FC877882

Overview
NameFC877882
Unique NameFC877882
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length925
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC877882 vs. ExPASy Swiss-Prot
Match: UBIA_SHIDS (4-hydroxybenzoate octaprenyltransferase OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=ubiA PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 2.562e-30
Identity = 71/204 (34.80%), Postives = 104/204 (50.98%), Query Frame = 1
Query:  280 AYAKLARLDKPIGTWLLAWPCMWSITMAAPPGHFPDFKMMXXXXXXXXXXXXXXCTVNDLLDRDIDNMVERTRLRPIASGLLTPXXXXXXXXXXXXXXXXXXXXXNNFSRILGASSLLLVFSYPLMKRFTFWPQAYLGLTFNWGALLGWAAVKGSLDLAVVFPMYISGVFWTLVYDTIYAHQDKEDDLKVGVKSTALRFGDSSK 891
            A+ +L R DKPIG  LL WP +W++ +A P    P   ++              C VND  DR  D  V+RT  RP+ SG +T                      N  + +L  ++L L + YP MKR+T  PQ  LG  F W   + +AAV  S+ L+  + M+++ + W + YDT YA  D++DD+K+G+KSTA+ FG   K
Sbjct:   12 AFHRLMRTDKPIGALLLLWPTLWALWVATPG--VPQLWILAVFVAGVWLMRAAGCVVNDYADRKFDGHVKRTANRPLPSGAVTEKEARALFVVLVLISFLLVLTLNTMTILLSIAALALAWVYPFMKRYTHLPQVVLGAAFGWSIPMAFAAVSESVPLSC-WLMFLANILWAVAYDTQYAMVDRDDDVKIGIKSTAILFGQYDK 212          
BLAST of FC877882 vs. ExPASy Swiss-Prot
Match: UBIA_SHIBS (4-hydroxybenzoate octaprenyltransferase OS=Shigella boydii serotype 4 (strain Sb227) GN=ubiA PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 2.562e-30
Identity = 71/204 (34.80%), Postives = 104/204 (50.98%), Query Frame = 1
Query:  280 AYAKLARLDKPIGTWLLAWPCMWSITMAAPPGHFPDFKMMXXXXXXXXXXXXXXCTVNDLLDRDIDNMVERTRLRPIASGLLTPXXXXXXXXXXXXXXXXXXXXXNNFSRILGASSLLLVFSYPLMKRFTFWPQAYLGLTFNWGALLGWAAVKGSLDLAVVFPMYISGVFWTLVYDTIYAHQDKEDDLKVGVKSTALRFGDSSK 891
            A+ +L R DKPIG  LL WP +W++ +A P    P   ++              C VND  DR  D  V+RT  RP+ SG +T                      N  + +L  ++L L + YP MKR+T  PQ  LG  F W   + +AAV  S+ L+  + M+++ + W + YDT YA  D++DD+K+G+KSTA+ FG   K
Sbjct:   12 AFHRLMRTDKPIGALLLLWPTLWALWVATPG--VPQLWILAVFVAGVWLMRAAGCVVNDYADRKFDGHVKRTANRPLPSGAVTEKEARALFVVLVLISFLLVLTLNTMTILLSIAALALAWVYPFMKRYTHLPQVVLGAAFGWSIPMAFAAVSESVPLSC-WLMFLANILWAVAYDTQYAMVDRDDDVKIGIKSTAILFGQYDK 212          
BLAST of FC877882 vs. ExPASy Swiss-Prot
Match: UBIA_SHIB3 (4-hydroxybenzoate octaprenyltransferase OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=ubiA PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 2.562e-30
Identity = 71/204 (34.80%), Postives = 104/204 (50.98%), Query Frame = 1
