FC877882

Overview
NameFC877882
Unique NameFC877882
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length925
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig6288 contig Ccv1_Contig6288:136..1060. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC877882 vs. ExPASy Swiss-Prot
Match: UBIA_SHELP (4-hydroxybenzoate octaprenyltransferase OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4) GN=ubiA PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 7.203e-33
Identity = 76/215 (35.35%), Postives = 117/215 (54.42%), Query Frame = 1
Query:  280 AYAKLARLDKPIGTWLLAWPCMWSITMAAPPGHFPDFKMMXXXXXXXXXXXXXXCTVNDLLDRDIDNMVERTRLRPIASGLLTPXXXXXXXXXXXXXXXXXXXXXNNFSRILGASSLLLVFSYPLMKRFTFWPQAYLGLTFNWGALLGWAAVKGSLDLAVVFPMYISGVFWTLVYDTIYAHQDKEDDLKVGVKSTALRFGDSSKEWTTGFGIACI 924
            AY +LAR+D+PIGT+LL WPC+ ++ +AA  G  PD K++              C +ND  DR +D+ VERT+ RP+ASG +T                      N     L    ++L   YP  KRFT  PQ +LG+ ++W   + +AA  G++ +   + ++ +   WT+ YDT+YA  D++DDLKVG+KSTA+ FG   ++    F +A +
Sbjct:    9 AYLRLARMDRPIGTFLLLWPCLMALVLAA--GGMPDLKVLIIFVIGVVVMRACGCIINDYADRKLDSHVERTKSRPLASGEVTVKEALILFVVMGLLAFGLVLMLNPLVVQLSFVGIILTIIYPFTKRFTNMPQMFLGVVWSWSIPMAYAAQLGTVPVEAWW-LFAANWCWTVAYDTMYAMVDRDDDLKVGIKSTAILFGRFDRQIIGLFQLAAL 220          
BLAST of FC877882 vs. ExPASy Swiss-Prot
Match: UBIA_PSEAE (4-hydroxybenzoate octaprenyltransferase OS=Pseudomonas aeruginosa GN=ubiA PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 9.408e-33
Identity = 70/203 (34.48%), Postives = 111/203 (54.68%), Query Frame = 1
Query:  283 YAKLARLDKPIGTWLLAWPCMWSITMAAPPGHFPDFKMMXXXXXXXXXXXXXXCTVNDLLDRDIDNMVERTRLRPIASGLLTPXXXXXXXXXXXXXXXXXXXXXNNFSRILGASSLLLVFSYPLMKRFTFWPQAYLGLTFNWGALLGWAAVKGSLDLAVVFPMYISGVFWTLVYDTIYAHQDKEDDLKVGVKSTALRFGDSSK 891
            + +L RLD+PIG +LL WP +WS+ +AA     P+ K +              C +ND  DR+ D  V RT+ RP+A+G ++                      N  +  L   ++ +   YP MKR+T++PQ  LG  ++WG L+ + A +G L  A  + ++++ V WT+ YD+ YA  D+EDDLK+G+KSTA+ FGD+ +
Sbjct:   19 FVQLVRLDRPIGIYLLLWPTLWSLWIAADG--VPELKNLLIFVLGVILMRAAGCVINDFADRNFDGHVARTKARPLATGKISVREAWITFAVLVALSFGLVLLTNATTVWLSFGAVAVASLYPFMKRYTYYPQVVLGAAYSWGILMAFTAERGELP-ASAWLLFLANVLWTVAYDSYYAMTDREDDLKIGIKSTAILFGDADR 218          
BLAST of FC877882 vs. ExPASy Swiss-Prot
Match: UBIA_PSEAB (4-hydroxybenzoate octaprenyltransferase OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=ubiA PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 9.408e-33
