FC877882

Overview
NameFC877882
Unique NameFC877882
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length925
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig6288 contig Ccv1_Contig6288:136..1060. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC877882 vs. ExPASy Swiss-Prot
Match: UBIA_VIBFM (4-hydroxybenzoate octaprenyltransferase OS=Vibrio fischeri (strain MJ11) GN=ubiA PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 3.346e-30
Identity = 67/207 (32.37%), Postives = 110/207 (53.14%), Query Frame = 1
Query:  271 QARAYAKLARLDKPIGTWLLAWPCMWSITMAAPPGHFPDFKMMXXXXXXXXXXXXXXCTVNDLLDRDIDNMVERTRLRPIASGLLTPXXXXXXXXXXXXXXXXXXXXXNNFSRILGASSLLLVFSYPLMKRFTFWPQAYLGLTFNWGALLGWAAVKGSLDLAVVFPMYISGVFWTLVYDTIYAHQDKEDDLKVGVKSTALRFGDSSK 891
            +A A+ +L R+++PIG+ LL WP +W++ +AA     PD+ ++              C +ND  DR +D  V+RT  RP+ SGL++                      N  + +L +  ++L  +YP MKR T+ PQ  LGL F+W   + +AA    +  +  + +++    WT+ YDT YA  D++DD+K+G+KSTA+ FG   K
Sbjct:    5 KAEAFWQLTRMNRPIGSLLLLWPTLWALFLAADG--LPDWHVLIVFVLGVVFMRSAGCVINDFADRKVDGHVKRTANRPLPSGLISSKEALSFFAVLVVCSFLLVLTMNTLTIMLSSIGIVLAIAYPFMKRVTYLPQFVLGLAFSWAIPMAYAAESNQVP-SEAWLLFVINALWTIAYDTQYAMVDRDDDVKIGIKSTAILFGRYDK 208          
BLAST of FC877882 vs. ExPASy Swiss-Prot
Match: UBIA_SALTY (4-hydroxybenzoate octaprenyltransferase OS=Salmonella typhimurium GN=ubiA PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 3.346e-30
Identity = 71/200 (35.50%), Postives = 103/200 (51.50%), Query Frame = 1
Query:  280 AYAKLARLDKPIGTWLLAWPCMWSITMAAPPGHFPDFKMMXXXXXXXXXXXXXXCTVNDLLDRDIDNMVERTRLRPIASGLLTPXXXXXXXXXXXXXXXXXXXXXNNFSRILGASSLLLVFSYPLMKRFTFWPQAYLGLTFNWGALLGWAAVKGSLDLAVVFPMYISGVFWTLVYDTIYAHQDKEDDLKVGVKSTALRFG 879
            A+ +L R DKPIG  LL WP +W++ +A P    P   ++              C VND  DR  D  V+RT  RP+ SG +T                      N  + +L  ++L L + YP MKR+T  PQ  LG  F W   + +AAV  SL L+  + M+++ + W + YDT YA  D++DD+K+G+KSTA+ FG
Sbjct:   12 AFHRLMRTDKPIGALLLLWPTLWALWVATPG--MPQLWILAVFVAGVWLMRAAGCVVNDYADRKFDGHVKRTVNRPLPSGAVTEKEARNLFVVLVLLAFLLVLTLNAMTILLSVAALALAWVYPFMKRYTHLPQVVLGAAFGWSIPMAFAAVSESLPLSC-WLMFLANILWAVAYDTQYAMVDRDDDIKIGIKSTAILFG 208          
BLAST of FC877882 vs. ExPASy Swiss-Prot
Match: UBIA_SALTI (4-hydroxybenzoate octaprenyltransferase OS=Salmonella typhi GN=ubiA PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 3.346e-30
Identity = 71/200 (35.50%), Postives = 103/200 (51.50%), Query Frame = 1
