FC877882

Overview
NameFC877882
Unique NameFC877882
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length925
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC877882 vs. ExPASy Swiss-Prot
Match: UBIA_PSEE4 (4-hydroxybenzoate octaprenyltransferase OS=Pseudomonas entomophila (strain L48) GN=ubiA PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.502e-30
Identity = 70/203 (34.48%), Postives = 108/203 (53.20%), Query Frame = 1
Query:  283 YAKLARLDKPIGTWLLAWPCMWSITMAAPPGHFPDFKMMXXXXXXXXXXXXXXCTVNDLLDRDIDNMVERTRLRPIASGLLTPXXXXXXXXXXXXXXXXXXXXXNNFSRILGASSLLLVFSYPLMKRFTFWPQAYLGLTFNWGALLGWAAVKGSLDLAVVFPMYISGVFWTLVYDTIYAHQDKEDDLKVGVKSTALRFGDSSK 891
            + +L+R+D+PIG +LL WP + ++ +A      P  K +              C +ND  DR +D  V+RT  RP+ASG + P                     N  +  L   ++ L F YP MKR+T++PQ  LG  ++WG  + + A  G L  A  + +YI+ + WT+ YDT YA  D++DDLK+GVKSTA+ FG++ +
Sbjct:   19 FVQLSRMDRPIGIYLLLWPTLVAVWIAGNGS--PSLKNVLIFALGVVLMRAAGCCINDFADRKVDGHVKRTADRPLASGRVKPREAVMLFALLVGVSFLLVLCTNATTVWLSFGAVALAFCYPFMKRYTYYPQVVLGAAYSWGIPMAFTAAGGELP-ASAWLLYIANLLWTVGYDTYYAMVDRDDDLKIGVKSTAILFGEADR 218          
BLAST of FC877882 vs. ExPASy Swiss-Prot
Match: UBIA_ENT38 (4-hydroxybenzoate octaprenyltransferase OS=Enterobacter sp. (strain 638) GN=ubiA PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.502e-30
Identity = 72/204 (35.29%), Postives = 105/204 (51.47%), Query Frame = 1
Query:  280 AYAKLARLDKPIGTWLLAWPCMWSITMAAPPGHFPDFKMMXXXXXXXXXXXXXXCTVNDLLDRDIDNMVERTRLRPIASGLLTPXXXXXXXXXXXXXXXXXXXXXNNFSRILGASSLLLVFSYPLMKRFTFWPQAYLGLTFNWGALLGWAAVKGSLDLAVVFPMYISGVFWTLVYDTIYAHQDKEDDLKVGVKSTALRFGDSSK 891
            A+ +L R DKPIG  LL WP +W++ +AAP    P   ++              C VND  DR  D  V+RT  RP+ SG ++                      N  + +L  ++L L + YP MKR+T  PQ  LG  F W   + +AAV  S+ L+  + M+++ + W + YDT YA  D++DDLK+G+KSTA+ FG   K
Sbjct:   12 AFHRLMRTDKPIGALLLLWPTLWALWVAAPG--LPPLWILAVFVAGVWLMRAAGCVVNDYADRKFDGHVKRTANRPLPSGQVSEKEARTLFVVLVVLAFLLVLTLNTMTILLSVAALALAWVYPFMKRYTHLPQVVLGAAFGWSIPMAFAAVSESVPLSC-WLMFLANILWAVAYDTQYAMVDRDDDLKIGIKSTAILFGRHDK 212          
BLAST of FC877882 vs. ExPASy Swiss-Prot
Match: UBIA_CITK8 (4-hydroxybenzoate octaprenyltransferase OS=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) GN=ubiA PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.502e-30
Identity = 72/204 (35.29%), Postives = 104/204 (50.98%), Query Frame = 1