Identity = 70/203 (34.48%), Postives = 111/203 (54.68%), Query Frame = 1
Query:  283 YAKLARLDKPIGTWLLAWPCMWSITMAAPPGHFPDFKMMXXXXXXXXXXXXXXCTVNDLLDRDIDNMVERTRLRPIASGLLTPXXXXXXXXXXXXXXXXXXXXXNNFSRILGASSLLLVFSYPLMKRFTFWPQAYLGLTFNWGALLGWAAVKGSLDLAVVFPMYISGVFWTLVYDTIYAHQDKEDDLKVGVKSTALRFGDSSK 891
            + +L RLD+PIG +LL WP +WS+ +AA     P+ K +              C +ND  DR+ D  V RT+ RP+A+G ++                      N  +  L   ++ +   YP MKR+T++PQ  LG  ++WG L+ + A +G L  A  + ++++ V WT+ YD+ YA  D+EDDLK+G+KSTA+ FGD+ +
Sbjct:   19 FVQLVRLDRPIGIYLLLWPTLWSLWIAADG--VPELKNLLIFVLGVILMRAAGCVINDFADRNFDGHVARTKARPLATGKISVREAWITFAVLVALSFGLVLLTNATTVWLSFGAVAVASLYPFMKRYTYYPQVVLGAAYSWGILMAFTAERGELP-ASAWLLFLANVLWTVAYDSYYAMTDREDDLKIGIKSTAILFGDADR 218          
BLAST of FC877882 vs. ExPASy Swiss-Prot
Match: UBIA_PSEA8 (4-hydroxybenzoate octaprenyltransferase OS=Pseudomonas aeruginosa (strain LESB58) GN=ubiA PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 9.408e-33
Identity = 70/203 (34.48%), Postives = 111/203 (54.68%), Query Frame = 1
Query:  283 YAKLARLDKPIGTWLLAWPCMWSITMAAPPGHFPDFKMMXXXXXXXXXXXXXXCTVNDLLDRDIDNMVERTRLRPIASGLLTPXXXXXXXXXXXXXXXXXXXXXNNFSRILGASSLLLVFSYPLMKRFTFWPQAYLGLTFNWGALLGWAAVKGSLDLAVVFPMYISGVFWTLVYDTIYAHQDKEDDLKVGVKSTALRFGDSSK 891
            + +L RLD+PIG +LL WP +WS+ +AA     P+ K +              C +ND  DR+ D  V RT+ RP+A+G ++                      N  +  L   ++ +   YP MKR+T++PQ  LG  ++WG L+ + A +G L  A  + ++++ V WT+ YD+ YA  D+EDDLK+G+KSTA+ FGD+ +
Sbjct:   19 FVQLVRLDRPIGIYLLLWPTLWSLWIAADG--VPELKNLLIFVLGVILMRAAGCVINDFADRNFDGHVARTKARPLATGKISVREAWITFAVLVALSFGLVLLTNATTVWLSFGAVAVASLYPFMKRYTYYPQVVLGAAYSWGILMAFTAERGELP-ASAWLLFLANVLWTVAYDSYYAMTDREDDLKIGIKSTAILFGDADR 218          
BLAST of FC877882 vs. ExPASy Swiss-Prot
Match: UBIA_NEIMA (4-hydroxybenzoate octaprenyltransferase OS=Neisseria meningitidis serogroup A GN=ubiA PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 1.229e-32
Identity = 76/208 (36.54%), Postives = 109/208 (52.40%), Query Frame = 1
Query:  256 LYLPRQARAYAKLARLDKPIGTWLLAWPCMWSITMAAPPGHFPDFKMMXXXXXXXXXXXXXXCTVNDLLDRDIDNMVERTRLRPIASGLLTPXXXXXXXXXXXXXXXXXXXXXNNFSRILGASSLLLVFSYPLMKRFTFWPQAYLGLTFNWGALLGWAAVKGSLDLAVVFPMYISGVFWTLVYDTIYAHQDKEDDLKVGVKSTALRFG 879
            L L  +   Y +L R DKPIGT LL WP  W++ +A+     PD  ++              C +ND  DRD D  VERT+ RP A G +                       N+ + ++   +L L  +YP  KRF   PQ YLGL F++G  + +AAV G++ L   + ++ + V WTL YDT+YA  DKEDDLK+G+K++A+ FG
