FC877882

Overview
NameFC877882
Unique NameFC877882
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length925
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig6288 contig Ccv1_Contig6288:136..1060. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC877882 vs. ExPASy Swiss-Prot
Match: UBIA_YERPN (4-hydroxybenzoate octaprenyltransferase OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=ubiA PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 2.096e-32
Identity = 76/205 (37.07%), Postives = 109/205 (53.17%), Query Frame = 1
Query:  277 RAYAKLARLDKPIGTWLLAWPCMWSITMAAPPGHFPDFKMMXXXXXXXXXXXXXXCTVNDLLDRDIDNMVERTRLRPIASGLLTPXXXXXXXXXXXXXXXXXXXXXNNFSRILGASSLLLVFSYPLMKRFTFWPQAYLGLTFNWGALLGWAAVKGSLDLAVVFPMYISGVFWTLVYDTIYAHQDKEDDLKVGVKSTALRFGDSSK 891
            +AY +L R+DKPIG+ LL WP +W++ +A      P+ K++              C VND  DR ID  V+RT  RP+ SG ++                      N+ +  L  ++L L + YP MKR T  PQ  LG  F W   +G+AAV  SL L V + + ++ + WT+ YDT YA  D++DDL++GVKSTA+ FG   K
Sbjct:   11 QAYCRLMRIDKPIGSLLLLWPTLWALWLAGRG--IPEAKILVVFVLGVFFMRAAGCVVNDYADRHIDGFVKRTASRPLPSGTISEKESKILFVVLILLSFGLVLTLNSMTIWLSLAALALAWIYPFMKRVTHLPQVVLGAAFGWSIPMGFAAVSESLPL-VCWLLLLANICWTVAYDTQYAMVDRDDDLRIGVKSTAILFGQHDK 212          
BLAST of FC877882 vs. ExPASy Swiss-Prot
Match: UBIA_YERPG (4-hydroxybenzoate octaprenyltransferase OS=Yersinia pestis bv. Antiqua (strain Angola) GN=ubiA PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 2.096e-32
Identity = 76/205 (37.07%), Postives = 109/205 (53.17%), Query Frame = 1
Query:  277 RAYAKLARLDKPIGTWLLAWPCMWSITMAAPPGHFPDFKMMXXXXXXXXXXXXXXCTVNDLLDRDIDNMVERTRLRPIASGLLTPXXXXXXXXXXXXXXXXXXXXXNNFSRILGASSLLLVFSYPLMKRFTFWPQAYLGLTFNWGALLGWAAVKGSLDLAVVFPMYISGVFWTLVYDTIYAHQDKEDDLKVGVKSTALRFGDSSK 891
            +AY +L R+DKPIG+ LL WP +W++ +A      P+ K++              C VND  DR ID  V+RT  RP+ SG ++                      N+ +  L  ++L L + YP MKR T  PQ  LG  F W   +G+AAV  SL L V + + ++ + WT+ YDT YA  D++DDL++GVKSTA+ FG   K
Sbjct:   11 QAYCRLMRIDKPIGSLLLLWPTLWALWLAGRG--IPEAKILVVFVLGVFFMRAAGCVVNDYADRHIDGFVKRTASRPLPSGTISEKESKILFVVLILLSFGLVLTLNSMTIWLSLAALALAWIYPFMKRVTHLPQVVLGAAFGWSIPMGFAAVSESLPL-VCWLLLLANICWTVAYDTQYAMVDRDDDLRIGVKSTAILFGQHDK 212          
BLAST of FC877882 vs. ExPASy Swiss-Prot
Match: UBIA_YERPE (4-hydroxybenzoate octaprenyltransferase OS=Yersinia pestis GN=ubiA PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 2.096e-32
Identity = 76/205 (37.07%), Postives = 109/205 (53.17%), Query Frame = 1