Query:  280 AYAKLARLDKPIGTWLLAWPCMWSITMAAPPGHFPDFKMMXXXXXXXXXXXXXXCTVNDLLDRDIDNMVERTRLRPIASGLLTPXXXXXXXXXXXXXXXXXXXXXNNFSRILGASSLLLVFSYPLMKRFTFWPQAYLGLTFNWGALLGWAAVKGSLDLAVVFPMYISGVFWTLVYDTIYAHQDKEDDLKVGVKSTALRFGDSSK 891
            A+ +L R DKPIG  LL WP +W++ +A P    P   ++              C VND  DR  D  V+RT  RP+ SG +T                      N  + +L  ++L L + YP MKR+T  PQ  LG  F W   + +AAV  S+ L+  + M+++ + W + YDT YA  D++DDLK+G+KSTA+ FG   K
Sbjct:   12 AFHRLMRTDKPIGALLLLWPTLWALWVATPG--VPQLWILAVFVAGVWLMRAAGCVVNDYADRKFDGHVKRTANRPLPSGAVTEKEARTLFVVLVALSFLLVLTLNTMTILLSIAALALAWVYPFMKRYTHLPQVVLGAAFGWSIPMAFAAVSESVPLSC-WLMFLANILWAVAYDTQYAMVDRDDDLKIGIKSTAILFGRHDK 212          
BLAST of FC877882 vs. ExPASy Swiss-Prot
Match: UBIA_PSEPG (4-hydroxybenzoate octaprenyltransferase OS=Pseudomonas putida (strain GB-1) GN=ubiA PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.962e-30
Identity = 70/203 (34.48%), Postives = 108/203 (53.20%), Query Frame = 1
Query:  283 YAKLARLDKPIGTWLLAWPCMWSITMAAPPGHFPDFKMMXXXXXXXXXXXXXXCTVNDLLDRDIDNMVERTRLRPIASGLLTPXXXXXXXXXXXXXXXXXXXXXNNFSRILGASSLLLVFSYPLMKRFTFWPQAYLGLTFNWGALLGWAAVKGSLDLAVVFPMYISGVFWTLVYDTIYAHQDKEDDLKVGVKSTALRFGDSSK 891
            + +L+R+D+PIG +LL WP + ++ +A      P    +              C +ND  DR +D  V+RT  RP+ASG + P                     N+ +  L   ++ L F YP MKR+T++PQ  LG  ++WG  + + A  G L  A  + +YI+ + WT+ YDT YA  D++DDLK+GVKSTA+ FGD+ +
Sbjct:   19 FVQLSRMDRPIGIYLLLWPTLSAVWIAGNGS--PTLANVLIFGLGVVLMRAAGCCINDFADRKVDGHVKRTADRPLASGRVRPREALALFAMLVGVSFLLVLCTNSRTVWLSFGAVALAFCYPFMKRYTYYPQVVLGAAYSWGIPMAFTAAGGELP-ASAWLLYIANLLWTVGYDTYYAMVDRDDDLKIGVKSTAILFGDADR 218          
BLAST of FC877882 vs. ExPASy Swiss-Prot
Match: UBIA_KLEP7 (4-hydroxybenzoate octaprenyltransferase OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) GN=ubiA PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.962e-30
Identity = 70/204 (34.31%), Postives = 107/204 (52.45%), Query Frame = 1
Query:  280 AYAKLARLDKPIGTWLLAWPCMWSITMAAPPGHFPDFKMMXXXXXXXXXXXXXXCTVNDLLDRDIDNMVERTRLRPIASGLLTPXXXXXXXXXXXXXXXXXXXXXNNFSRILGASSLLLVFSYPLMKRFTFWPQAYLGLTFNWGALLGWAAVKGSLDLAVVFPMYISGVFWTLVYDTIYAHQDKEDDLKVGVKSTALRFGDSSK 891
            A+ +L R DKPIG  LL WP +W++ +A+P    P   ++              C VND  DR  D  V+RT  RP+ SG +T                      N  + +L  ++L L + YP MKR+T  PQ  LG  F W   + ++AV  SL L+  + M+++ + W + YDT YA  D++DD+K+G+KSTA+ FG++ +