Query:  280 AYAKLARLDKPIGTWLLAWPCMWSITMAAPPGHFPDFKMMXXXXXXXXXXXXXXCTVNDLLDRDIDNMVERTRLRPIASGLLTPXXXXXXXXXXXXXXXXXXXXXNNFSRILGASSLLLVFSYPLMKRFTFWPQAYLGLTFNWGALLGWAAVKGSLDLAVVFPMYISGVFWTLVYDTIYAHQDKEDDLKVGVKSTALRFG 879
            A+ +L R DKPIG  LL WP +W++ +A P    P   ++              C VND  DR  D  V+RT  RP+ SG +T                      N  + +L  ++L L + YP MKR+T  PQ  LG  F W   + +AAV  SL L+  + M+++ + W + YDT YA  D++DD+K+G+KSTA+ FG
Sbjct:   12 AFHRLMRTDKPIGALLLLWPTLWALWVATPG--MPQLWILAVFVAGVWLMRAAGCVVNDYADRKFDGHVKRTVNRPLPSGAVTEKEARNLFVVLVLLAFLLVLTLNAMTILLSVAALALAWVYPFMKRYTHLPQVVLGAAFGWSIPMAFAAVSESLPLSC-WLMFLANILWAVAYDTQYAMVDRDDDIKIGIKSTAILFG 208          
BLAST of FC877882 vs. ExPASy Swiss-Prot
Match: UBIA_SALSV (4-hydroxybenzoate octaprenyltransferase OS=Salmonella schwarzengrund (strain CVM19633) GN=ubiA PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 3.346e-30
Identity = 71/200 (35.50%), Postives = 103/200 (51.50%), Query Frame = 1
Query:  280 AYAKLARLDKPIGTWLLAWPCMWSITMAAPPGHFPDFKMMXXXXXXXXXXXXXXCTVNDLLDRDIDNMVERTRLRPIASGLLTPXXXXXXXXXXXXXXXXXXXXXNNFSRILGASSLLLVFSYPLMKRFTFWPQAYLGLTFNWGALLGWAAVKGSLDLAVVFPMYISGVFWTLVYDTIYAHQDKEDDLKVGVKSTALRFG 879
            A+ +L R DKPIG  LL WP +W++ +A P    P   ++              C VND  DR  D  V+RT  RP+ SG +T                      N  + +L  ++L L + YP MKR+T  PQ  LG  F W   + +AAV  SL L+  + M+++ + W + YDT YA  D++DD+K+G+KSTA+ FG
Sbjct:   12 AFHRLMRTDKPIGALLLLWPTLWALWVATPG--MPQLWILAVFVAGVWLMRAAGCVVNDYADRKFDGHVKRTVNRPLPSGAVTEKEARNLFVVLVLLAFLLVLTLNAMTILLSVAALALAWVYPFMKRYTHLPQVVLGAAFGWSIPMAFAAVSESLPLSC-WLMFLANILWAVAYDTQYAMVDRDDDIKIGIKSTAILFG 208          
BLAST of FC877882 vs. ExPASy Swiss-Prot
Match: UBIA_SALPK (4-hydroxybenzoate octaprenyltransferase OS=Salmonella paratyphi A (strain AKU_12601) GN=ubiA PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 3.346e-30
Identity = 71/200 (35.50%), Postives = 103/200 (51.50%), Query Frame = 1
Query:  280 AYAKLARLDKPIGTWLLAWPCMWSITMAAPPGHFPDFKMMXXXXXXXXXXXXXXCTVNDLLDRDIDNMVERTRLRPIASGLLTPXXXXXXXXXXXXXXXXXXXXXNNFSRILGASSLLLVFSYPLMKRFTFWPQAYLGLTFNWGALLGWAAVKGSLDLAVVFPMYISGVFWTLVYDTIYAHQDKEDDLKVGVKSTALRFG 879
            A+ +L R DKPIG  LL WP +W++ +A P    P   ++              C VND  DR  D  V+RT  RP+ SG +T                      N  + +L  ++L L + YP MKR+T  PQ  LG  F W   + +AAV  SL L+  + M+++ + W + YDT YA  D++DD+K+G+KSTA+ FG