Query:  280 AYAKLARLDKPIGTWLLAWPCMWSITMAAPPGHFPDFKMMXXXXXXXXXXXXXXCTVNDLLDRDIDNMVERTRLRPIASGLLTPXXXXXXXXXXXXXXXXXXXXXNNFSRILGASSLLLVFSYPLMKRFTFWPQAYLGLTFNWGALLGWAAVKGSLDLAVVFPMYISGVFWTLVYDTIYAHQDKEDDLKVGVKSTALRFGDSSK 891
            A+ +L R DKPIG  LL WP +W++ +A P    P   ++              C VND  DR  D  V+RT  RP+ SG +T                      N  + +L  ++L L + YP MKR+T  PQ  LG  F W   + +AAV  S+ L+  + M+++ + W + YDT YA  D++DD+K+G+KSTA+ FG   K
Sbjct:   12 AFHRLMRTDKPIGALLLLWPTLWALWVATPG--VPQLWILAVFVAGVWLMRAAGCVVNDYADRKFDGHVKRTANRPLPSGAVTEKEARALFVVLVLISFLLVLTLNTMTILLSIAALALAWVYPFMKRYTHLPQVVLGAAFGWSIPMAFAAVSESVPLSC-WLMFLANILWAVAYDTQYAMVDRDDDVKIGIKSTAILFGQYDK 212          
BLAST of FC877882 vs. ExPASy Swiss-Prot
Match: UBIA_PSEPK (4-hydroxybenzoate octaprenyltransferase OS=Pseudomonas putida (strain KT2440) GN=ubiA PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 2.562e-30
Identity = 70/203 (34.48%), Postives = 108/203 (53.20%), Query Frame = 1
Query:  283 YAKLARLDKPIGTWLLAWPCMWSITMAAPPGHFPDFKMMXXXXXXXXXXXXXXCTVNDLLDRDIDNMVERTRLRPIASGLLTPXXXXXXXXXXXXXXXXXXXXXNNFSRILGASSLLLVFSYPLMKRFTFWPQAYLGLTFNWGALLGWAAVKGSLDLAVVFPMYISGVFWTLVYDTIYAHQDKEDDLKVGVKSTALRFGDSSK 891
            + +L+R+D+PIG +LL WP + ++ +A      P    +              C +ND  DR +D  V+RT  RP+ASG + P                     N+ +  L   ++ L F YP MKR+T++PQ  LG  ++WG  + + A  G L  A  + +YI+ + WT+ YDT YA  D++DDLK+GVKSTA+ FGD+ +
Sbjct:   19 FVQLSRMDRPIGIYLLLWPTLSAVWIAGNGS--PTLANVLIFGLGVVLMRAAGCCINDFADRKVDGHVKRTADRPLASGRVRPREALTLFAILVGVSFLLVLCTNSRTVWLSFGAVALAFCYPFMKRYTYYPQVVLGAAYSWGIPMAFTAAGGELP-AGAWLLYIANLLWTVGYDTYYAMVDRDDDLKIGVKSTAILFGDADR 218          
BLAST of FC877882 vs. ExPASy Swiss-Prot
Match: UBIA_PSEP1 (4-hydroxybenzoate octaprenyltransferase OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=ubiA PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 2.562e-30
Identity = 70/203 (34.48%), Postives = 108/203 (53.20%), Query Frame = 1
Query:  283 YAKLARLDKPIGTWLLAWPCMWSITMAAPPGHFPDFKMMXXXXXXXXXXXXXXCTVNDLLDRDIDNMVERTRLRPIASGLLTPXXXXXXXXXXXXXXXXXXXXXNNFSRILGASSLLLVFSYPLMKRFTFWPQAYLGLTFNWGALLGWAAVKGSLDLAVVFPMYISGVFWTLVYDTIYAHQDKEDDLKVGVKSTALRFGDSSK 891
            + +L+R+D+PIG +LL WP + ++ +A      P    +              C +ND  DR +D  V+RT  RP+ASG + P                     N+ +  L   ++ L F YP MKR+T++PQ  LG  ++WG  + + A  G L  A  + +YI+ + WT+ YDT YA  D++DDLK+GVKSTA+ FGD+ +
