQFSDMSFAEIKHKFLWS----EPQNCSATKSN-YLRGTGP-YPSSMDWRKKGNVVSPVKNQGACASCWTFSTTGALESAVAIASGKMLSLAEQQLVDCAQAFNNHGCKGGLPSQAFEYILYNKGIMEEDSYPYIGKDSSC-RFNPQKAVAFVKNVVNITLNDEAAMVEAVALYNPVSFAFE 252          
BLAST of FC877880 vs. ExPASy Swiss-Prot
Match: CFAD_DICDI (Counting factor associated protein D OS=Dictyostelium discoideum GN=cfaD PE=1 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.821e-38
Identity = 82/234 (35.04%), Postives = 134/234 (57.26%), Query Frame = 2
Query:  176 DDEVMAMFEAWLVKHGKAYNALGEKEKRFEIFKENLRFIDEHNSENRTYKVGLNRFADLTNEEYRSMHLGARFGAKRTSLKSKRSNRYLPRVGEALPDSVDWRKKGAVAEVKDQGSCGSCWAFSTIAAVEGINKIVTGSLISLSEQELVDCD-TSYNEGCNGGLMDYAFEFIIDNGGIDTEEDYPYKAIDGSCDTYRKNAKVVTIDDYEDVPLNDEKALQKAVANQ-PVSVAIE 871
            +++   +F+ +  ++ K Y++  E ++RF  FK   + I  HN++  +YK+G+N +ADL+N+E+ ++          T   S   +  L     ++P +VDWR +  V  VKDQG CGSCW F +  ++EG N +  G L+SLSEQ+LVDC   + ++GC GG    AF+++++ G + TE +YPY   +G C         V+I  Y +V    E ALQ A+A   PV++AI+
Sbjct:  218 EEQASNLFKEYKAQYNKEYSSQDEHDERFINFKAARKIIATHNAKESSYKLGMNHYADLSNKEFNTLVKPKVARPSVTGADSVHDDESL----RSIPSTVDWRNQNCVTPVKDQGICGSCWTFGSTGSLEGTNCVTNGELVSLSEQQLVDCAILTGSQGCGGGFASSAFQYVMEIGSLATESNYPYLMQNGLCRDRTVTPSGVSITGYVNVTSGSESALQNAIATTGPVAIAID 447          
BLAST of FC877880 vs. ExPASy Swiss-Prot
Match: MEX2_JACME (Chymomexicain OS=Jacaratia mexicana PE=1 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 9.039e-38
Identity = 75/138 (54.35%), Postives = 94/138 (68.12%), Query Frame = 2
Query:  464 PDSVDWRKKGAVAEVKDQGSCGSCWAFSTIAAVEGINKIVTGSLISLSEQELVDCDTSYNEGCNGGLMDYAFEFIIDNGGIDTEEDYPYKAIDGSCDTYRKNAKVVTIDDYEDVPLNDEKALQKAVANQPVSVAIERR 877
            P+S+DWR KGAV  VK+Q  CGSCWAFST+A VEGINKI TG LISLSEQEL+DCD   + GC GG    + +++ DNGG+ TE++YPY+   G C    K    V I  Y+ VP NDE +L + + NQPVSV  E +
Sbjct:    2 PESIDWRDKGAVTPVKNQNPCGSCWAFSTVATVEGINKIRTGKLISLSEQELLDCDRR-SHGCKGGYQTGSIQYVADNGGVHTEKEYPYEKKQGKCRAKEKKGTKVQITGYKRVPANDEISLIQGIGNQPVSVLHESK 138          
BLAST of FC877880 vs. ExPASy Swiss-Prot
Match: CYSP3_HOMAM (Digestive cysteine proteinase 3 OS=Homarus americanus GN=LCP3 PE=2 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 9.039e-38
Identity = 91/225 (40.44%), Postives = 131/225 (58.22%), Query Frame = 2
