FC877881

Overview
NameFC877881
Unique NameFC877881
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length880
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig6308 contig Ccv1_Contig6308:148..1027. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC877881 vs. ExPASy Swiss-Prot
Match: NIPA1_HUMAN (Magnesium transporter NIPA1 OS=Homo sapiens GN=NIPA1 PE=1 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 2.722e-34
Identity = 76/189 (40.21%), Postives = 111/189 (58.73%), Query Frame = 2
Query:  314 IGFILAVVSSAFIGSSFIIXXXXXXXXXXXXXXXXXXXXXXXLEPLWWVGMFTMIVGEIANFVAYIYAPAVLVTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMIVLHAPLEESLNSVQEIWVLATQPAFLLYVGSVVAVALVLILYCAPRYGQTNILIYIGICSVIGSLTVMSVKAIGI 880
            +G  +AVVSS   GS+F++                        + +WW G   M VG+I NF+AY   P VLVTPLGAL +   ++LA ++L EKL  +G LGCLL   GS ++++H+P  ES+ +  E+    T P F+ Y+  V+ + L+LI + AP +G TNI++YI ICS++GS TV S K IG+
Sbjct:   30 LGLGVAVVSSLVNGSTFVLQKKGIVRAKRRGTSYLT-------DIVWWAGTIAMAVGQIGNFLAYTAVPTVLVTPLGALGVPFGSILASYLLKEKLNILGKLGCLLSCAGSVVLIIHSPKSESVTTQAELEEKLTNPVFVGYLCIVLLMLLLLIFWIAPAHGPTNIMVYISICSLLGSFTVPSTKGIGL 211          
BLAST of FC877881 vs. ExPASy Swiss-Prot
Match: NPAL2_HUMAN (NIPA-like protein 2 OS=Homo sapiens GN=NIPAL2 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 5.157e-17
Identity = 49/142 (34.51%), Postives = 79/142 (55.63%), Query Frame = 2
Query:  449 LWWVGMFTMIVGEIANFVAYIYAPAVLVTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMIVLHAPLEESLNSVQEIWVLATQPAFLLYVGSVVAVALVLILYCAPRYGQTNILIYIGICSVIGSLTVMSVKAI 874
            LWW G+  M VGE  NF AY +AP  L+ PLG +S+  SA+++   L + L+   +LG  L   G+ ++V  AP      S + +        FL+YV   + +  +L LY   R G  +++I + + +++ SLTV+SVKA+
Sbjct:   89 LWWGGVLLMAVGETGNFAAYGFAPITLIAPLGCVSVTGSAIISVTFLKDNLRASDLLGTTLAFAGTYLLVNFAPNITQAISARTVQYYLVGWQFLIYVILEILIFCIL-LYFYKRKGMKHMVILLTLVAILASLTVISVKAV 229          
BLAST of FC877881 vs. ExPASy Swiss-Prot
Match: NPAL3_PONAB (NIPA-like protein 3 OS=Pongo abelii GN=NIPAL3 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 6.735e-17
Identity = 47/149 (31.54%), Postives = 83/149 (55.70%), Query Frame = 2
Query:  452 WWVGMFTMIVGEIANFVAYIYAPAVLVTPLGALSIIVSAVLAHFMLNEKLQK--------MGMLGCLLCVVGSTMIVLHAPLEESLNSVQEIWVLATQPAFLLYVGSVVAVALVLILYCAPRYGQTNILIYIGICSVIGSLTVMSVKAI 874
            WW+G+F M++GE+  F +Y +AP  L+ PL A+S+I SA++    + EK +         +  +GC L VVG+ ++V  AP      + + +        FLLY+  V  +   L+LY        NI++ + + +++GS+TV++VKA+
Sbjct:   76 WWLGLFLMLLGELGVFASYAFAPLSLIVPLSAVSVIASAIIGIIFIKEKWKPKDFLRRYILSFVGCGLAVVGTYLLVTFAPNSREKMTGENVTRHLVSWPFLLYM-LVEIILFCLLLYFYKEKNANNIVVILLLVALLGSMTVVTVKAV 223          
BLAST of FC877881 vs. ExPASy Swiss-Prot
Match: NPAL3_HUMAN (NIPA-like protein 3 OS=Homo sapiens GN=NIPAL3 PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 6.735e-17
Identity = 47/149 (31.54%), Postives = 83/149 (55.70%), Query Frame = 2
Query:  452 WWVGMFTMIVGEIANFVAYIYAPAVLVTPLGALSIIVSAVLAHFMLNEKLQK--------MGMLGCLLCVVGSTMIVLHAPLEESLNSVQEIWVLATQPAFLLYVGSVVAVALVLILYCAPRYGQTNILIYIGICSVIGSLTVMSVKAI 874
            WW+G+F M++GE+  F +Y +AP  L+ PL A+S+I SA++    + EK +         +  +GC L VVG+ ++V  AP      + + +        FLLY+  V  +   L+LY        NI++ + + +++GS+TV++VKA+
Sbjct:   76 WWLGLFLMLLGELGVFASYAFAPLSLIVPLSAVSVIASAIIGIIFIKEKWKPKDFLRRYVLSFVGCGLAVVGTYLLVTFAPNSHEKMTGENVTRHLVSWPFLLYM-LVEIILFCLLLYFYKEKNANNIVVILLLVALLGSMTVVTVKAV 223          