Sbjct:   12 AFHRLMRTDKPIGALLLLWPTLWALWVASPG--VPPLWILAVFVAGVWLMRAAGCVVNDYADRKFDGHVKRTARRPLPSGDVTEKEARTLFIVLVLLSFLLVLTLNTMTILLSVAALALAWVYPFMKRYTHLPQVVLGAAFGWSIPMAFSAVSESLPLSC-WLMFLANILWAVAYDTQYAMVDRDDDVKIGIKSTAILFGENDR 212          
BLAST of FC877882 vs. ExPASy Swiss-Prot
Match: UBIA_KLEP3 (4-hydroxybenzoate octaprenyltransferase OS=Klebsiella pneumoniae (strain 342) GN=ubiA PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.962e-30
Identity = 70/204 (34.31%), Postives = 107/204 (52.45%), Query Frame = 1
Query:  280 AYAKLARLDKPIGTWLLAWPCMWSITMAAPPGHFPDFKMMXXXXXXXXXXXXXXCTVNDLLDRDIDNMVERTRLRPIASGLLTPXXXXXXXXXXXXXXXXXXXXXNNFSRILGASSLLLVFSYPLMKRFTFWPQAYLGLTFNWGALLGWAAVKGSLDLAVVFPMYISGVFWTLVYDTIYAHQDKEDDLKVGVKSTALRFGDSSK 891
            A+ +L R DKPIG  LL WP +W++ +A+P    P   ++              C VND  DR  D  V+RT  RP+ SG +T                      N  + +L  ++L L + YP MKR+T  PQ  LG  F W   + ++AV  SL L+  + M+++ + W + YDT YA  D++DD+K+G+KSTA+ FG++ +
Sbjct:   12 AFHRLMRTDKPIGALLLLWPTLWALWVASPG--VPPLWILAVFVAGVWLMRAAGCVVNDYADRKFDGHVKRTARRPLPSGDVTEKEARTLFIVLVLLSFLLVLTLNTMTILLSVAALALAWVYPFMKRYTHLPQVVLGAAFGWSIPMAFSAVSESLPLSC-WLMFLANILWAVAYDTQYAMVDRDDDVKIGIKSTAILFGENDR 212          
BLAST of FC877882 vs. ExPASy Swiss-Prot
Match: UBIA_XYLFM (4-hydroxybenzoate octaprenyltransferase OS=Xylella fastidiosa (strain M12) GN=ubiA PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 2.562e-30
Identity = 69/200 (34.50%), Postives = 104/200 (52.00%), Query Frame = 1
Query:  283 YAKLARLDKPIGTWLLAWPCMWSITMAAPPGHFPDFKMMXXXXXXXXXXXXXXCTVNDLLDRDIDNMVERTRLRPIASGLLTPXXXXXXXXXXXXXXXXXXXXXNNFSRILGASSLLLVFSYPLMKRFTFWPQAYLGLTFNWGALLGWAAVKGSLDLAVVFPMYISGVFWTLVYDTIYAHQDKEDDLKVGVKSTALRFGD 882
            Y KLAR D+P+G  LL WP  W++ +AA     P +  +              C +ND  DR +D  VERT  RP+ +G ++P                     N  + +L  + L L  +YP +KR+T  PQ YLGL F WG  + +AA++G +   + + +YI+ + WT  YDT YA  D++DD+K+G KS A+ F +
Sbjct:   23 YWKLARGDRPVGFLLLLWPTWWALWLAADG--VPPWWTLCVFTTGIWLTRSAGCVINDYTDRWLDPHVERTCTRPLVTGTVSPRNALLMFATLMLIAFGLVLTMNQLTVLLSVAGLFLAMTYPYLKRYTHLPQVYLGLAFGWGIPMAFAAIQGKVP-TLAWLLYIANILWTTAYDTWYAMVDRDDDIKMGAKSIAILFAE 219          
BLAST of FC877882 vs. ExPASy Swiss-Prot
Match: UBIA_THIDA (4-hydroxybenzoate octaprenyltransferase OS=Thiobacillus denitrificans (strain ATCC 25259) GN=ubiA PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 2.562e-30
Identity = 78/206 (37.86%), Postives = 106/206 (51.46%), Query Frame = 1