Query:  215 KHGKAYNALGEKEKRFEIFKENLRFIDEHNSENR----TYKVGLNRFADLTNEEYRSMHLGARFGAKRTSLKSKRSNRYLPRVGEALPDSVDWRKKGAVAEVKDQGSCGSCWAFSTIAAVEGINKIVTGSLISLSEQELVDCDTSY-NEGCNGGLMDYAFEFIIDNGGIDTEEDYPYKAIDGSCDTYRKNAKVVTIDDYEDVPLNDEKALQKAVAN-QPVSVAIE 871
            ++G+ Y    E+  R  +F++N + I++ N +      T+KV +N+F D+TNEE+ ++  G + G++      +    +    G    D VDWR K  V  VKDQ  CGSCWAFS   A+EG + +    L+SLSEQ+LVDC T Y N+GC GG M  AF++I DNGGIDTE  YPY+A D SC     +   +     E    + E+ALQ+AV+   P+SVAI+
Sbjct:   26 QYGRKYGDAKEELYRQRVFQQNEQLIEDFNKKFENGEVTFKVAMNQFGDMTNEEFNAVMKGYKKGSR-----GEPKAVFTAEAGPMAAD-VDWRTKALVTPVKDQEQCGSCWAFSATGALEGQHFLKNDELVSLSEQQLVDCSTDYGNDGCGGGWMTSAFDYIKDNGGIDTESSYPYEAEDRSCRFDANSIGAICTGSVE--VQHTEEALQEAVSGVGPISVAID 242          
BLAST of FC877880 vs. ExPASy Swiss-Prot
Match: CYSP1_MAIZE (Cysteine proteinase 1 OS=Zea mays GN=CCP1 PE=2 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 1.181e-37
Identity = 84/233 (36.05%), Postives = 131/233 (56.22%), Query Frame = 2
Query:  197 FEAWLVKHGKAYNALGEKEKRFEIFKENLRFIDEHNSENRTYKVGLNRFADLTNEEYRSMHLGARFGAKRTSLKSKRSNRYLPRVG-EALPDSVDWRKKGAVAEVKDQGSCGSCWAFSTIAAVEGINKIVTGSLISLSEQELVDCD--------TSYNEGCNGGLMDYAFEFIIDNGGIDTEEDYPYKAIDGSCDTYRKNAKVVTIDDYEDVPLNDEKALQKAVANQPVSVAI 868
            F +++ + GK+Y    E   R  +FK+NLR    H   + + + G+ +F+DLT  E+R  +LG R   +    +   S    P +  + LPD  DWR  GAV  VK+QGSCGSCW+FS   A+EG + + TG L  LSEQ+ VDCD         S + GCNGGLM  AF ++   GG+++E+DYPY   DG C  + K+  V ++ ++  V +++ +     + + P+++ I
Sbjct:   48 FLSFVQRFGKSYKDADEHAYRLSVFKDNLRRARRHQLLDPSAEHGVTKFSDLTPAEFRRTYLGLRKSRRALLRELGESAHEAPVLPTDGLPDDFDWRDHGAVGPVKNQGSCGSCWSFSASGALEGAHYLATGKLEVLSEQQFVDCDHECDSSEPDSCDSGCNGGLMTTAFSYLQKAGGLESEKDYPYTGSDGKC-KFDKSKIVASVQNFSVVSVDEAQISANLIKHGPLAIGI 279          
BLAST of FC877880 vs. ExPASy Swiss-Prot
Match: MEX1_JACME (Mexicain OS=Jacaratia mexicana PE=1 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 4.486e-37
Identity = 74/138 (53.62%), Postives = 98/138 (71.01%), Query Frame = 2
Query:  464 PDSVDWRKKGAVAEVKDQGSCGSCWAFSTIAAVEGINKIVTGSLISLSEQELVDCDTSYNEGCNGGLMDYAFEFIIDNGGIDTEEDYPYKAIDGSCDTYRKNAKVVTIDDYEDVPLNDEKALQKAVANQPVSVAIERR 877
            P+S+DWR+KGAV  VK+Q  CGSCWAFST+A +EGINKI+TG LISLSEQEL+DC+   + GC+GG    + ++++DN G+ TE +YPY+   G C    K    V I  Y+ VP NDE +L +A+ANQPVSV  + R