Query:  277 RAYAKLARLDKPIGTWLLAWPCMWSITMAAPPGHFPDFKMMXXXXXXXXXXXXXXCTVNDLLDRDIDNMVERTRLRPIASGLLTPXXXXXXXXXXXXXXXXXXXXXNNFSRILGASSLLLVFSYPLMKRFTFWPQAYLGLTFNWGALLGWAAVKGSLDLAVVFPMYISGVFWTLVYDTIYAHQDKEDDLKVGVKSTALRFGDSSK 891
            +AY +L R+DKPIG+ LL WP +W++ +A      P+ K++              C VND  DR ID  V+RT  RP+ SG ++                      N+ +  L  ++L L + YP MKR T  PQ  LG  F W   +G+AAV  SL L V + + ++ + WT+ YDT YA  D++DDL++GVKSTA+ FG   K
Sbjct:   11 QAYCRLMRIDKPIGSLLLLWPTLWALWLAGRG--IPEAKILVVFVLGVFFMRAAGCVVNDYADRHIDGFVKRTASRPLPSGTISEKESKILFVVLILLSFGLVLTLNSMTIWLSLAALALAWIYPFMKRVTHLPQVVLGAAFGWSIPMGFAAVSESLPL-VCWLLLLANICWTVAYDTQYAMVDRDDDLRIGVKSTAILFGQHDK 212          
BLAST of FC877882 vs. ExPASy Swiss-Prot
Match: UBIA_YERPA (4-hydroxybenzoate octaprenyltransferase OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=ubiA PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 2.096e-32
Identity = 76/205 (37.07%), Postives = 109/205 (53.17%), Query Frame = 1
Query:  277 RAYAKLARLDKPIGTWLLAWPCMWSITMAAPPGHFPDFKMMXXXXXXXXXXXXXXCTVNDLLDRDIDNMVERTRLRPIASGLLTPXXXXXXXXXXXXXXXXXXXXXNNFSRILGASSLLLVFSYPLMKRFTFWPQAYLGLTFNWGALLGWAAVKGSLDLAVVFPMYISGVFWTLVYDTIYAHQDKEDDLKVGVKSTALRFGDSSK 891
            +AY +L R+DKPIG+ LL WP +W++ +A      P+ K++              C VND  DR ID  V+RT  RP+ SG ++                      N+ +  L  ++L L + YP MKR T  PQ  LG  F W   +G+AAV  SL L V + + ++ + WT+ YDT YA  D++DDL++GVKSTA+ FG   K
Sbjct:   11 QAYCRLMRIDKPIGSLLLLWPTLWALWLAGRG--IPEAKILVVFVLGVFFMRAAGCVVNDYADRHIDGFVKRTASRPLPSGTISEKESKILFVVLILLSFGLVLTLNSMTIWLSLAALALAWIYPFMKRVTHLPQVVLGAAFGWSIPMGFAAVSESLPL-VCWLLLLANICWTVAYDTQYAMVDRDDDLRIGVKSTAILFGQHDK 212          
BLAST of FC877882 vs. ExPASy Swiss-Prot
Match: UBIA_YERP3 (4-hydroxybenzoate octaprenyltransferase OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=ubiA PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 2.096e-32
Identity = 76/205 (37.07%), Postives = 109/205 (53.17%), Query Frame = 1
Query:  277 RAYAKLARLDKPIGTWLLAWPCMWSITMAAPPGHFPDFKMMXXXXXXXXXXXXXXCTVNDLLDRDIDNMVERTRLRPIASGLLTPXXXXXXXXXXXXXXXXXXXXXNNFSRILGASSLLLVFSYPLMKRFTFWPQAYLGLTFNWGALLGWAAVKGSLDLAVVFPMYISGVFWTLVYDTIYAHQDKEDDLKVGVKSTALRFGDSSK 891
            +AY +L R+DKPIG+ LL WP +W++ +A      P+ K++              C VND  DR ID  V+RT  RP+ SG ++                      N+ +  L  ++L L + YP MKR T  PQ  LG  F W   +G+AAV  SL L V + + ++ + WT+ YDT YA  D++DDL++GVKSTA+ FG   K