Query:  262 LPRQARAYAKLARLDKPIGTWLLAWPCMWSITMAAPPGHFPDFKMMXXXXXXXXXXXXXXCTVNDLLDRDIDNMVERTRLRPIASGLLTPXXXXXXXXXXXXXXXXXXXXXNNFSRILGASSLLLVFSYPLMKRFTFWPQAYLGLTFNWGALLGWAAVKGSLDLAVVFPMYISGVFWTLVYDTIYAHQDKEDDLKVGVKSTALRFG 879
            L  +   Y KLARLDKPIG  LL WP +W+  +A+     PD+ ++              C VND  DRD D  V RTR RPIA+G ++P                     N     L   +L L  SYP  KRF   PQAYLG+ F +G  + +AA+ G +  A  + +  + VFW + YDT YA  D+ DDLK+G+K++A+ FG
Sbjct:    3 LTERLSLYEKLARLDKPIGILLLLWPTLWAQWLASNGD--PDWLILWIFVMGVVLMRSAGCVVNDYADRDFDPHVARTRDRPIAAGKVSPKEALLLAAGLSLLAFLLILPLNALVLKLSLIALFLAGSYPFTKRFFAIPQAYLGVAFGFGIPMSYAALWGEVP-AEAWLLLAANVFWAIAYDTEYAMVDRADDLKIGIKTSAITFG 205          
BLAST of FC877882 vs. ExPASy Swiss-Prot
Match: UBIA_SHISS (4-hydroxybenzoate octaprenyltransferase OS=Shigella sonnei (strain Ss046) GN=ubiA PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 2.562e-30
Identity = 71/204 (34.80%), Postives = 104/204 (50.98%), Query Frame = 1
Query:  280 AYAKLARLDKPIGTWLLAWPCMWSITMAAPPGHFPDFKMMXXXXXXXXXXXXXXCTVNDLLDRDIDNMVERTRLRPIASGLLTPXXXXXXXXXXXXXXXXXXXXXNNFSRILGASSLLLVFSYPLMKRFTFWPQAYLGLTFNWGALLGWAAVKGSLDLAVVFPMYISGVFWTLVYDTIYAHQDKEDDLKVGVKSTALRFGDSSK 891
            A+ +L R DKPIG  LL WP +W++ +A P    P   ++              C VND  DR  D  V+RT  RP+ SG +T                      N  + +L  ++L L + YP MKR+T  PQ  LG  F W   + +AAV  S+ L+  + M+++ + W + YDT YA  D++DD+K+G+KSTA+ FG   K
Sbjct:   12 AFHRLMRTDKPIGALLLLWPTLWALWVATPG--VPQLWILAVFVAGVWLMRAAGCVVNDYADRKFDGHVKRTANRPLPSGAVTEKEARALFVVLVLISFLLVLTLNTMTILLSIAALALAWVYPFMKRYTHLPQVVLGAAFGWSIPMAFAAVSESVPLSC-WLMFLANILWAVAYDTQYAMVDRDDDVKIGIKSTAILFGQYDK 212          
BLAST of FC877882 vs. ExPASy Swiss-Prot
Match: UBIA_SHIF8 (4-hydroxybenzoate octaprenyltransferase OS=Shigella flexneri serotype 5b (strain 8401) GN=ubiA PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 2.562e-30
Identity = 71/204 (34.80%), Postives = 104/204 (50.98%), Query Frame = 1
Query:  280 AYAKLARLDKPIGTWLLAWPCMWSITMAAPPGHFPDFKMMXXXXXXXXXXXXXXCTVNDLLDRDIDNMVERTRLRPIASGLLTPXXXXXXXXXXXXXXXXXXXXXNNFSRILGASSLLLVFSYPLMKRFTFWPQAYLGLTFNWGALLGWAAVKGSLDLAVVFPMYISGVFWTLVYDTIYAHQDKEDDLKVGVKSTALRFGDSSK 891
            A+ +L R DKPIG  LL WP +W++ +A P    P   ++              C VND  DR  D  V+RT  RP+ SG +T                      N  + +L  ++L L + YP MKR+T  PQ  LG  F W   + +AAV  S+ L+  + M+++ + W + YDT YA  D++DD+K+G+KSTA+ FG   K