Sbjct:   19 FVQLSRMDRPIGIYLLLWPTLSAVWIAGNGS--PTLANVLIFGLGVVLMRAAGCCINDFADRKVDGHVKRTADRPLASGRVRPREALTLFAILVGVSFLLVLCTNSRTVWLSFGAVALAFCYPFMKRYTYYPQVVLGAAYSWGIPMAFTAAGGELP-AGAWLLYIANLLWTVGYDTYYAMVDRDDDLKIGVKSTAILFGDADR 218          
BLAST of FC877882 vs. ExPASy Swiss-Prot
Match: UBIA_MARMS (4-hydroxybenzoate octaprenyltransferase OS=Marinomonas sp. (strain MWYL1) GN=ubiA PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 2.562e-30
Identity = 67/199 (33.67%), Postives = 106/199 (53.27%), Query Frame = 1
Query:  283 YAKLARLDKPIGTWLLAWPCMWSITMAAPPGHFPDFKMMXXXXXXXXXXXXXXCTVNDLLDRDIDNMVERTRLRPIASGLLTPXXXXXXXXXXXXXXXXXXXXXNNFSRILGASSLLLVFSYPLMKRFTFWPQAYLGLTFNWGALLGWAAVKGSLDLAVVFPMYISGVFWTLVYDTIYAHQDKEDDLKVGVKSTALRFG 879
            YA+L R ++PIG++LL WP +W++ +AA     P + ++              C +ND  DR +D  V+RT+ RP+ SG ++                      +  + +L    L L   YP MKR+T  PQ +LGL F+W   + ++A  G L    ++ ++++  FWT+ YDT YA  D+ DDLK+G+KSTA+ FG
Sbjct:    7 YAELTRFNRPIGSFLLMWPTLWALWLAADG--MPQWHLVIIFILGVFSMRSAGCVINDYADRKVDGFVDRTKNRPLPSGRVSEKEALMLFCALSILSFILVLFTDLRTILLSFVGLGLAALYPFMKRYTHLPQLFLGLAFSWAIPMAYSAQGGDLTDPKLWMLFVANCFWTIAYDTYYAMTDRPDDLKIGIKSTAILFG 203          
BLAST of FC877882 vs. ExPASy Swiss-Prot
Match: UBIA_ESCF3 (4-hydroxybenzoate octaprenyltransferase OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=ubiA PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 2.562e-30
Identity = 71/204 (34.80%), Postives = 104/204 (50.98%), Query Frame = 1
Query:  280 AYAKLARLDKPIGTWLLAWPCMWSITMAAPPGHFPDFKMMXXXXXXXXXXXXXXCTVNDLLDRDIDNMVERTRLRPIASGLLTPXXXXXXXXXXXXXXXXXXXXXNNFSRILGASSLLLVFSYPLMKRFTFWPQAYLGLTFNWGALLGWAAVKGSLDLAVVFPMYISGVFWTLVYDTIYAHQDKEDDLKVGVKSTALRFGDSSK 891
            A+ +L R DKPIG  LL WP +W++ +A P    P   ++              C VND  DR  D  V+RT  RP+ SG +T                      N  + +L  ++L L + YP MKR+T  PQ  LG  F W   + +AAV  S+ L+  + M+++ + W + YDT YA  D++DD+K+G+KSTA+ FG   K
Sbjct:   12 AFHRLMRTDKPIGALLLLWPTLWALWVATPG--VPPLWILAVFVAGVWLMRAAGCVVNDYADRKFDGHVKRTANRPLPSGAVTEKEARTLFVVLVLLAFLLVLTLNTMTILLSVAALALAWVYPFMKRYTHLPQVVLGAAFGWSIPMAFAAVSESVPLSC-WLMFLANILWAVAYDTQYAMVDRDDDVKIGIKSTAILFGQYDK 212          
BLAST of FC877882 vs. ExPASy Swiss-Prot
Match: UBIA_ECOUT (4-hydroxybenzoate octaprenyltransferase OS=Escherichia coli (strain UTI89 / UPEC) GN=ubiA PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 2.562e-30
Identity = 71/204 (34.80%), Postives = 104/204 (50.98%), Query Frame = 1