Sbjct:   12 AFHRLMRTDKPIGALLLLWPTLWALWVATPG--MPQLWILAVFVAGVWLMRAAGCVVNDYADRKFDGHVKRTVNRPLPSGAVTEKEARNLFVVLVLLAFLLVLTLNAMTILLSVAALALAWVYPFMKRYTHLPQVVLGAAFGWSIPMAFAAVSESLPLSC-WLMFLANILWAVAYDTQYAMVDRDDDIKIGIKSTAILFG 208          
BLAST of FC877882 vs. ExPASy Swiss-Prot
Match: UBIA_SALPC (4-hydroxybenzoate octaprenyltransferase OS=Salmonella paratyphi C (strain RKS4594) GN=ubiA PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 3.346e-30
Identity = 71/200 (35.50%), Postives = 103/200 (51.50%), Query Frame = 1
Query:  280 AYAKLARLDKPIGTWLLAWPCMWSITMAAPPGHFPDFKMMXXXXXXXXXXXXXXCTVNDLLDRDIDNMVERTRLRPIASGLLTPXXXXXXXXXXXXXXXXXXXXXNNFSRILGASSLLLVFSYPLMKRFTFWPQAYLGLTFNWGALLGWAAVKGSLDLAVVFPMYISGVFWTLVYDTIYAHQDKEDDLKVGVKSTALRFG 879
            A+ +L R DKPIG  LL WP +W++ +A P    P   ++              C VND  DR  D  V+RT  RP+ SG +T                      N  + +L  ++L L + YP MKR+T  PQ  LG  F W   + +AAV  SL L+  + M+++ + W + YDT YA  D++DD+K+G+KSTA+ FG
Sbjct:   12 AFHRLMRTDKPIGALLLLWPTLWALWVATPG--MPQLWILAVFVAGVWLMRAAGCVVNDYADRKFDGHVKRTVNRPLPSGAVTEKEARNLFVVLVLLAFLLVLTLNAMTILLSVAALALAWVYPFMKRYTHLPQVVLGAAFGWSIPMAFAAVSESLPLSC-WLMFLANILWAVAYDTQYAMVDRDDDIKIGIKSTAILFG 208          
BLAST of FC877882 vs. ExPASy Swiss-Prot
Match: UBIA_SALPB (4-hydroxybenzoate octaprenyltransferase OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=ubiA PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 3.346e-30
Identity = 71/200 (35.50%), Postives = 103/200 (51.50%), Query Frame = 1
Query:  280 AYAKLARLDKPIGTWLLAWPCMWSITMAAPPGHFPDFKMMXXXXXXXXXXXXXXCTVNDLLDRDIDNMVERTRLRPIASGLLTPXXXXXXXXXXXXXXXXXXXXXNNFSRILGASSLLLVFSYPLMKRFTFWPQAYLGLTFNWGALLGWAAVKGSLDLAVVFPMYISGVFWTLVYDTIYAHQDKEDDLKVGVKSTALRFG 879
            A+ +L R DKPIG  LL WP +W++ +A P    P   ++              C VND  DR  D  V+RT  RP+ SG +T                      N  + +L  ++L L + YP MKR+T  PQ  LG  F W   + +AAV  SL L+  + M+++ + W + YDT YA  D++DD+K+G+KSTA+ FG
Sbjct:   12 AFHRLMRTDKPIGALLLLWPTLWALWVATPG--MPQLWILAVFVAGVWLMRAAGCVVNDYADRKFDGHVKRTVNRPLPSGAVTEKEARNLFVVLVLLAFLLVLTLNAMTILLSVAALALAWVYPFMKRYTHLPQVVLGAAFGWSIPMAFAAVSESLPLSC-WLMFLANILWAVAYDTQYAMVDRDDDIKIGIKSTAILFG 208          
BLAST of FC877882 vs. ExPASy Swiss-Prot
Match: UBIA_SALPA (4-hydroxybenzoate octaprenyltransferase OS=Salmonella paratyphi A GN=ubiA PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 3.346e-30
Identity = 71/200 (35.50%), Postives = 103/200 (51.50%), Query Frame = 1