Sbjct:    9 LRLSDRLDVYLRLMRADKPIGTLLLLWPTYWALWLASDG--IPDLAVLAAFTIGTFLMRSAGCVINDFADRDFDGAVERTKNRPFAQGRVKKKEALLLTAFLCLLAALCLIPLNHLTWLMSLPALFLALTYPFTKRFFPIPQLYLGLAFSFGIPMAFAAVAGNV-LPQAWILFAANVLWTLAYDTVYAMADKEDDLKIGIKTSAVTFG 213          
BLAST of FC877882 vs. ExPASy Swiss-Prot
Match: UBIA_YERPB (4-hydroxybenzoate octaprenyltransferase OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=ubiA PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.605e-32
Identity = 76/205 (37.07%), Postives = 110/205 (53.66%), Query Frame = 1
Query:  277 RAYAKLARLDKPIGTWLLAWPCMWSITMAAPPGHFPDFKMMXXXXXXXXXXXXXXCTVNDLLDRDIDNMVERTRLRPIASGLLTPXXXXXXXXXXXXXXXXXXXXXNNFSRILGASSLLLVFSYPLMKRFTFWPQAYLGLTFNWGALLGWAAVKGSLDLAVVFPMYISGVFWTLVYDTIYAHQDKEDDLKVGVKSTALRFGDSSK 891
            +AY +L R+DKPIG+ LL WP +W++ +A      P+ K++              C VND  DR ID+ V+RT  RP+ SG ++                      N+ +  L  ++L L + YP MKR T  PQ  LG  F W   +G+AAV  SL L V + + ++ + WT+ YDT YA  D++DDL++GVKSTA+ FG   K
Sbjct:   11 QAYCRLMRIDKPIGSLLLLWPTLWALWLAGRG--IPEAKILVVFVLGVFFMRAAGCVVNDYADRHIDSFVKRTASRPLPSGTISEKESKILFVVLILLSFGLVLTLNSMTIWLSLAALALAWIYPFMKRVTHLPQVVLGAAFGWSIPMGFAAVSESLPL-VCWLLLLANICWTVAYDTQYAMVDRDDDLRIGVKSTAILFGQHDK 212          
BLAST of FC877882 vs. ExPASy Swiss-Prot
Match: UBIA_PSEFS (4-hydroxybenzoate octaprenyltransferase OS=Pseudomonas fluorescens (strain SBW25) GN=ubiA PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.605e-32
Identity = 74/211 (35.07%), Postives = 110/211 (52.13%), Query Frame = 1
Query:  259 YLPRQARAYAKLARLDKPIGTWLLAWPCMWSITMAAPPGHFPDFKMMXXXXXXXXXXXXXXCTVNDLLDRDIDNMVERTRLRPIASGLLTPXXXXXXXXXXXXXXXXXXXXXNNFSRILGASSLLLVFSYPLMKRFTFWPQAYLGLTFNWGALLGWAAVKGSLDLAVVFPMYISGVFWTLVYDTIYAHQDKEDDLKVGVKSTALRFGDSSK 891
            +L  +A  + +L R+DKPIG +LL WP +W++ +A      P    +              C +ND  DR +D  V+RT  RP+ SG ++                      N  + +L    L L  SYP MKR+T++PQ  LG  F+WG  + + A  G L  A  + +YI+ + WT+ YDT YA  D++DDLK+GVKSTA+ FGD+ +
Sbjct:   11 HLNPRAWDFVQLTRMDKPIGIYLLLWPTLWALWIAGKGS--PSLINIVIFVLGVVLTRAGGCVINDWADRKVDGHVKRTEQRPLVSGKISSKEALVFFAVLMGISFLLVLLTNATTILLSLGGLALAASYPFMKRYTYYPQVVLGAAFSWGMPMAFTAETGDLP-ATAWLLYIANLLWTVGYDTYYAMTDRDDDLKIGVKSTAILFGDADR 218          
BLAST of FC877882 vs. ExPASy Swiss-Prot
Match: UBIA_YERPY (4-hydroxybenzoate octaprenyltransferase OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=ubiA PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 2.096e-32
Identity = 76/205 (37.07%), Postives = 109/205 (53.17%), Query Frame = 1
