FC877882

Overview
NameFC877882
Unique NameFC877882
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length925
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig6288 contig Ccv1_Contig6288:136..1060. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC877882 vs. ExPASy Swiss-Prot
Match: UBIA_SALG2 (4-hydroxybenzoate octaprenyltransferase OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=ubiA PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 3.346e-30
Identity = 71/200 (35.50%), Postives = 103/200 (51.50%), Query Frame = 1
Query:  280 AYAKLARLDKPIGTWLLAWPCMWSITMAAPPGHFPDFKMMXXXXXXXXXXXXXXCTVNDLLDRDIDNMVERTRLRPIASGLLTPXXXXXXXXXXXXXXXXXXXXXNNFSRILGASSLLLVFSYPLMKRFTFWPQAYLGLTFNWGALLGWAAVKGSLDLAVVFPMYISGVFWTLVYDTIYAHQDKEDDLKVGVKSTALRFG 879
            A+ +L R DKPIG  LL WP +W++ +A P    P   ++              C VND  DR  D  V+RT  RP+ SG +T                      N  + +L  ++L L + YP MKR+T  PQ  LG  F W   + +AAV  SL L+  + M+++ + W + YDT YA  D++DD+K+G+KSTA+ FG
Sbjct:   12 AFHRLMRTDKPIGALLLLWPTLWALWVATPG--MPQLWILAVFVAGVWLMRAAGCVVNDYADRKFDGHVKRTVNRPLPSGAVTEKEARNLFVVLVLLAFLLVLTLNAMTILLSVAALALAWVYPFMKRYTHLPQVVLGAAFGWSIPMAFAAVSESLPLSC-WLMFLANILWAVAYDTQYAMVDRDDDIKIGIKSTAILFG 208          
BLAST of FC877882 vs. ExPASy Swiss-Prot
Match: UBIA_SALEP (4-hydroxybenzoate octaprenyltransferase OS=Salmonella enteritidis PT4 (strain P125109) GN=ubiA PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 3.346e-30
Identity = 71/200 (35.50%), Postives = 103/200 (51.50%), Query Frame = 1
Query:  280 AYAKLARLDKPIGTWLLAWPCMWSITMAAPPGHFPDFKMMXXXXXXXXXXXXXXCTVNDLLDRDIDNMVERTRLRPIASGLLTPXXXXXXXXXXXXXXXXXXXXXNNFSRILGASSLLLVFSYPLMKRFTFWPQAYLGLTFNWGALLGWAAVKGSLDLAVVFPMYISGVFWTLVYDTIYAHQDKEDDLKVGVKSTALRFG 879
            A+ +L R DKPIG  LL WP +W++ +A P    P   ++              C VND  DR  D  V+RT  RP+ SG +T                      N  + +L  ++L L + YP MKR+T  PQ  LG  F W   + +AAV  SL L+  + M+++ + W + YDT YA  D++DD+K+G+KSTA+ FG
Sbjct:   12 AFHRLMRTDKPIGALLLLWPTLWALWVATPG--MPQLWILAVFVAGVWLMRAAGCVVNDYADRKFDGHVKRTVNRPLPSGAVTEKEARNLFVVLVLLAFLLVLTLNAMTILLSVAALALAWVYPFMKRYTHLPQVVLGAAFGWSIPMAFAAVSESLPLSC-WLMFLANILWAVAYDTQYAMVDRDDDIKIGIKSTAILFG 208          
BLAST of FC877882 vs. ExPASy Swiss-Prot
Match: UBIA_SALDC (4-hydroxybenzoate octaprenyltransferase OS=Salmonella dublin (strain CT_02021853) GN=ubiA PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 3.346e-30
Identity = 71/200 (35.50%), Postives = 103/200 (51.50%), Query Frame = 1