Sbjct:   11 QAYCRLMRIDKPIGSLLLLWPTLWALWLAGRG--IPEAKILVVFVLGVFFMRAAGCVVNDYADRHIDGFVKRTASRPLPSGTISEKESKILFVVLILLSFGLVLTLNSMTIWLSLAALALAWIYPFMKRVTHLPQVVLGAAFGWSIPMGFAAVSESLPL-VCWLLLLANICWTVAYDTQYAMVDRDDDLRIGVKSTAILFGQHDK 212          
BLAST of FC877882 vs. ExPASy Swiss-Prot
Match: UBIA_METFK (4-hydroxybenzoate octaprenyltransferase OS=Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 6875) GN=ubiA PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 2.096e-32
Identity = 78/206 (37.86%), Postives = 109/206 (52.91%), Query Frame = 1
Query:  262 LPRQARAYAKLARLDKPIGTWLLAWPCMWSITMAAPPGHFPDFKMMXXXXXXXXXXXXXXCTVNDLLDRDIDNMVERTRLRPIASGLLTPXXXXXXXXXXXXXXXXXXXXXNNFSRILGASSLLLVFSYPLMKRFTFWPQAYLGLTFNWGALLGWAAVKGSLDLAVVFPMYISGVFWTLVYDTIYAHQDKEDDLKVGVKSTALRFG 879
            L ++  AY +L RLDKPIG  LL WP +W I +A+P   +PD  ++              C +NDL DR+ D  VERTR RP+ +G +T                      N     L   +L L  SYPL KRF   PQAYLG+ F +G  + +AA+ G L L   + + ++ VFW + YDT YA  D+ DDL +G++S+A+ FG
Sbjct:    6 LRQKLEAYYRLTRLDKPIGILLLLWPTLWGIWLASPG--WPDGLVLFVFIAGTVLMRSAGCVMNDLADRNFDGHVERTRQRPLVTGDVTTKEAVLLALALSLVAFILVLQLNPLVVALSFPALFLAASYPLTKRFLSIPQAYLGIAFGFGIPMAFAAITGQLPLE-AWILLLANVFWAIAYDTEYAMVDRNDDLNIGIRSSAIFFG 208          
BLAST of FC877882 vs. ExPASy Swiss-Prot
Match: UBIA_XYLFA (4-hydroxybenzoate octaprenyltransferase OS=Xylella fastidiosa GN=ubiA PE=3 SV=2)

HSP 1 Score: 139.043 bits (349), Expect = 3.575e-32
Identity = 71/200 (35.50%), Postives = 106/200 (53.00%), Query Frame = 1
Query:  283 YAKLARLDKPIGTWLLAWPCMWSITMAAPPGHFPDFKMMXXXXXXXXXXXXXXCTVNDLLDRDIDNMVERTRLRPIASGLLTPXXXXXXXXXXXXXXXXXXXXXNNFSRILGASSLLLVFSYPLMKRFTFWPQAYLGLTFNWGALLGWAAVKGSLDLAVVFPMYISGVFWTLVYDTIYAHQDKEDDLKVGVKSTALRFGD 882
            Y KLAR D+P+G  LL WP  W++ +AA  G  P +  +              C +ND  DR +D  VERTR+RP+ +G ++P                     N  + +L    L L  +YP +KR+T+ PQ YLGL F WG  + +AA++G +     + +Y++ + WT  YDT  A  D++DD+K+G KSTA+ F D
Sbjct:   23 YWKLARGDRPVGFLLLLWPTWWALWLAA--GGVPPWWTLCVFTTGIWLTRSAGCVINDYTDRWLDPHVERTRIRPLVTGAVSPRNALLMFATLMLIAFGLVLTMNQLTVLLSVVGLFLAMTYPYLKRYTYLPQVYLGLAFGWGIPMAFAAIQGKVP-TQAWLLYVANILWTTAYDTWCAMVDRDDDIKMGAKSTAILFAD 219          
BLAST of FC877882 vs. ExPASy Swiss-Prot
Match: UBIA_SHEWM (4-hydroxybenzoate octaprenyltransferase OS=Shewanella woodyi (strain ATCC 51908 / MS32) GN=ubiA PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 3.575e-32
Identity = 75/214 (35.05%), Postives = 115/214 (53.74%), Query Frame = 1