Query:  277 RAYAKLARLDKPIGTWLLAWPCMWSITMAAPPGHFPDFKMMXXXXXXXXXXXXXXCTVNDLLDRDIDNMVERTRLRPIASGLLTPXXXXXXXXXXXXXXXXXXXXXNNFSRILGASSLLLVFSYPLMKRFTFWPQAYLGLTFNWGALLGWAAVKGSLDLAVVFPMYISGVFWTLVYDTIYAHQDKEDDLKVGVKSTALRFGDSSK 891
            +AY +L R+DKPIG+ LL WP +W++ +A      P+ K++              C VND  DR ID  V+RT  RP+ SG ++                      N+ +  L  ++L L + YP MKR T  PQ  LG  F W   +G+AAV  SL L V + + ++ + WT+ YDT YA  D++DDL++GVKSTA+ FG   K
Sbjct:   11 QAYCRLMRIDKPIGSLLLLWPTLWALWLAGRG--IPEAKILVVFVLGVFFMRAAGCVVNDYADRHIDGFVKRTASRPLPSGTISEKESKILFVVLILLSFGLVLTLNSMTIWLSLAALALAWIYPFMKRVTHLPQVVLGAAFGWSIPMGFAAVSESLPL-VCWLLLLANICWTVAYDTQYAMVDRDDDLRIGVKSTAILFGQHDK 212          
BLAST of FC877882 vs. ExPASy Swiss-Prot
Match: UBIA_YERPS (4-hydroxybenzoate octaprenyltransferase OS=Yersinia pseudotuberculosis GN=ubiA PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 2.096e-32
Identity = 76/205 (37.07%), Postives = 109/205 (53.17%), Query Frame = 1
Query:  277 RAYAKLARLDKPIGTWLLAWPCMWSITMAAPPGHFPDFKMMXXXXXXXXXXXXXXCTVNDLLDRDIDNMVERTRLRPIASGLLTPXXXXXXXXXXXXXXXXXXXXXNNFSRILGASSLLLVFSYPLMKRFTFWPQAYLGLTFNWGALLGWAAVKGSLDLAVVFPMYISGVFWTLVYDTIYAHQDKEDDLKVGVKSTALRFGDSSK 891
            +AY +L R+DKPIG+ LL WP +W++ +A      P+ K++              C VND  DR ID  V+RT  RP+ SG ++                      N+ +  L  ++L L + YP MKR T  PQ  LG  F W   +G+AAV  SL L V + + ++ + WT+ YDT YA  D++DDL++GVKSTA+ FG   K
Sbjct:   11 QAYCRLMRIDKPIGSLLLLWPTLWALWLAGRG--IPEAKILVVFVLGVFFMRAAGCVVNDYADRHIDGFVKRTASRPLPSGTISEKESKILFVVLILLSFGLVLTLNSMTIWLSLAALALAWIYPFMKRVTHLPQVVLGAAFGWSIPMGFAAVSESLPL-VCWLLLLANICWTVAYDTQYAMVDRDDDLRIGVKSTAILFGQHDK 212          
BLAST of FC877882 vs. ExPASy Swiss-Prot
Match: UBIA_YERPP (4-hydroxybenzoate octaprenyltransferase OS=Yersinia pestis (strain Pestoides F) GN=ubiA PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 2.096e-32
Identity = 76/205 (37.07%), Postives = 109/205 (53.17%), Query Frame = 1
Query:  277 RAYAKLARLDKPIGTWLLAWPCMWSITMAAPPGHFPDFKMMXXXXXXXXXXXXXXCTVNDLLDRDIDNMVERTRLRPIASGLLTPXXXXXXXXXXXXXXXXXXXXXNNFSRILGASSLLLVFSYPLMKRFTFWPQAYLGLTFNWGALLGWAAVKGSLDLAVVFPMYISGVFWTLVYDTIYAHQDKEDDLKVGVKSTALRFGDSSK 891
            +AY +L R+DKPIG+ LL WP +W++ +A      P+ K++              C VND  DR ID  V+RT  RP+ SG ++                      N+ +  L  ++L L + YP MKR T  PQ  LG  F W   +G+AAV  SL L V + + ++ + WT+ YDT YA  D++DDL++GVKSTA+ FG   K
