FC877882

Overview
NameFC877882
Unique NameFC877882
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length925
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig6288 contig Ccv1_Contig6288:136..1060. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC877882 vs. ExPASy Swiss-Prot
Match: UBIA_FRATT (4-hydroxybenzoate octaprenyltransferase OS=Francisella tularensis subsp. tularensis GN=ubiA PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 2.481e-25
Identity = 65/205 (31.71%), Postives = 102/205 (49.76%), Query Frame = 1
Query:  268 RQARAYAKLARLDKPIGTWLLAWPCMWSITMAAPPGHFPDFKMMXXXXXXXXXXXXXXCTVNDLLDRDIDNMVERTRLRPIASGLLTPXXXXXXXXXXXXXXXXXXXXXNNFSRILGASSLLLVFSYPLMKRFTFWPQAYLGLTFNWGALLGWAAVKGSLDLAVVFPMYISGVFWTLVYDTIYAHQDKEDDLKVGVKSTALRFGD 882
            +Q +AY  L RL +PI   L+ WP + ++ +A+     PD   +              C +ND+ D D D  V RT  RP+ SG L+                      N ++ +L   +L L   YP  KRF   PQ  LGL FN+G  + ++ ++  + +   +  YI+ + WT+ YDTIYA  D+E DL++G+KS+A+ FG+
Sbjct:    4 QQLKAYFMLMRLHRPIPILLILWPTLTALVLASHG--LPDISYLVIFTIGVVVMRTVGCIINDIADVDFDKHVARTNTRPLTSGQLSIKNAIWLCISLTLVAFICVLFLNLYTILLSFVALFLAILYPFCKRFFAIPQLILGLAFNFGIFMAFSTIQNQIPVEA-WIFYIATICWTIAYDTIYALADREFDLEIGIKSSAVLFGN 205          
BLAST of FC877882 vs. ExPASy Swiss-Prot
Match: UBIA_FRAT1 (4-hydroxybenzoate octaprenyltransferase OS=Francisella tularensis subsp. tularensis (strain FSC 198) GN=ubiA PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 2.481e-25
Identity = 65/205 (31.71%), Postives = 102/205 (49.76%), Query Frame = 1
Query:  268 RQARAYAKLARLDKPIGTWLLAWPCMWSITMAAPPGHFPDFKMMXXXXXXXXXXXXXXCTVNDLLDRDIDNMVERTRLRPIASGLLTPXXXXXXXXXXXXXXXXXXXXXNNFSRILGASSLLLVFSYPLMKRFTFWPQAYLGLTFNWGALLGWAAVKGSLDLAVVFPMYISGVFWTLVYDTIYAHQDKEDDLKVGVKSTALRFGD 882
            +Q +AY  L RL +PI   L+ WP + ++ +A+     PD   +              C +ND+ D D D  V RT  RP+ SG L+                      N ++ +L   +L L   YP  KRF   PQ  LGL FN+G  + ++ ++  + +   +  YI+ + WT+ YDTIYA  D+E DL++G+KS+A+ FG+
Sbjct:    4 QQLKAYFMLMRLHRPIPILLILWPTLTALVLASHG--LPDISYLVIFTIGVVVMRTVGCIINDIADVDFDKHVARTNTRPLTSGQLSIKNAIWLCISLTLVAFICVLFLNLYTILLSFVALFLAILYPFCKRFFAIPQLILGLAFNFGIFMAFSTIQNQIPVEA-WIFYIATICWTIAYDTIYALADREFDLEIGIKSSAVLFGN 205          
BLAST of FC877882 vs. ExPASy Swiss-Prot
Match: UBIA_DIAST (4-hydroxybenzoate octaprenyltransferase OS=Diaphorobacter sp. (strain TPSY) GN=ubiA PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 3.241e-25
Identity = 67/214 (31.31%), Postives = 106/214 (49.53%), Query Frame = 1