Query:  280 AYAKLARLDKPIGTWLLAWPCMWSITMAAPPGHFPDFKMMXXXXXXXXXXXXXXCTVNDLLDRDIDNMVERTRLRPIASGLLTPXXXXXXXXXXXXXXXXXXXXXNNFSRILGASSLLLVFSYPLMKRFTFWPQAYLGLTFNWGALLGWAAVKGSLDLAVVFPMYISGVFWTLVYDTIYAHQDKEDDLKVGVKSTALRFG 879
            A+ +L R DKPIG  LL WP +W++ +A P    P   ++              C VND  DR  D  V+RT  RP+ SG +T                      N  + +L  ++L L + YP MKR+T  PQ  LG  F W   + +AAV  SL L+  + M+++ + W + YDT YA  D++DD+K+G+KSTA+ FG
Sbjct:   12 AFHRLMRTDKPIGALLLLWPTLWALWVATPG--MPQLWILAVFVAGVWLMRAAGCVVNDYADRKFDGHVKRTVNRPLPSGAVTEKEARNLFVVLVLLAFLLVLTLNAMTILLSVAALALAWVYPFMKRYTHLPQVVLGAAFGWSIPMAFAAVSESLPLSC-WLMFLANILWAVAYDTQYAMVDRDDDIKIGIKSTAILFG 208          
BLAST of FC877882 vs. ExPASy Swiss-Prot
Match: UBIA_SALNS (4-hydroxybenzoate octaprenyltransferase OS=Salmonella newport (strain SL254) GN=ubiA PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 3.346e-30
Identity = 71/200 (35.50%), Postives = 103/200 (51.50%), Query Frame = 1
Query:  280 AYAKLARLDKPIGTWLLAWPCMWSITMAAPPGHFPDFKMMXXXXXXXXXXXXXXCTVNDLLDRDIDNMVERTRLRPIASGLLTPXXXXXXXXXXXXXXXXXXXXXNNFSRILGASSLLLVFSYPLMKRFTFWPQAYLGLTFNWGALLGWAAVKGSLDLAVVFPMYISGVFWTLVYDTIYAHQDKEDDLKVGVKSTALRFG 879
            A+ +L R DKPIG  LL WP +W++ +A P    P   ++              C VND  DR  D  V+RT  RP+ SG +T                      N  + +L  ++L L + YP MKR+T  PQ  LG  F W   + +AAV  SL L+  + M+++ + W + YDT YA  D++DD+K+G+KSTA+ FG
Sbjct:   12 AFHRLMRTDKPIGALLLLWPTLWALWVATPG--MPQLWILAVFVAGVWLMRAAGCVVNDYADRKFDGHVKRTVNRPLPSGAVTEKEARNLFVVLVLLAFLLVLTLNAMTILLSVAALALAWVYPFMKRYTHLPQVVLGAAFGWSIPMAFAAVSESLPLSC-WLMFLANILWAVAYDTQYAMVDRDDDIKIGIKSTAILFG 208          
BLAST of FC877882 vs. ExPASy Swiss-Prot
Match: UBIA_SALHS (4-hydroxybenzoate octaprenyltransferase OS=Salmonella heidelberg (strain SL476) GN=ubiA PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 3.346e-30
Identity = 71/200 (35.50%), Postives = 103/200 (51.50%), Query Frame = 1
Query:  280 AYAKLARLDKPIGTWLLAWPCMWSITMAAPPGHFPDFKMMXXXXXXXXXXXXXXCTVNDLLDRDIDNMVERTRLRPIASGLLTPXXXXXXXXXXXXXXXXXXXXXNNFSRILGASSLLLVFSYPLMKRFTFWPQAYLGLTFNWGALLGWAAVKGSLDLAVVFPMYISGVFWTLVYDTIYAHQDKEDDLKVGVKSTALRFG 879
            A+ +L R DKPIG  LL WP +W++ +A P    P   ++              C VND  DR  D  V+RT  RP+ SG +T                      N  + +L  ++L L + YP MKR+T  PQ  LG  F W   + +AAV  SL L+  + M+++ + W + YDT YA  D++DD+K+G+KSTA+ FG