Query:  280 AYAKLARLDKPIGTWLLAWPCMWSITMAAPPGHFPDFKMMXXXXXXXXXXXXXXCTVNDLLDRDIDNMVERTRLRPIASGLLTPXXXXXXXXXXXXXXXXXXXXXNNFSRILGASSLLLVFSYPLMKRFTFWPQAYLGLTFNWGALLGWAAVKGSLDLAVVFPMYISGVFWTLVYDTIYAHQDKEDDLKVGVKSTALRFG 879
            A+ +L R DKPIG  LL WP +W++ +A P    P   ++              C VND  DR  D  V+RT  RP+ SG +T                      N  + +L  ++L L + YP MKR+T  PQ  LG  F W   + +AAV  SL L+  + M+++ + W + YDT YA  D++DD+K+G+KSTA+ FG
Sbjct:   12 AFHRLMRTDKPIGALLLLWPTLWALWVATPG--MPQLWILAVFVAGVWLMRAAGCVVNDYADRKFDGHVKRTVNRPLPSGAVTEKEARNLFVVLVLLAFLLVLTLNAMTILLSVAALALAWVYPFMKRYTHLPQVVLGAAFGWSIPMAFAAVSESLPLSC-WLMFLANILWAVAYDTQYAMVDRDDDIKIGIKSTAILFG 208          
BLAST of FC877882 vs. ExPASy Swiss-Prot
Match: UBIA_SALCH (4-hydroxybenzoate octaprenyltransferase OS=Salmonella choleraesuis GN=ubiA PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 3.346e-30
Identity = 71/200 (35.50%), Postives = 103/200 (51.50%), Query Frame = 1
Query:  280 AYAKLARLDKPIGTWLLAWPCMWSITMAAPPGHFPDFKMMXXXXXXXXXXXXXXCTVNDLLDRDIDNMVERTRLRPIASGLLTPXXXXXXXXXXXXXXXXXXXXXNNFSRILGASSLLLVFSYPLMKRFTFWPQAYLGLTFNWGALLGWAAVKGSLDLAVVFPMYISGVFWTLVYDTIYAHQDKEDDLKVGVKSTALRFG 879
            A+ +L R DKPIG  LL WP +W++ +A P    P   ++              C VND  DR  D  V+RT  RP+ SG +T                      N  + +L  ++L L + YP MKR+T  PQ  LG  F W   + +AAV  SL L+  + M+++ + W + YDT YA  D++DD+K+G+KSTA+ FG
Sbjct:   12 AFHRLMRTDKPIGALLLLWPTLWALWVATPG--MPQLWILAVFVAGVWLMRAAGCVVNDYADRKFDGHVKRTVNRPLPSGAVTEKEARNLFVVLVLLAFLLVLTLNAMTILLSVAALALAWVYPFMKRYTHLPQVVLGAAFGWSIPMAFAAVSESLPLSC-WLMFLANILWAVAYDTQYAMVDRDDDIKIGIKSTAILFG 208          
BLAST of FC877882 vs. ExPASy Swiss-Prot
Match: UBIA_SALAR (4-hydroxybenzoate octaprenyltransferase OS=Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980) GN=ubiA PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 3.346e-30
Identity = 72/204 (35.29%), Postives = 104/204 (50.98%), Query Frame = 1
Query:  280 AYAKLARLDKPIGTWLLAWPCMWSITMAAPPGHFPDFKMMXXXXXXXXXXXXXXCTVNDLLDRDIDNMVERTRLRPIASGLLTPXXXXXXXXXXXXXXXXXXXXXNNFSRILGASSLLLVFSYPLMKRFTFWPQAYLGLTFNWGALLGWAAVKGSLDLAVVFPMYISGVFWTLVYDTIYAHQDKEDDLKVGVKSTALRFGDSSK 891
            A+ +L R DKPIG  LL WP +W++ +A P    P   ++              C VND  DR  D  V+RT  RP+ SG +T                      N  + +L  ++L L + YP MKR+T  PQ  LG  F W   + +AAV  SL L+  + M+++ + W + YDT YA  D++DD+K+G+KSTA+ FG   K