Query:  283 YAKLARLDKPIGTWLLAWPCMWSITMAAPPGHFPDFKMMXXXXXXXXXXXXXXCTVNDLLDRDIDNMVERTRLRPIASGLLTPXXXXXXXXXXXXXXXXXXXXXNNFSRILGASSLLLVFSYPLMKRFTFWPQAYLGLTFNWGALLGWAAVKGSLDLAVVFPMYISGVFWTLVYDTIYAHQDKEDDLKVGVKSTALRFGDSSKEWTTGFGIACI 924
            Y  L R ++P G  +L WP + ++ +AA    FP + ++              CT+ND+ DRD D  V+RT  RPI SG L                          +      ++L    YP  KRF   PQA+LG+ FN+G ++ +AAV+G +  A  + ++++ +F  L YDT YA  D++DDLK+G+K++A+  G        GF + C+
Sbjct:   13 YLDLIRWNRPAGWLVLVWPTLAALWVAADG--FPGWHLLAVFVAGTVLMRSAGCTINDIADRDFDRHVKRTTQRPITSGQLGVREAALVGVVLTLVAFVLVLTTRWEAVAWSVPAVLFTILYPFTKRFFAMPQAFLGIAFNFGIVIAFAAVQGRVP-ATAWVLWLANLFLVLAYDTEYAMVDRDDDLKIGMKTSAITLGRFDVAAIMGFFVLCL 223          
BLAST of FC877882 vs. ExPASy Swiss-Prot
Match: UBIA_ACISJ (4-hydroxybenzoate octaprenyltransferase OS=Acidovorax sp. (strain JS42) GN=ubiA PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 3.241e-25
Identity = 67/214 (31.31%), Postives = 106/214 (49.53%), Query Frame = 1
Query:  283 YAKLARLDKPIGTWLLAWPCMWSITMAAPPGHFPDFKMMXXXXXXXXXXXXXXCTVNDLLDRDIDNMVERTRLRPIASGLLTPXXXXXXXXXXXXXXXXXXXXXNNFSRILGASSLLLVFSYPLMKRFTFWPQAYLGLTFNWGALLGWAAVKGSLDLAVVFPMYISGVFWTLVYDTIYAHQDKEDDLKVGVKSTALRFGDSSKEWTTGFGIACI 924
            Y  L R ++P G  +L WP + ++ +AA    FP + ++              CT+ND+ DRD D  V+RT  RPI SG L                          +      ++L    YP  KRF   PQA+LG+ FN+G ++ +AAV+G +  A  + ++++ +F  L YDT YA  D++DDLK+G+K++A+  G        GF + C+
Sbjct:   13 YLDLIRWNRPAGWLVLVWPTLAALWVAADG--FPGWHLLAVFVAGTVLMRSAGCTINDIADRDFDRHVKRTTQRPITSGQLGVREAALVGVVLTLVAFVLVLTTRWEAVAWSVPAVLFTILYPFTKRFFAMPQAFLGIAFNFGIVIAFAAVQGRVP-ATAWVLWLANLFLVLAYDTEYAMVDRDDDLKIGMKTSAITLGRFDVAAIMGFFVLCL 223          
BLAST of FC877882 vs. ExPASy Swiss-Prot
Match: UBIA_VEREI (4-hydroxybenzoate octaprenyltransferase OS=Verminephrobacter eiseniae (strain EF01-2) GN=ubiA PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 3.583e-24
Identity = 63/199 (31.66%), Postives = 100/199 (50.25%), Query Frame = 1
Query:  283 YAKLARLDKPIGTWLLAWPCMWSITMAAPPGHFPDFKMMXXXXXXXXXXXXXXCTVNDLLDRDIDNMVERTRLRPIASGLLTPXXXXXXXXXXXXXXXXXXXXXNNFSRILGASSLLLVFSYPLMKRFTFWPQAYLGLTFNWGALLGWAAVKGSLDLAVVFPMYISGVFWTLVYDTIYAHQDKEDDLKVGVKSTALRFG 879
            Y  L R ++P G  +  WP + ++ +AA    FP + ++              C VND+ DRD D  V+RT  RP+ +G +                       N  +      +LL+  +YP  KR    PQ  LG+ FN+G +L +AAV+G +  AV + +++  +FW L YDT YA  D++DDLK+G+K++A+  G