Sbjct:   11 QAYCRLMRIDKPIGSLLLLWPTLWALWLAGRG--IPEAKILVVFVLGVFFMRAAGCVVNDYADRHIDGFVKRTASRPLPSGTISEKESKILFVVLILLSFGLVLTLNSMTIWLSLAALALAWIYPFMKRVTHLPQVVLGAAFGWSIPMGFAAVSESLPL-VCWLLLLANICWTVAYDTQYAMVDRDDDLRIGVKSTAILFGQHDK 212          
The following BLAST results are available for this feature:
BLAST of FC877882 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 235
Match NameE-valueIdentityDescription
UBIA_SHELP7.203e-3335.354-hydroxybenzoate octaprenyltransferase OS=Shewane... [more]
UBIA_PSEAE9.408e-3334.484-hydroxybenzoate octaprenyltransferase OS=Pseudom... [more]
UBIA_PSEAB9.408e-3334.484-hydroxybenzoate octaprenyltransferase OS=Pseudom... [more]
UBIA_PSEA89.408e-3334.484-hydroxybenzoate octaprenyltransferase OS=Pseudom... [more]
UBIA_NEIMA1.229e-3236.544-hydroxybenzoate octaprenyltransferase OS=Neisser... [more]
UBIA_YERPB1.605e-3237.074-hydroxybenzoate octaprenyltransferase OS=Yersini... [more]
UBIA_PSEFS1.605e-3235.074-hydroxybenzoate octaprenyltransferase OS=Pseudom... [more]
UBIA_YERPY2.096e-3237.074-hydroxybenzoate octaprenyltransferase OS=Yersini... [more]
UBIA_YERPS2.096e-3237.074-hydroxybenzoate octaprenyltransferase OS=Yersini... [more]
UBIA_YERPP2.096e-3237.074-hydroxybenzoate octaprenyltransferase OS=Yersini... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA15CA07RM1 IVIA1 Citrus clementina cDNA clone IC0AAA15CA07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877882 ID=FC877882; Name=FC877882; organism=Citrus clementina; type=EST; length=925bp
CGCGTTTTCCGGAGGAGCAGATACCTAAAACCATCGTTGTCTCTTCTCCT
CAGCGGCAACAACAATCCATCTAATCCAGTCCTAAACCCTAAACTTAGCC
CTCATGTAGCCAAATTGACGAATCATTACCGTTGGATGCCAAATTCTGAA
CAAAATTTCAGATACGCATGGGTAGCAAGCATCTGTACAACACCGTCGCA
GTCAAGTGTTGAGAAAGAGACTAGTAGTAGTAATGAGAAATCATCGTGGA
TTGACTTGTATTTGCCGAGACAAGCGAGGGCTTATGCGAAGCTGGCTCGG
CTTGATAAGCCGATCGGGACGTGGCTGCTGGCTTGGCCTTGTATGTGGTC
AATTACAATGGCGGCGCCACCTGGACACTTTCCGGATTTCAAAATGATGG
CGCTCTTTGGCTGTGGCGCTCTCCTTCTACGCGGGGCCGGGTGTACCGTT
AATGACCTCCTTGATAGGGATATTGATAATATGGTGGAACGCACAAGGTT
AAGGCCCATTGCGAGTGGTCTTCTAACACCGTTTCAAGGACTTTCTTTTC
TTGGGTTTCAATTGCTTTTAGGTCTTGGGATTCTTCTCCAGTTGAATAAT
TTTAGCCGCATTCTGGGGGCTTCATCTTTGCTGTTAGTCTTCTCCTACCC
CCTCATGAAGAGGTTTACTTTTTGGCCTCAAGCCTATCTAGGTTTGACCT
TCAACTGGGGAGCCTTATTAGGATGGGCTGCAGTCAAAGGGAGTTTAGAT
CTGGCTGTTGTGTTCCCAATGTACATTTCTGGAGTTTTTTGGACTCTCGT
GTATGATACAATATATGCACATCAGGATAAAGAAGATGATTTGAAAGTTG
GTGTAAAATCTACTGCTTTGAGATTTGGGGATTCTTCTAAGGAATGGACT
ACTGGGTTCGGAATTGCATGCATAA
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