Query:  280 AYAKLARLDKPIGTWLLAWPCMWSITMAAPPGHFPDFKMMXXXXXXXXXXXXXXCTVNDLLDRDIDNMVERTRLRPIASGLLTPXXXXXXXXXXXXXXXXXXXXXNNFSRILGASSLLLVFSYPLMKRFTFWPQAYLGLTFNWGALLGWAAVKGSLDLAVVFPMYISGVFWTLVYDTIYAHQDKEDDLKVGVKSTALRFGDSSK 891
            A+ +L R DKPIG  LL WP +W++ +A P    P   ++              C VND  DR  D  V+RT  RP+ SG +T                      N  + +L  ++L L + YP MKR+T  PQ  LG  F W   + +AAV  S+ L+  + M+++ + W + YDT YA  D++DD+K+G+KSTA+ FG   K
Sbjct:   12 AFHRLMRTDKPIGALLLLWPTLWALWVATPG--VPQLWILAVFVAGVWLMRAAGCVVNDYADRKFDGHVKRTANRPLPSGAVTEKEARALFVVLVLISFLLVLTLNTMTILLSIAALALAWVYPFMKRYTHLPQVVLGAAFGWSIPMAFAAVSESVPLSC-WLMFLANILWAVAYDTQYAMVDRDDDVKIGIKSTAILFGQYDK 212          
BLAST of FC877882 vs. ExPASy Swiss-Prot
Match: UBIA_ECOSM (4-hydroxybenzoate octaprenyltransferase OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=ubiA PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 2.562e-30
Identity = 71/204 (34.80%), Postives = 104/204 (50.98%), Query Frame = 1
Query:  280 AYAKLARLDKPIGTWLLAWPCMWSITMAAPPGHFPDFKMMXXXXXXXXXXXXXXCTVNDLLDRDIDNMVERTRLRPIASGLLTPXXXXXXXXXXXXXXXXXXXXXNNFSRILGASSLLLVFSYPLMKRFTFWPQAYLGLTFNWGALLGWAAVKGSLDLAVVFPMYISGVFWTLVYDTIYAHQDKEDDLKVGVKSTALRFGDSSK 891
            A+ +L R DKPIG  LL WP +W++ +A P    P   ++              C VND  DR  D  V+RT  RP+ SG +T                      N  + +L  ++L L + YP MKR+T  PQ  LG  F W   + +AAV  S+ L+  + M+++ + W + YDT YA  D++DD+K+G+KSTA+ FG   K
Sbjct:   12 AFHRLMRTDKPIGALLLLWPTLWALWVATPG--VPQLWILAVFVAGVWLMRAAGCVVNDYADRKFDGHVKRTANRPLPSGAVTEKEARALFVVLVLISFLLVLTLNTMTILLSIAALALAWVYPFMKRYTHLPQVVLGAAFGWSIPMAFAAVSESVPLSC-WLMFLANILWAVAYDTQYAMVDRDDDVKIGIKSTAILFGQYDK 212          
BLAST of FC877882 vs. ExPASy Swiss-Prot
Match: UBIA_ECOSE (4-hydroxybenzoate octaprenyltransferase OS=Escherichia coli (strain SE11) GN=ubiA PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 2.562e-30
Identity = 71/204 (34.80%), Postives = 104/204 (50.98%), Query Frame = 1
Query:  280 AYAKLARLDKPIGTWLLAWPCMWSITMAAPPGHFPDFKMMXXXXXXXXXXXXXXCTVNDLLDRDIDNMVERTRLRPIASGLLTPXXXXXXXXXXXXXXXXXXXXXNNFSRILGASSLLLVFSYPLMKRFTFWPQAYLGLTFNWGALLGWAAVKGSLDLAVVFPMYISGVFWTLVYDTIYAHQDKEDDLKVGVKSTALRFGDSSK 891
            A+ +L R DKPIG  LL WP +W++ +A P    P   ++              C VND  DR  D  V+RT  RP+ SG +T                      N  + +L  ++L L + YP MKR+T  PQ  LG  F W   + +AAV  S+ L+  + M+++ + W + YDT YA  D++DD+K+G+KSTA+ FG   K