Sbjct:   12 YLDLIRWNRPAGWLVCLWPTLSALWVAADG--FPGWHLLLVFVLGTCIMRSAGCCVNDVADRDFDRHVKRTAQRPVTTGAVGVKEALAVGAVLALLAFGLVLSTNAATIAWSVPALLVAIAYPYAKRLVSMPQTVLGIAFNFGIVLAFAAVQGRVP-AVAWWLWLGTMFWVLAYDTEYAMVDRDDDLKIGIKTSAITLG 207          
BLAST of FC877882 vs. ExPASy Swiss-Prot
Match: UBIA_METPP (4-hydroxybenzoate octaprenyltransferase OS=Methylibium petroleiphilum (strain PM1) GN=ubiA PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 4.680e-24
Identity = 66/216 (30.56%), Postives = 106/216 (49.07%), Query Frame = 1
Query:  265 PRQARAYAKLARLDKPIGTWLLAWPCMWSITMAAPPGHFPDFKMMXXXXXXXXXXXXXXCTVNDLLDRDIDNMVERTRLRPIASGLLTPXXXXXXXXXXXXXXXXXXXXXNNFSRILGASSLLLVFSYPLMKRFTFWPQAYLGLTFNWGALLGWAAVKG--------SLDLAV---VFPMYISGVFWTLVYDTIYAHQDKEDDLKVGVKSTALRFG 879
            P +   Y +L R D+P G  LL WP + ++ +AA  G FP + ++              C +ND+ DR+ D  V+RT  RP+  G ++                      N  +  L   +L +  +YP  KR    PQA LG+ F++G  + ++AV+G        +L+ AV    + + I  +FW L YDT YA  D++DDLK+G+K++A+  G
Sbjct:   11 PSRLTLYRQLIRWDRPAGWLLLLWPTLGALWLAA--GGFPGWHLLAVFTLGTVLMRSAGCCINDVADREFDRHVKRTAERPVTRGAVSVKEALAVGAVLALAAFALVLTTNALTIALSFPALAVAVAYPYAKRCVAMPQAVLGVAFSFGIPMAFSAVRGGNGAWGLAALNAAVPWWAWGLLIGNLFWVLAYDTEYAMVDRDDDLKIGIKTSAITLG 224          
BLAST of FC877882 vs. ExPASy Swiss-Prot
Match: UBIA_ACIAC (4-hydroxybenzoate octaprenyltransferase OS=Acidovorax avenae subsp. citrulli (strain AAC00-1) GN=ubiA PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 1.043e-23
Identity = 63/205 (30.73%), Postives = 99/205 (48.29%), Query Frame = 1
Query:  265 PRQARAYAKLARLDKPIGTWLLAWPCMWSITMAAPPGHFPDFKMMXXXXXXXXXXXXXXCTVNDLLDRDIDNMVERTRLRPIASGLLTPXXXXXXXXXXXXXXXXXXXXXNNFSRILGASSLLLVFSYPLMKRFTFWPQAYLGLTFNWGALLGWAAVKGSLDLAVVFPMYISGVFWTLVYDTIYAHQDKEDDLKVGVKSTALRFG 879
            P +   Y  L R  +P G  LL WP + ++ +AA  G FP + ++              C VND+ DRD D  V+RT  RP+ SG ++                      N  +      +L +  +YP  KRF   PQA LG+ F+ G  + + AV G++ +   + + +  + W L YDT YA  D++DDLK+G+K++A+  G
Sbjct:   12 PSRLALYLDLIRWSRPAGWLLLLWPTLSALWIAA--GGFPGWHLLAVFTLGTILMRSAGCCVNDVADRDFDRHVKRTAQRPVTSGAVSVREALGVGAVLALVSFGLVLTTNAATIAWSLPALAVTIAYPFAKRFVSMPQAVLGVAFSMGIPMAFTAVGGAVPMLAAW-LVLGNLCWVLAYDTEYAMVDRDDDLKIGMKTSAITLG 213          
BLAST of FC877882 vs. ExPASy Swiss-Prot
Match: UBIA_RHOFD (4-hydroxybenzoate octaprenyltransferase OS=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) GN=ubiA PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.778e-23
Identity = 62/207 (29.95%), Postives = 104/207 (50.24%), Query Frame = 1