Sbjct:   12 AFHRLMRTDKPIGALLLLWPTLWALWVATPG--MPQLWILAVFVAGVWLMRAAGCVVNDYADRKFDGHVKRTVNRPLPSGAVTEKEARNLFVVLVLLAFLLVLTLNAMTILLSVAALALAWVYPFMKRYTHLPQVVLGAAFGWSIPMAFAAVSESLPLSC-WLMFLANILWAVAYDTQYAMVDRDDDIKIGIKSTAILFG 208          
The following BLAST results are available for this feature:
BLAST of FC877882 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 235
Match NameE-valueIdentityDescription
UBIA_VIBFM3.346e-3032.374-hydroxybenzoate octaprenyltransferase OS=Vibrio ... [more]
UBIA_SALTY3.346e-3035.504-hydroxybenzoate octaprenyltransferase OS=Salmone... [more]
UBIA_SALTI3.346e-3035.504-hydroxybenzoate octaprenyltransferase OS=Salmone... [more]
UBIA_SALSV3.346e-3035.504-hydroxybenzoate octaprenyltransferase OS=Salmone... [more]
UBIA_SALPK3.346e-3035.504-hydroxybenzoate octaprenyltransferase OS=Salmone... [more]
UBIA_SALPC3.346e-3035.504-hydroxybenzoate octaprenyltransferase OS=Salmone... [more]
UBIA_SALPB3.346e-3035.504-hydroxybenzoate octaprenyltransferase OS=Salmone... [more]
UBIA_SALPA3.346e-3035.504-hydroxybenzoate octaprenyltransferase OS=Salmone... [more]
UBIA_SALNS3.346e-3035.504-hydroxybenzoate octaprenyltransferase OS=Salmone... [more]
UBIA_SALHS3.346e-3035.504-hydroxybenzoate octaprenyltransferase OS=Salmone... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionIC0AAA15CA07RM1 IVIA1 Citrus clementina cDNA clone IC0AAA15CA07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877882 ID=FC877882; Name=FC877882; organism=Citrus clementina; type=EST; length=925bp
CGCGTTTTCCGGAGGAGCAGATACCTAAAACCATCGTTGTCTCTTCTCCT
CAGCGGCAACAACAATCCATCTAATCCAGTCCTAAACCCTAAACTTAGCC
CTCATGTAGCCAAATTGACGAATCATTACCGTTGGATGCCAAATTCTGAA
CAAAATTTCAGATACGCATGGGTAGCAAGCATCTGTACAACACCGTCGCA
GTCAAGTGTTGAGAAAGAGACTAGTAGTAGTAATGAGAAATCATCGTGGA
TTGACTTGTATTTGCCGAGACAAGCGAGGGCTTATGCGAAGCTGGCTCGG
CTTGATAAGCCGATCGGGACGTGGCTGCTGGCTTGGCCTTGTATGTGGTC
AATTACAATGGCGGCGCCACCTGGACACTTTCCGGATTTCAAAATGATGG
CGCTCTTTGGCTGTGGCGCTCTCCTTCTACGCGGGGCCGGGTGTACCGTT
AATGACCTCCTTGATAGGGATATTGATAATATGGTGGAACGCACAAGGTT
AAGGCCCATTGCGAGTGGTCTTCTAACACCGTTTCAAGGACTTTCTTTTC
TTGGGTTTCAATTGCTTTTAGGTCTTGGGATTCTTCTCCAGTTGAATAAT
TTTAGCCGCATTCTGGGGGCTTCATCTTTGCTGTTAGTCTTCTCCTACCC
CCTCATGAAGAGGTTTACTTTTTGGCCTCAAGCCTATCTAGGTTTGACCT
TCAACTGGGGAGCCTTATTAGGATGGGCTGCAGTCAAAGGGAGTTTAGAT
CTGGCTGTTGTGTTCCCAATGTACATTTCTGGAGTTTTTTGGACTCTCGT
GTATGATACAATATATGCACATCAGGATAAAGAAGATGATTTGAAAGTTG
GTGTAAAATCTACTGCTTTGAGATTTGGGGATTCTTCTAAGGAATGGACT
ACTGGGTTCGGAATTGCATGCATAA
back to top