Sbjct:   12 AFHRLMRTDKPIGALLLLWPTLWALWVATPG--VPQLWILAVFVAGVWLMRAAGCVVNDYADRKFDGHVKRTANRPLPSGAVTEKEARALFVVLVLISFLLVLTLNTMTILLSIAALALAWVYPFMKRYTHLPQVVLGAAFGWSIPMAFAAVSESVPLSC-WLMFLANILWAVAYDTQYAMVDRDDDVKIGIKSTAILFGQYDK 212          
The following BLAST results are available for this feature:
BLAST of FC877882 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 235
Match NameE-valueIdentityDescription
UBIA_PSEE41.502e-3034.484-hydroxybenzoate octaprenyltransferase OS=Pseudom... [more]
UBIA_ENT381.502e-3035.294-hydroxybenzoate octaprenyltransferase OS=Enterob... [more]
UBIA_CITK81.502e-3035.294-hydroxybenzoate octaprenyltransferase OS=Citroba... [more]
UBIA_PSEPG1.962e-3034.484-hydroxybenzoate octaprenyltransferase OS=Pseudom... [more]
UBIA_KLEP71.962e-3034.314-hydroxybenzoate octaprenyltransferase OS=Klebsie... [more]
UBIA_KLEP31.962e-3034.314-hydroxybenzoate octaprenyltransferase OS=Klebsie... [more]
UBIA_XYLFM2.562e-3034.504-hydroxybenzoate octaprenyltransferase OS=Xylella... [more]
UBIA_THIDA2.562e-3037.864-hydroxybenzoate octaprenyltransferase OS=Thiobac... [more]
UBIA_SHISS2.562e-3034.804-hydroxybenzoate octaprenyltransferase OS=Shigell... [more]
UBIA_SHIF82.562e-3034.804-hydroxybenzoate octaprenyltransferase OS=Shigell... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA15CA07RM1 IVIA1 Citrus clementina cDNA clone IC0AAA15CA07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877882 ID=FC877882; Name=FC877882; organism=Citrus clementina; type=EST; length=925bp
CGCGTTTTCCGGAGGAGCAGATACCTAAAACCATCGTTGTCTCTTCTCCT
CAGCGGCAACAACAATCCATCTAATCCAGTCCTAAACCCTAAACTTAGCC
CTCATGTAGCCAAATTGACGAATCATTACCGTTGGATGCCAAATTCTGAA
CAAAATTTCAGATACGCATGGGTAGCAAGCATCTGTACAACACCGTCGCA
GTCAAGTGTTGAGAAAGAGACTAGTAGTAGTAATGAGAAATCATCGTGGA
TTGACTTGTATTTGCCGAGACAAGCGAGGGCTTATGCGAAGCTGGCTCGG
CTTGATAAGCCGATCGGGACGTGGCTGCTGGCTTGGCCTTGTATGTGGTC
AATTACAATGGCGGCGCCACCTGGACACTTTCCGGATTTCAAAATGATGG
CGCTCTTTGGCTGTGGCGCTCTCCTTCTACGCGGGGCCGGGTGTACCGTT
AATGACCTCCTTGATAGGGATATTGATAATATGGTGGAACGCACAAGGTT
AAGGCCCATTGCGAGTGGTCTTCTAACACCGTTTCAAGGACTTTCTTTTC
TTGGGTTTCAATTGCTTTTAGGTCTTGGGATTCTTCTCCAGTTGAATAAT
TTTAGCCGCATTCTGGGGGCTTCATCTTTGCTGTTAGTCTTCTCCTACCC
CCTCATGAAGAGGTTTACTTTTTGGCCTCAAGCCTATCTAGGTTTGACCT
TCAACTGGGGAGCCTTATTAGGATGGGCTGCAGTCAAAGGGAGTTTAGAT
CTGGCTGTTGTGTTCCCAATGTACATTTCTGGAGTTTTTTGGACTCTCGT
GTATGATACAATATATGCACATCAGGATAAAGAAGATGATTTGAAAGTTG
GTGTAAAATCTACTGCTTTGAGATTTGGGGATTCTTCTAAGGAATGGACT
ACTGGGTTCGGAATTGCATGCATAA
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