Query:  265 PRQARA--YAKLARLDKPIGTWLLAWPCMWSITMAAPPGHFPDFKMMXXXXXXXXXXXXXXCTVNDLLDRDIDNMVERTRLRPIASGLLTPXXXXXXXXXXXXXXXXXXXXXNNFSRILGASSLLLVFSYPLMKRFTFWPQAYLGLTFNWGALLGWAAVKGSLDLAVVFPMYISGVFWTLVYDTIYAHQDKEDDLKVGVKSTALRFG 879
            P Q+R   Y  L R ++P G  LL WP + ++ +AA  G FP + ++              C +ND+ DRD D  V+RT  RP+ +G ++                      N  +  +  ++L +  +YP  KR+   PQA LG+ F  G  + +AAV G +   + + + +  +FW L YDT YA  D++DD+++G+K++A+  G
Sbjct:   11 PLQSRLALYLDLIRWNRPAGWLLLLWPTLSALWVAA--GGFPGWHLLSVFTLGTILMRSAGCCINDVADRDFDRHVKRTAARPVTTGAVSVKEALVLGAVLALLAFALVLTTNAITIGISGAALAITLAYPYAKRYVSMPQAVLGVAFGMGIPMAFAAVLGEVP-RLAWLLMLGNLFWVLAYDTEYAMVDRDDDIRLGLKTSAITLG 214          
BLAST of FC877882 vs. ExPASy Swiss-Prot
Match: UBIA_POLNA (4-hydroxybenzoate octaprenyltransferase OS=Polaromonas naphthalenivorans (strain CJ2) GN=ubiA PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.778e-23
Identity = 60/205 (29.27%), Postives = 103/205 (50.24%), Query Frame = 1
Query:  265 PRQARAYAKLARLDKPIGTWLLAWPCMWSITMAAPPGHFPDFKMMXXXXXXXXXXXXXXCTVNDLLDRDIDNMVERTRLRPIASGLLTPXXXXXXXXXXXXXXXXXXXXXNNFSRILGASSLLLVFSYPLMKRFTFWPQAYLGLTFNWGALLGWAAVKGSLDLAVVFPMYISGVFWTLVYDTIYAHQDKEDDLKVGVKSTALRFG 879
            P +   Y +L R ++P G  LL WP + ++ +A+    FP + ++              C +ND+ DRD D  V+RT  RP+ SG ++                      N  +     ++L +  +YP  KR+   PQA LG+ F+ G L+ +AAV+  +   + + + +  +FW + YDT YA  D++DDLK+G+K++A+  G
Sbjct:    6 PSKFSLYLQLIRWNRPAGWLLLLWPTLSALWLASHG--FPGWHLVTVFTLGTFLMRSAGCCINDVADRDFDRHVKRTAQRPVTSGAVSVREALGLGAVLALLAFGLVLTTNAVTIAWSFAALAVTLAYPFAKRYVSMPQAVLGVAFSCGILMAFAAVQSRVP-PLAWALLLGNLFWVIAYDTEYAMVDRDDDLKIGMKTSAITLG 207          
BLAST of FC877882 vs. ExPASy Swiss-Prot
Match: UBIA_LEGPC (4-hydroxybenzoate octaprenyltransferase OS=Legionella pneumophila (strain Corby) GN=ubiA PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.778e-23
Identity = 74/203 (36.45%), Postives = 98/203 (48.28%), Query Frame = 1
Query:  280 AYAKLARLDKPIGTWLLAWPCMWSITMAAPPGHFPDFKMMXXXXXXXXXXXXXXCTVNDLLDRDIDNMVERTRLRPIASG--LLTPXXXXXXXXXXXXXXXXXXXXXNNFSRILGASSLLLVFSYPLMKRFTFWPQAYLGLTFNWGALLGWAAVKGSL--DLAVVFPMYISGVFWTLVYDTIYAHQDKEDDLKVGVKSTALRF 876
            AY +L RL+KPIG  LL +P  W++ MA     FP   ++              C +ND+ DR ID  V RT+ RP+ SG   L+                      N F       S+L+ F YP  KRF   PQ  LGL F+ G  + + A   +L  D  V+F +  S   W + YDT+YA  DK DDLK+GVKSTA+ F