Sbjct:    2 PESIDWREKGAVTPVKNQNPCGSCWAFSTVATIEGINKIITGQLISLSEQELLDCEYR-SHGCDGGYQTPSLQYVVDN-GVHTEREYPYEKKQGRCRAKDKKGPKVYITGYKYVPANDEISLIQAIANQPVSVVTDSR 137          
BLAST of FC877880 vs. ExPASy Swiss-Prot
Match: CATL6_HUMAN (Putative cathepsin L-like protein 6 OS=Homo sapiens GN=CTSLL6 PE=5 SV=3)

HSP 1 Score: 154.451 bits (389), Expect = 7.652e-37
Identity = 88/200 (44.00%), Postives = 120/200 (60.00%), Query Frame = 2
Query:  290 IDEHNSE----NRTYKVGLNRFADLTNEEYRSMHLGARFGAKRTSLKSKRSNRYLPRVGEALPDSVDWRKKGAVAEVKDQGSCGSCWAFSTIAAVEGINKIVTGSLISLSEQELVDCD-TSYNEGCNGGLMDYAFEFIIDNGGIDTEEDYPYKAIDGSCDTYRKNAKVVTIDD--YEDVPLNDEKALQKAVAN-QPVSVA 865
            I++HN E      ++ + +N F D+TNEE+R +  G ++       K ++  ++  R+   +P SVDWR+KG +  VKDQG CGSCWAFS   A+EG     TG LISL+EQ LVDC     NEGCNGG MD  F ++ +NGG+D+E  YPY   +G   T R N K    +D  + D+P + EK L KAVA   P+SVA
Sbjct:    2 IEQHNQEYSQGKHSFTMAMNAFGDMTNEEFRQVMNGFQYQ------KHRKGKQFQERLLPEIPTSVDWREKGYMTPVKDQGQCGSCWAFSATGALEGQMFWKTGKLISLNEQNLVDCSGPQGNEGCNGGFMDNPFRYVQENGGLDSEASYPY---EGKVKTCRYNPKYSAANDTGFVDIP-SQEKDLAKAVATVGPISVA 191          
BLAST of FC877880 vs. ExPASy Swiss-Prot
Match: CATV_GVXN (Viral cathepsin OS=Xestia c-nigrum granulosis virus GN=VCATH PE=3 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 9.994e-37
Identity = 101/276 (36.59%), Postives = 149/276 (53.99%), Query Frame = 2
Query:   77 MFLLFLFTVS----SALDMSIVSYDKTHESKSSSWRTDDEVMAMFEAWLVKHGKAYNALGEKEKRFEIFKENLRFIDEHNSENRTYKVGLNRFADLTNEEYRSMHLGARFGAKRTSLKSKRSNRYL-PRV--GEA---LPDSVDWRKKGAVAEVKDQGSCGSCWAFSTIAAVEGINKIVTGSLISLSEQELVDCDTSYNEGCNGGLMDYAFEFIIDNGGIDTEEDYPYKAIDGSCDTYRKNAKVVTIDDYEDVPLNDEKALQKAVANQ-PVSVAIE 871
            MFL ++F V+    +   +S ++YD ++  +            +F  ++VK+ K Y    EKE RFEIFK+NL  I+  N+   +    +N  AD+++ E     L    G K + ++ ++ N +  P V  G++   +PDS DWR + +V  VK Q  CGSCWAFS +A +E +  I     + LSEQ+LVDCD   N GCNGGLM +AFE II  GGI  E  YPY  +DG C   +   + V +       L  EK L++ +  + PVSVAI+
Sbjct:   11 MFLPWVFCVALLTLNVCAVSYIAYDMSNAQE------------LFNEFVVKYNKVYKDDQEKEARFEIFKQNLADINARNALEDSAMFEINSRADISSNEL----LQKLTGLKLSLMRGEKKNSFCTPTVISGDSSGKVPDSFDWRDRNSVTSVKMQKECGSCWAFSAVANIESLYHIKHNVSLDLSEQQLVDCD-KVNNGCNGGLMSWAFEGIIRAGGISYEAPYPYTGVDGVC---KNTTRYVQLSGCYAYDLRSEKKLRQVLHEKGPVSVAID 266          