Sbjct:   12 AFHRLMRTDKPIGALLLLWPTLWALWVATPG--MPQLWILAVFVAGVWLMRAAGCVVNDYADRKFDGHVKRTVNRPLPSGAVTEKEARNLFVVLVLLAFLLVMTLNVMTILLSVAALALAWVYPFMKRYTHLPQVVLGAAFGWSIPMAFAAVSESLPLSC-WLMFLANILWAVAYDTQYAMVDRDDDIKIGIKSTAILFGRYDK 212          
BLAST of FC877882 vs. ExPASy Swiss-Prot
Match: UBIA_SALA4 (4-hydroxybenzoate octaprenyltransferase OS=Salmonella agona (strain SL483) GN=ubiA PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 3.346e-30
Identity = 71/200 (35.50%), Postives = 103/200 (51.50%), Query Frame = 1
Query:  280 AYAKLARLDKPIGTWLLAWPCMWSITMAAPPGHFPDFKMMXXXXXXXXXXXXXXCTVNDLLDRDIDNMVERTRLRPIASGLLTPXXXXXXXXXXXXXXXXXXXXXNNFSRILGASSLLLVFSYPLMKRFTFWPQAYLGLTFNWGALLGWAAVKGSLDLAVVFPMYISGVFWTLVYDTIYAHQDKEDDLKVGVKSTALRFG 879
            A+ +L R DKPIG  LL WP +W++ +A P    P   ++              C VND  DR  D  V+RT  RP+ SG +T                      N  + +L  ++L L + YP MKR+T  PQ  LG  F W   + +AAV  SL L+  + M+++ + W + YDT YA  D++DD+K+G+KSTA+ FG
Sbjct:   12 AFHRLMRTDKPIGALLLLWPTLWALWVATPG--MPQLWILAVFVAGVWLMRAAGCVVNDYADRKFDGHVKRTVNRPLPSGAVTEKEARNLFVVLVLLAFLLVLTLNAMTILLSVAALALAWVYPFMKRYTHLPQVVLGAAFGWSIPMAFAAVSESLPLSC-WLMFLANILWAVAYDTQYAMVDRDDDIKIGIKSTAILFG 208          
BLAST of FC877882 vs. ExPASy Swiss-Prot
Match: UBIA_PSEPW (4-hydroxybenzoate octaprenyltransferase OS=Pseudomonas putida (strain W619) GN=ubiA PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 3.346e-30
Identity = 70/203 (34.48%), Postives = 108/203 (53.20%), Query Frame = 1
Query:  283 YAKLARLDKPIGTWLLAWPCMWSITMAAPPGHFPDFKMMXXXXXXXXXXXXXXCTVNDLLDRDIDNMVERTRLRPIASGLLTPXXXXXXXXXXXXXXXXXXXXXNNFSRILGASSLLLVFSYPLMKRFTFWPQAYLGLTFNWGALLGWAAVKGSLDLAVVFPMYISGVFWTLVYDTIYAHQDKEDDLKVGVKSTALRFGDSSK 891
            + +L+R+D+PIG +LL WP + ++ +A      P    +              C +ND  DR +D  V+RT  RP+ASG + P                     N+ +  L   ++ L F YP MKR+T++PQ  LG  ++WG  + + A  G L  A  + +YI+ + WT+ YDT YA  D++DDLK+GVKSTA+ FG+S +
Sbjct:   19 FIQLSRMDRPIGIYLLLWPTLTAVWIAGLGS--PTLANVLIFGLGVVLMRAAGCCINDFADRKVDGHVKRTADRPLASGRVKPREALALFGILVAVSFLLVLCTNSKTVWLSFGAVALAFCYPFMKRYTYYPQVVLGAAYSWGIPMAFTAAGGELP-ASAWLLYIANLLWTVGYDTYYAMVDRDDDLKIGVKSTAILFGESDR 218          
BLAST of FC877882 vs. ExPASy Swiss-Prot
Match: UBIA_BURPP (4-hydroxybenzoate octaprenyltransferase OS=Burkholderia phytofirmans (strain DSM 17436 / PsJN) GN=ubiA PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 4.370e-30
Identity = 70/199 (35.18%), Postives = 110/199 (55.28%), Query Frame = 1