Query:  283 YAKLARLDKPIGTWLLAWPCMWSITMAAPPGHFPDFKMMXXXXXXXXXXXXXXCTVNDLLDRDIDNMVERTRLRPIASGLLTPXXXXXXXXXXXXXXXXXXXXXNNFSRILGASSLLLVFSYPLMKRFTFWPQAYLGLTFNWGALLGWAAVKGSLDLAVVFPMYISGVFWTLVYDTIYAHQDKEDDLKVGVKSTALRFGDSSKEWTTGFGIACI 924
            Y +LAR+D+PIGT LL WPC+ ++ +AA  G  PD K++              C +ND  DR +D+ VERT+ RP+ASG ++                      N     L    ++L   YP  KRFT  PQ +LG+ ++W   + +AA  G++  A  + ++ +   WT+ YDT+YA  D++DDLKVG+KSTA+ FG   ++    F +A +
Sbjct:   10 YLRLARMDRPIGTLLLMWPCLMALVLAA--GGMPDLKVLVIFIIGVVVMRACGCIINDYADRKLDSHVERTKSRPLASGEVSVKEALTLFVVMGLIAFGLVLMLNPLVVQLSFVGIILTIIYPFTKRFTNMPQMFLGVVWSWSIPMAYAAQTGTVP-AEAWWLFAANWCWTVAYDTMYAMVDRDDDLKVGIKSTAILFGKYDRQVIALFQLAAL 220          
BLAST of FC877882 vs. ExPASy Swiss-Prot
Match: UBIA_ALCBS (4-hydroxybenzoate octaprenyltransferase OS=Alcanivorax borkumensis (strain SK2 / ATCC 700651 / DSM 11573) GN=ubiA PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 3.575e-32
Identity = 74/203 (36.45%), Postives = 106/203 (52.22%), Query Frame = 1
Query:  283 YAKLARLDKPIGTWLLAWPCMWSITMAAPPGHFPDFKMMXXXXXXXXXXXXXXCTVNDLLDRDIDNMVERTRLRPIASGLLTPXXXXXXXXXXXXXXXXXXXXXNNFSRILGASSLLLVFSYPLMKRFTFWPQAYLGLTFNWGALLGWAAVKGSLDLAVVFPMYISGVFWTLVYDTIYAHQDKEDDLKVGVKSTALRFGDSSK 891
            Y +L RLD+PIGT LL WP +W++ +A      P   ++              C +ND  DR+ D  VERT+ RP+A+G L+                      N  +  L    L L   YP  KRFTF PQ +LG  F+W   + +AA  G +   + + +Y++ V WT+ YDT YA  D+EDDLK+G+KSTA+ FGD+ +
Sbjct:   15 YIQLMRLDRPIGTLLLLWPTLWAVWIAG--AGTPSLTVIVVFFLGVVIMRAAGCVINDFADRNFDGDVERTQGRPLATGALSAKQALALFGGLGLLAFGLVLFLNELTFWLSFGGLGLAVLYPFTKRFTFMPQLFLGAAFSWAIPMAFAAETGEVP-EIAWLLYVANVLWTVAYDTEYAMCDREDDLKLGIKSTAILFGDADR 214          
BLAST of FC877882 vs. ExPASy Swiss-Prot
Match: UBIA_PSEPF (4-hydroxybenzoate octaprenyltransferase OS=Pseudomonas fluorescens (strain Pf0-1) GN=ubiA PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 4.669e-32
Identity = 72/203 (35.47%), Postives = 107/203 (52.71%), Query Frame = 1
Query:  283 YAKLARLDKPIGTWLLAWPCMWSITMAAPPGHFPDFKMMXXXXXXXXXXXXXXCTVNDLLDRDIDNMVERTRLRPIASGLLTPXXXXXXXXXXXXXXXXXXXXXNNFSRILGASSLLLVFSYPLMKRFTFWPQAYLGLTFNWGALLGWAAVKGSLDLAVVFPMYISGVFWTLVYDTIYAHQDKEDDLKVGVKSTALRFGDSSK 891
            + +L R+DKPIG +LL WP +W++ +A      P    +              C +ND  DR +D  V+RT  RPIA+G ++                      N  +  L    L L F+YP MKR+T++PQ  LG  F+WG  + + A  G L  A  + ++I+ + WT+ YDT YA  D++DDLK+GVKSTA+ FGD+ +