Sbjct:    6 AYVRLLRLNKPIGILLLWYPTAWALWMANQG--FPSIDLLMIFLFGTVFMRSAGCVINDIADRHIDRHVARTQFRPLTSGEVSLSEAFILLFILLCASLLLLLKLPINCF--YFAVISVLITFLYPFCKRFLNAPQLILGLAFSMGIPMAFIASGKNLNSDFIVLFLINFS---WIIAYDTMYAMTDKADDLKIGVKSTAIYF 201          
The following BLAST results are available for this feature:
BLAST of FC877882 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 235
Match NameE-valueIdentityDescription
UBIA_FRATT2.481e-2531.714-hydroxybenzoate octaprenyltransferase OS=Francis... [more]
UBIA_FRAT12.481e-2531.714-hydroxybenzoate octaprenyltransferase OS=Francis... [more]
UBIA_DIAST3.241e-2531.314-hydroxybenzoate octaprenyltransferase OS=Diaphor... [more]
UBIA_ACISJ3.241e-2531.314-hydroxybenzoate octaprenyltransferase OS=Acidovo... [more]
UBIA_VEREI3.583e-2431.664-hydroxybenzoate octaprenyltransferase OS=Vermine... [more]
UBIA_METPP4.680e-2430.564-hydroxybenzoate octaprenyltransferase OS=Methyli... [more]
UBIA_ACIAC1.043e-2330.734-hydroxybenzoate octaprenyltransferase OS=Acidovo... [more]
UBIA_RHOFD1.778e-2329.954-hydroxybenzoate octaprenyltransferase OS=Rhodofe... [more]
UBIA_POLNA1.778e-2329.274-hydroxybenzoate octaprenyltransferase OS=Polarom... [more]
UBIA_LEGPC1.778e-2336.454-hydroxybenzoate octaprenyltransferase OS=Legione... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA15CA07RM1 IVIA1 Citrus clementina cDNA clone IC0AAA15CA07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877882 ID=FC877882; Name=FC877882; organism=Citrus clementina; type=EST; length=925bp
CGCGTTTTCCGGAGGAGCAGATACCTAAAACCATCGTTGTCTCTTCTCCT
CAGCGGCAACAACAATCCATCTAATCCAGTCCTAAACCCTAAACTTAGCC
CTCATGTAGCCAAATTGACGAATCATTACCGTTGGATGCCAAATTCTGAA
CAAAATTTCAGATACGCATGGGTAGCAAGCATCTGTACAACACCGTCGCA
GTCAAGTGTTGAGAAAGAGACTAGTAGTAGTAATGAGAAATCATCGTGGA
TTGACTTGTATTTGCCGAGACAAGCGAGGGCTTATGCGAAGCTGGCTCGG
CTTGATAAGCCGATCGGGACGTGGCTGCTGGCTTGGCCTTGTATGTGGTC
AATTACAATGGCGGCGCCACCTGGACACTTTCCGGATTTCAAAATGATGG
CGCTCTTTGGCTGTGGCGCTCTCCTTCTACGCGGGGCCGGGTGTACCGTT
AATGACCTCCTTGATAGGGATATTGATAATATGGTGGAACGCACAAGGTT
AAGGCCCATTGCGAGTGGTCTTCTAACACCGTTTCAAGGACTTTCTTTTC
TTGGGTTTCAATTGCTTTTAGGTCTTGGGATTCTTCTCCAGTTGAATAAT
TTTAGCCGCATTCTGGGGGCTTCATCTTTGCTGTTAGTCTTCTCCTACCC
CCTCATGAAGAGGTTTACTTTTTGGCCTCAAGCCTATCTAGGTTTGACCT
TCAACTGGGGAGCCTTATTAGGATGGGCTGCAGTCAAAGGGAGTTTAGAT
CTGGCTGTTGTGTTCCCAATGTACATTTCTGGAGTTTTTTGGACTCTCGT
GTATGATACAATATATGCACATCAGGATAAAGAAGATGATTTGAAAGTTG
GTGTAAAATCTACTGCTTTGAGATTTGGGGATTCTTCTAAGGAATGGACT
ACTGGGTTCGGAATTGCATGCATAA
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