Query:  283 YAKLARLDKPIGTWLLAWPCMWSITMAAPPGHFPDFKMMXXXXXXXXXXXXXXCTVNDLLDRDIDNMVERTRLRPIASGLLTPXXXXXXXXXXXXXXXXXXXXXNNFSRILGASSLLLVFSYPLMKRFTFWPQAYLGLTFNWGALLGWAAVKGSLDLAVVFPMYISGVFWTLVYDTIYAHQDKEDDLKVGVKSTALRFG 879
            Y +L R+DKPIG+ LL WP + ++ +A+  GH P + ++              C +ND  DRD D  V+RT  RPI SG +                       N  ++ L  ++L +  SYP  KRF   PQAYLG+ F +G  + +AA++G + L + + M ++ VFW++ YDT YA  D++DD+K+G++++AL FG
Sbjct:    8 YLRLVRMDKPIGSLLLLWPTLNALWIASD-GH-PTWPLLVIFTVGTVLMRSAGCAINDYADRDFDRYVKRTENRPITSGKIKAWEAVALAAALSLLAFLLILPLNTLTKELSVAALFVAGSYPFTKRFFAIPQAYLGIAFGFGIPMAFAAIQGHVPL-LAWVMLLANVFWSVAYDTEYAMVDRDDDIKIGIRTSALTFG 203          
BLAST of FC877882 vs. ExPASy Swiss-Prot
Match: UBIA_ALISL (4-hydroxybenzoate octaprenyltransferase OS=Aliivibrio salmonicida (strain LFI1238) GN=ubiA PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 4.370e-30
Identity = 68/207 (32.85%), Postives = 109/207 (52.66%), Query Frame = 1
Query:  271 QARAYAKLARLDKPIGTWLLAWPCMWSITMAAPPGHFPDFKMMXXXXXXXXXXXXXXCTVNDLLDRDIDNMVERTRLRPIASGLLTPXXXXXXXXXXXXXXXXXXXXXNNFSRILGASSLLLVFSYPLMKRFTFWPQAYLGLTFNWGALLGWAAVKGSLDLAVVFPMYISGVFWTLVYDTIYAHQDKEDDLKVGVKSTALRFGDSSK 891
            +A+A+ +L R+++PIG+ LL WP +W++ +AA     PD+ ++              C +ND  DR +D  V+RT  RP+ SGL++                      N  + +L +  +LL  +YP MKR T+ PQ  LGL F+W   + +AA    +     + +++    WT+ YDT YA  D++DDL +G+KSTA+ FG   K
Sbjct:    5 KAKAFWQLTRMNRPIGSLLLLWPTLWALFLAADG--IPDWHVLIVFILGVVFMRSAGCVINDFADRKVDGHVKRTANRPLPSGLVSSKEALILFSVLVTCSFILVLTMNTLTIMLSSIGVLLAIAYPFMKRITYLPQFVLGLAFSWAIPMAYAAESNQVP-PEAWLLFVINAVWTIAYDTQYAMVDRDDDLNIGIKSTAILFGRFDK 208          
BLAST of FC877882 vs. ExPASy Swiss-Prot
Match: UBIA_VIBF1 (4-hydroxybenzoate octaprenyltransferase OS=Vibrio fischeri (strain ATCC 700601 / ES114) GN=ubiA PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 7.454e-30
Identity = 67/207 (32.37%), Postives = 108/207 (52.17%), Query Frame = 1
Query:  271 QARAYAKLARLDKPIGTWLLAWPCMWSITMAAPPGHFPDFKMMXXXXXXXXXXXXXXCTVNDLLDRDIDNMVERTRLRPIASGLLTPXXXXXXXXXXXXXXXXXXXXXNNFSRILGASSLLLVFSYPLMKRFTFWPQAYLGLTFNWGALLGWAAVKGSLDLAVVFPMYISGVFWTLVYDTIYAHQDKEDDLKVGVKSTALRFGDSSK 891
            +A A+ +L R+++PIG+ LL WP +W++ +AA     PD+ ++              C +ND  DR +D  V+RT  RP+ SGL++                      N  + +L    ++L  +YP MKR T+ PQ  LGL F+W   + +AA    +     + +++    WT+ YDT YA  D++DD+K+G+KSTA+ FG   K