Sbjct:   19 FIQLTRMDKPIGIYLLLWPTLWALWIAGKGS--PSLANIVIFVLGVVLTRAGGCVINDWADRKVDGHVKRTAQRPIAAGKISSKEALVFFALLMGVSFLLVLCTNAATIWLSLGGLALAFTYPFMKRYTYYPQVVLGAAFSWGMPMAFTAETGELP-ATAWLLWIANLLWTVGYDTYYAMTDRDDDLKIGVKSTAILFGDADR 218          
The following BLAST results are available for this feature:
BLAST of FC877882 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 235
Match NameE-valueIdentityDescription
UBIA_YERPN2.096e-3237.074-hydroxybenzoate octaprenyltransferase OS=Yersini... [more]
UBIA_YERPG2.096e-3237.074-hydroxybenzoate octaprenyltransferase OS=Yersini... [more]
UBIA_YERPE2.096e-3237.074-hydroxybenzoate octaprenyltransferase OS=Yersini... [more]
UBIA_YERPA2.096e-3237.074-hydroxybenzoate octaprenyltransferase OS=Yersini... [more]
UBIA_YERP32.096e-3237.074-hydroxybenzoate octaprenyltransferase OS=Yersini... [more]
UBIA_METFK2.096e-3237.864-hydroxybenzoate octaprenyltransferase OS=Methylo... [more]
UBIA_XYLFA3.575e-3235.504-hydroxybenzoate octaprenyltransferase OS=Xylella... [more]
UBIA_SHEWM3.575e-3235.054-hydroxybenzoate octaprenyltransferase OS=Shewane... [more]
UBIA_ALCBS3.575e-3236.454-hydroxybenzoate octaprenyltransferase OS=Alcaniv... [more]
UBIA_PSEPF4.669e-3235.474-hydroxybenzoate octaprenyltransferase OS=Pseudom... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA15CA07RM1 IVIA1 Citrus clementina cDNA clone IC0AAA15CA07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877882 ID=FC877882; Name=FC877882; organism=Citrus clementina; type=EST; length=925bp
CGCGTTTTCCGGAGGAGCAGATACCTAAAACCATCGTTGTCTCTTCTCCT
CAGCGGCAACAACAATCCATCTAATCCAGTCCTAAACCCTAAACTTAGCC
CTCATGTAGCCAAATTGACGAATCATTACCGTTGGATGCCAAATTCTGAA
CAAAATTTCAGATACGCATGGGTAGCAAGCATCTGTACAACACCGTCGCA
GTCAAGTGTTGAGAAAGAGACTAGTAGTAGTAATGAGAAATCATCGTGGA
TTGACTTGTATTTGCCGAGACAAGCGAGGGCTTATGCGAAGCTGGCTCGG
CTTGATAAGCCGATCGGGACGTGGCTGCTGGCTTGGCCTTGTATGTGGTC
AATTACAATGGCGGCGCCACCTGGACACTTTCCGGATTTCAAAATGATGG
CGCTCTTTGGCTGTGGCGCTCTCCTTCTACGCGGGGCCGGGTGTACCGTT
AATGACCTCCTTGATAGGGATATTGATAATATGGTGGAACGCACAAGGTT
AAGGCCCATTGCGAGTGGTCTTCTAACACCGTTTCAAGGACTTTCTTTTC
TTGGGTTTCAATTGCTTTTAGGTCTTGGGATTCTTCTCCAGTTGAATAAT
TTTAGCCGCATTCTGGGGGCTTCATCTTTGCTGTTAGTCTTCTCCTACCC
CCTCATGAAGAGGTTTACTTTTTGGCCTCAAGCCTATCTAGGTTTGACCT
TCAACTGGGGAGCCTTATTAGGATGGGCTGCAGTCAAAGGGAGTTTAGAT
CTGGCTGTTGTGTTCCCAATGTACATTTCTGGAGTTTTTTGGACTCTCGT
GTATGATACAATATATGCACATCAGGATAAAGAAGATGATTTGAAAGTTG
GTGTAAAATCTACTGCTTTGAGATTTGGGGATTCTTCTAAGGAATGGACT
ACTGGGTTCGGAATTGCATGCATAA
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