The following BLAST results are available for this feature:
BLAST of FC877880 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 158
Match NameE-valueIdentityDescription
CATLL_PHACE2.810e-3940.34Cathepsin L-like proteinase OS=Phaedon cochleariae... [more]
CATH_RAT2.810e-3940.79Cathepsin H OS=Rattus norvegicus GN=Ctsh PE=1 SV=1[more]
CATH_MOUSE8.176e-3940.79Cathepsin H OS=Mus musculus GN=Ctsh PE=2 SV=1[more]
CFAD_DICDI1.821e-3835.04Counting factor associated protein D OS=Dictyostel... [more]
MEX2_JACME9.039e-3854.35Chymomexicain OS=Jacaratia mexicana PE=1 SV=1[more]
CYSP3_HOMAM9.039e-3840.44Digestive cysteine proteinase 3 OS=Homarus america... [more]
CYSP1_MAIZE1.181e-3736.05Cysteine proteinase 1 OS=Zea mays GN=CCP1 PE=2 SV=... [more]
MEX1_JACME4.486e-3753.62Mexicain OS=Jacaratia mexicana PE=1 SV=1[more]
CATL6_HUMAN7.652e-3744.00Putative cathepsin L-like protein 6 OS=Homo sapien... [more]
CATV_GVXN9.994e-3736.59Viral cathepsin OS=Xestia c-nigrum granulosis viru... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA27DH08RM1 IVIA1 Citrus clementina cDNA clone IC0AAA27DH08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877880 ID=FC877880; Name=FC877880; organism=Citrus clementina; type=EST; length=881bp
ATCTTCTTCTCCCAAAAAGAAAAAAAAAAAGTTCTTTTCTCAAAAGATGG
GTTTGTTTAGATCACCAACCATGGCCATGTTTTTACTTTTTCTCTTCACT
GTTTCATCTGCCTTGGACATGTCGATTGTATCTTATGATAAAACCCATGA
GTCAAAATCTAGCAGCTGGAGGACCGACGATGAGGTTATGGCTATGTTCG
AGGCCTGGCTCGTGAAGCATGGCAAGGCTTATAACGCTTTGGGTGAAAAA
GAGAAGAGGTTTGAGATCTTTAAGGAAAATCTTAGGTTTATTGATGAACA
TAACTCAGAGAACCGGACCTACAAGGTTGGGTTGAACCGGTTTGCTGATT
TGACCAACGAGGAGTACCGGTCCATGCATCTGGGTGCACGCTTTGGTGCT
AAAAGGACTTCCTTGAAATCAAAGAGGAGCAACCGTTATCTGCCACGTGT
CGGCGAGGCGTTGCCGGACTCTGTTGATTGGAGGAAGAAAGGAGCTGTCG
CTGAAGTTAAAGATCAAGGAAGCTGTGGGAGTTGCTGGGCATTTTCAACC
ATTGCAGCTGTAGAGGGTATAAACAAGATTGTTACAGGTAGCCTGATCTC
ACTATCCGAGCAGGAGTTGGTGGATTGTGATACATCATATAATGAAGGAT
GTAATGGTGGTTTGATGGACTATGCATTCGAGTTCATTATTGATAATGGA
GGTATTGACACAGAAGAAGATTACCCCTACAAAGCCATTGATGGTAGCTG
TGACACATATCGGAAAAATGCCAAAGTAGTTACAATTGATGACTATGAAG
ATGTTCCCCTAAATGACGAGAAAGCTTTGCAAAAGGCAGTTGCAAATCAA
CCCGTGAGTGTTGCCATTGAAAGGAGGTGGC
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