BLAST of FC877881 vs. ExPASy Swiss-Prot
Match: NPAL3_MOUSE (NIPA-like protein 3 OS=Mus musculus GN=Nipal3 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.659e-15
Identity = 45/149 (30.20%), Postives = 82/149 (55.03%), Query Frame = 2
Query:  452 WWVGMFTMIVGEIANFVAYIYAPAVLVTPLGALSIIVSAVLAHFMLNEKLQK--------MGMLGCLLCVVGSTMIVLHAPLEESLNSVQEIWVLATQPAFLLYVGSVVAVALVLILYCAPRYGQTNILIYIGICSVIGSLTVMSVKAI 874
            WW+G+  +++GE+  F +Y +AP  L+ PL A+S+I SA++    + EK +         +  +GC L +VG+ ++V  AP      + + I        FLLY+  V  V   L+LY        +I++ + + +++GS+TV++VKA+
Sbjct:   80 WWLGLLLLLLGELGVFASYAFAPLSLIVPLSAVSVIASAIIGIIFIKEKWKPKDFVRRYVLSFVGCGLAIVGTYLLVTFAPNSHEKMTGENIARHLVSWPFLLYM-LVAIVLFCLLLYFYKERNANSIVVILLLVALLGSMTVVTVKAV 227          
BLAST of FC877881 vs. ExPASy Swiss-Prot
Match: NPAL2_MOUSE (NIPA-like protein 2 OS=Mus musculus GN=Nipal2 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.075e-14
Identity = 48/142 (33.80%), Postives = 76/142 (53.52%), Query Frame = 2
Query:  449 LWWVGMFTMIVGEIANFVAYIYAPAVLVTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMIVLHAPLEESLNSVQEIWVLATQPAFLLYVGSVVAVALVLILYCAPRYGQTNILIYIGICSVIGSLTVMSVKAI 874
            LW  G+    +GE  NF AY  AP  L+ PLG +S+  SA+++   L E L+   +LG  L   G+ ++V  AP      S + +        FL+YV   + V  +L LY   R G  +I++ + + +++ SLTV+SVKA+
Sbjct:   89 LWLSGVLLTALGETGNFAAYGVAPITLIAPLGCMSVTGSAIISVLFLKENLRASDLLGMTLAFAGTYLLVNFAPNITQAISARTVQYYFVGWQFLVYVILEILVFCIL-LYFHKRKGMKHIVVLLTLVALLASLTVISVKAV 229          
The following BLAST results are available for this feature:
BLAST of FC877881 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
NIPA1_HUMAN2.722e-3440.21Magnesium transporter NIPA1 OS=Homo sapiens GN=NIP... [more]
NPAL2_HUMAN5.157e-1734.51NIPA-like protein 2 OS=Homo sapiens GN=NIPAL2 PE=2... [more]
NPAL3_PONAB6.735e-1731.54NIPA-like protein 3 OS=Pongo abelii GN=NIPAL3 PE=2... [more]
NPAL3_HUMAN6.735e-1731.54NIPA-like protein 3 OS=Homo sapiens GN=NIPAL3 PE=1... [more]
NPAL3_MOUSE1.659e-1530.20NIPA-like protein 3 OS=Mus musculus GN=Nipal3 PE=2... [more]
NPAL2_MOUSE1.075e-1433.80NIPA-like protein 2 OS=Mus musculus GN=Nipal2 PE=2... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA60DA06RM1 IVIA1 Citrus clementina cDNA clone IC0AAA60DA06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877881 ID=FC877881; Name=FC877881; organism=Citrus clementina; type=EST; length=880bp
AAGGAGACAGACAAATTAGTAAAAAAATATGAACCAAAATCAAACCAAAT
CACTCTGACTGTGTAGTGTGTATCCTTTGAACGGAGCGGTCAACGTTCCT
CAAAATCACAGCAGAAGCTGCTGCTATTGCGTCTTGGAATCAATTTGTCG
ATAATCAATCATCAAAATCAATTATTGGAGTTATTAGTTAATAGCATCGG
GTCGGTTGGTCAATCACTCGCTGACGTGATGTGATGAGTGCCGTTCGATT
TCAATTACGTCGTCTGCTGCGGTCGTAACAAGAAGAAATAGATAGATGTT
CTCGAGTAATTTGATAGGCTTCATTTTGGCTGTGGTCTCAAGTGCCTTCA
TTGGCTCCAGCTTTATCATCAAGAAGAAGGGCCTCCGCAAGGCCGGCGCC
AACGGCGCTCGTGCTGGTTCTGGGGGTTATGGTTATTTGTTAGAGCCGCT
ATGGTGGGTTGGAATGTTTACGATGATAGTTGGAGAGATTGCCAATTTTG
TAGCATACATTTACGCCCCTGCAGTCCTGGTGACTCCACTTGGTGCATTG
AGTATCATCGTTAGTGCTGTTTTGGCACATTTCATGTTGAATGAGAAATT
ACAGAAAATGGGAATGTTGGGTTGTCTTTTATGCGTAGTGGGCTCTACAA
TGATTGTGCTTCATGCTCCTCTAGAGGAGTCTCTTAATTCGGTTCAAGAA
ATCTGGGTGTTAGCGACGCAACCCGCATTTCTTTTGTATGTGGGCTCAGT
GGTAGCCGTGGCACTAGTGTTGATATTGTATTGTGCTCCTCGATATGGCC
AAACCAACATATTGATCTATATAGGAATTTGCTCTGTGATTGGCTCATTG
ACAGTTATGAGTGTAAAAGCCATTGGCATT
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