Sbjct:   12 AFHRLMRTDKPIGALLLLWPTLWALWVATPG--VPQLWILAVFVAGVWLMRAAGCVVNDYADRKFDGHVKRTANRPLPSGAVTEKEARALFVVLVLISFLLVLTLNTMTILLSIAALALAWVYPFMKRYTHLPQVVLGAAFGWSIPMAFAAVSESVPLSC-WLMFLANILWAVAYDTQYAMVDRDDDVKIGIKSTAILFGQYDK 212          
The following BLAST results are available for this feature:
BLAST of FC877882 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 235
Match NameE-valueIdentityDescription
UBIA_SHIDS2.562e-3034.804-hydroxybenzoate octaprenyltransferase OS=Shigell... [more]
UBIA_SHIBS2.562e-3034.804-hydroxybenzoate octaprenyltransferase OS=Shigell... [more]
UBIA_SHIB32.562e-3034.804-hydroxybenzoate octaprenyltransferase OS=Shigell... [more]
UBIA_PSEPK2.562e-3034.484-hydroxybenzoate octaprenyltransferase OS=Pseudom... [more]
UBIA_PSEP12.562e-3034.484-hydroxybenzoate octaprenyltransferase OS=Pseudom... [more]
UBIA_MARMS2.562e-3033.674-hydroxybenzoate octaprenyltransferase OS=Marinom... [more]
UBIA_ESCF32.562e-3034.804-hydroxybenzoate octaprenyltransferase OS=Escheri... [more]
UBIA_ECOUT2.562e-3034.804-hydroxybenzoate octaprenyltransferase OS=Escheri... [more]
UBIA_ECOSM2.562e-3034.804-hydroxybenzoate octaprenyltransferase OS=Escheri... [more]
UBIA_ECOSE2.562e-3034.804-hydroxybenzoate octaprenyltransferase OS=Escheri... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionIC0AAA15CA07RM1 IVIA1 Citrus clementina cDNA clone IC0AAA15CA07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877882 ID=FC877882; Name=FC877882; organism=Citrus clementina; type=EST; length=925bp
CGCGTTTTCCGGAGGAGCAGATACCTAAAACCATCGTTGTCTCTTCTCCT
CAGCGGCAACAACAATCCATCTAATCCAGTCCTAAACCCTAAACTTAGCC
CTCATGTAGCCAAATTGACGAATCATTACCGTTGGATGCCAAATTCTGAA
CAAAATTTCAGATACGCATGGGTAGCAAGCATCTGTACAACACCGTCGCA
GTCAAGTGTTGAGAAAGAGACTAGTAGTAGTAATGAGAAATCATCGTGGA
TTGACTTGTATTTGCCGAGACAAGCGAGGGCTTATGCGAAGCTGGCTCGG
CTTGATAAGCCGATCGGGACGTGGCTGCTGGCTTGGCCTTGTATGTGGTC
AATTACAATGGCGGCGCCACCTGGACACTTTCCGGATTTCAAAATGATGG
CGCTCTTTGGCTGTGGCGCTCTCCTTCTACGCGGGGCCGGGTGTACCGTT
AATGACCTCCTTGATAGGGATATTGATAATATGGTGGAACGCACAAGGTT
AAGGCCCATTGCGAGTGGTCTTCTAACACCGTTTCAAGGACTTTCTTTTC
TTGGGTTTCAATTGCTTTTAGGTCTTGGGATTCTTCTCCAGTTGAATAAT
TTTAGCCGCATTCTGGGGGCTTCATCTTTGCTGTTAGTCTTCTCCTACCC
CCTCATGAAGAGGTTTACTTTTTGGCCTCAAGCCTATCTAGGTTTGACCT
TCAACTGGGGAGCCTTATTAGGATGGGCTGCAGTCAAAGGGAGTTTAGAT
CTGGCTGTTGTGTTCCCAATGTACATTTCTGGAGTTTTTTGGACTCTCGT
GTATGATACAATATATGCACATCAGGATAAAGAAGATGATTTGAAAGTTG
GTGTAAAATCTACTGCTTTGAGATTTGGGGATTCTTCTAAGGAATGGACT
ACTGGGTTCGGAATTGCATGCATAA
back to top