Sbjct:    5 KAEAFWQLTRMNRPIGSLLLLWPTLWALFLAADG--LPDWHVLIVFVLGVVFMRSAGCVINDFADRKVDGHVKRTANRPLPSGLISSKEALSLFAVLVVCSFLLVLTMNTLTIMLSGIGIVLAIAYPFMKRVTYLPQFVLGLAFSWAIPMAYAAESNQVP-PEAWLLFVINALWTIAYDTQYAMVDRDDDVKIGIKSTAILFGRYDK 208          
The following BLAST results are available for this feature:
BLAST of FC877882 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 235
Match NameE-valueIdentityDescription
UBIA_SALG23.346e-3035.504-hydroxybenzoate octaprenyltransferase OS=Salmone... [more]
UBIA_SALEP3.346e-3035.504-hydroxybenzoate octaprenyltransferase OS=Salmone... [more]
UBIA_SALDC3.346e-3035.504-hydroxybenzoate octaprenyltransferase OS=Salmone... [more]
UBIA_SALCH3.346e-3035.504-hydroxybenzoate octaprenyltransferase OS=Salmone... [more]
UBIA_SALAR3.346e-3035.294-hydroxybenzoate octaprenyltransferase OS=Salmone... [more]
UBIA_SALA43.346e-3035.504-hydroxybenzoate octaprenyltransferase OS=Salmone... [more]
UBIA_PSEPW3.346e-3034.484-hydroxybenzoate octaprenyltransferase OS=Pseudom... [more]
UBIA_BURPP4.370e-3035.184-hydroxybenzoate octaprenyltransferase OS=Burkhol... [more]
UBIA_ALISL4.370e-3032.854-hydroxybenzoate octaprenyltransferase OS=Aliivib... [more]
UBIA_VIBF17.454e-3032.374-hydroxybenzoate octaprenyltransferase OS=Vibrio ... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA15CA07RM1 IVIA1 Citrus clementina cDNA clone IC0AAA15CA07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877882 ID=FC877882; Name=FC877882; organism=Citrus clementina; type=EST; length=925bp
CGCGTTTTCCGGAGGAGCAGATACCTAAAACCATCGTTGTCTCTTCTCCT
CAGCGGCAACAACAATCCATCTAATCCAGTCCTAAACCCTAAACTTAGCC
CTCATGTAGCCAAATTGACGAATCATTACCGTTGGATGCCAAATTCTGAA
CAAAATTTCAGATACGCATGGGTAGCAAGCATCTGTACAACACCGTCGCA
GTCAAGTGTTGAGAAAGAGACTAGTAGTAGTAATGAGAAATCATCGTGGA
TTGACTTGTATTTGCCGAGACAAGCGAGGGCTTATGCGAAGCTGGCTCGG
CTTGATAAGCCGATCGGGACGTGGCTGCTGGCTTGGCCTTGTATGTGGTC
AATTACAATGGCGGCGCCACCTGGACACTTTCCGGATTTCAAAATGATGG
CGCTCTTTGGCTGTGGCGCTCTCCTTCTACGCGGGGCCGGGTGTACCGTT
AATGACCTCCTTGATAGGGATATTGATAATATGGTGGAACGCACAAGGTT
AAGGCCCATTGCGAGTGGTCTTCTAACACCGTTTCAAGGACTTTCTTTTC
TTGGGTTTCAATTGCTTTTAGGTCTTGGGATTCTTCTCCAGTTGAATAAT
TTTAGCCGCATTCTGGGGGCTTCATCTTTGCTGTTAGTCTTCTCCTACCC
CCTCATGAAGAGGTTTACTTTTTGGCCTCAAGCCTATCTAGGTTTGACCT
TCAACTGGGGAGCCTTATTAGGATGGGCTGCAGTCAAAGGGAGTTTAGAT
CTGGCTGTTGTGTTCCCAATGTACATTTCTGGAGTTTTTTGGACTCTCGT
GTATGATACAATATATGCACATCAGGATAAAGAAGATGATTTGAAAGTTG
GTGTAAAATCTACTGCTTTGAGATTTGGGGATTCTTCTAAGGAATGGACT
ACTGGGTTCGGAATTGCATGCATAA
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