FC877884

Overview
NameFC877884
Unique NameFC877884
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length858
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC877884_ssr202 microsatellite FC877884_ssr202:202..211. BLAST: Citrus ESTs to Prunus persica proteins V1
FC877884_ssr36 microsatellite FC877884_ssr36:36..47. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig11621 contig Ccv1_Contig11621:17..874. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC877884 vs. ExPASy Swiss-Prot
Match: SSH2_MOUSE (Protein phosphatase Slingshot homolog 2 OS=Mus musculus GN=Ssh2 PE=1 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 4.636e-15
Identity = 51/172 (29.65%), Postives = 83/172 (48.26%), Query Frame = 1
Query:  259 VCGICGHRSASSAEKTTTLQVSAFPSEILPDFLYLGSYDNASRSGLLKTQGISRVLNTVPSCQNLYKNSFTYHCLE------DDKILQFDDAIQFLEQCERDKACVLVHCMFGKNRSAAIVIAYLMKCKGWRLAQSHQWVKERRPSVNLTEDVHQQLQEYEQKIFGSVDGSN 756
            VC +   +     E    L     P++I  + ++LGS  NAS    L+ +G+  +LN      N +   F YH +        D +  ++D  +F+ + ++  +  LVHC  G +RSA+ VIAY MK  GW L +++ +VKERR          +QL+EY+  +  S    N
Sbjct:  284 VCNLREFKEFIDNEMIVILGQMDSPTQIF-EHVFLGSEWNASNLEDLQNRGVRYILNVTREIDNFFPGVFEYHNIRVYDEEATDLLAYWNDTYKFISKAKKHGSKCLVHCKMGVSRSASTVIAYAMKEYGWNLDRAYDYVKERRTVTKPNPSFMRQLEEYQGILLASKQRHN 454          
BLAST of FC877884 vs. ExPASy Swiss-Prot
Match: SSH2_HUMAN (Protein phosphatase Slingshot homolog 2 OS=Homo sapiens GN=SSH2 PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 4.636e-15
Identity = 51/172 (29.65%), Postives = 83/172 (48.26%), Query Frame = 1
Query:  259 VCGICGHRSASSAEKTTTLQVSAFPSEILPDFLYLGSYDNASRSGLLKTQGISRVLNTVPSCQNLYKNSFTYHCLE------DDKILQFDDAIQFLEQCERDKACVLVHCMFGKNRSAAIVIAYLMKCKGWRLAQSHQWVKERRPSVNLTEDVHQQLQEYEQKIFGSVDGSN 756
            VC +   +     E    L     P++I  + ++LGS  NAS    L+ +G+  +LN      N +   F YH +        D +  ++D  +F+ + ++  +  LVHC  G +RSA+ VIAY MK  GW L +++ +VKERR          +QL+EY+  +  S    N
Sbjct:  284 VCNLREFKEFIDNEMIVILGQMDSPTQIF-EHVFLGSEWNASNLEDLQNRGVRYILNVTREIDNFFPGVFEYHNIRVYDEEATDLLAYWNDTYKFISKAKKHGSKCLVHCKMGVSRSASTVIAYAMKEYGWNLDRAYDYVKERRTVTKPNPSFMRQLEEYQGILLASKQRHN 454          
BLAST of FC877884 vs. ExPASy Swiss-Prot
Match: DUS1_HUMAN (Dual specificity protein phosphatase 1 OS=Homo sapiens GN=DUSP1 PE=1 SV=3)

HSP 1 Score: 82.0333 bits (201), Expect = 4.636e-15
Identity = 56/179 (31.28%), Postives = 90/179 (50.28%), Query Frame = 1
Query:  304 TTTLQVSAFPSEILPDFLYLGSYDNASRSGLLKTQGISRVLNTVPSCQNLYKNSFTYHCL--ED----DKILQFDDAIQFLEQCERDKACVLVHCMFGKNRSAAIVIAYLMKCKGWRLAQSHQWVKERRPSVNLTEDVHQQLQEYEQKIFG---SVDGSNPTPLPALSAXMPSFSFGFP 813
            +T L     P EILP FLYLGS  +ASR  +L   GI+ ++N   +C N ++  + Y  +  ED    D    F++AI F++  +     V VHC  G +RSA I +AYLM+    +L ++ ++VK+RR  ++       QL ++E ++     S +  +P           +  F FP
Sbjct:  165 STPLYDQGGPVEILP-FLYLGSAYHASRKDMLDALGITALINVSANCPNHFEGHYQYKSIPVEDNHKADISSWFNEAIDFIDSIKNAGGRVFVHCQAGISRSATICLAYLMRTNRVKLDEAFEFVKQRRSIISPNFSFMGQLLQFESQVLAPHCSAEAGSPAMAVLDRGTSTTTVFNFP 342          
BLAST of FC877884 vs. ExPASy Swiss-Prot
Match: DUSPR_DICDI (Probable rhodanese domain-containing dual specificity protein phosphatase OS=Dictyostelium discoideum GN=DDB_G0273199 PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.033e-14
Identity = 47/161 (29.19%), Postives = 81/161 (50.31%), Query Frame = 1
Query:  268 ICGHRSASSAEKTTTLQVSAFPSEILPDFLYLGSYDNASRSGLLKTQGISRVLNTVPSCQNLYKNSFTYHCLE-DDK-----ILQFDDAIQFLEQCERDKACVLVHCMFGKNRSAAIVIAYLMKCKGWRLAQSHQWVKERRPSVNLTEDVHQQLQEYEQKI 732
            +C   S+ S+          +PSEI+ DFLYLG  +NA     L    I+ ++N      ++Y + + Y+    DD+        F+  IQF+  C++    VL+HC  G +RS  +V+AYLMK      + +  + K++R  +N      +QL++Y+Q +
Sbjct:  188 MCNPSSSPSSSSGGGGGSQLYPSEIIKDFLYLGGAENAGNRQQLINLKITHLVNMAGELDDVYPHLYKYYRANLDDRPKANIYEHFEPVIQFINDCKKQGGRVLIHCAMGISRSTTVVLAYLMKEDHMTYSDAFTFCKQKRSCINPNFGFVKQLKDYQQHL 348          
BLAST of FC877884 vs. ExPASy Swiss-Prot
Match: DUS8_MOUSE (Dual specificity protein phosphatase 8 OS=Mus musculus GN=Dusp8 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.761e-14
Identity = 63/194 (32.47%), Postives = 101/194 (52.06%), Query Frame = 1
Query:  265 GICGHRSASSAEKTTTLQVSAFPS----EILPDFLYLGSYDNASRSGLLKTQGISRVLNTVPSCQN---LYKNSFTYHCLED---DKILQF-DDAIQFLEQCERDKACVLVHCMFGKNRSAAIVIAYLMKCKGWRLAQSHQWVKERRPSVNLTEDVHQQLQEYEQ--KIFGSV--DG---SNPTPLPALSAXMP 792
            G+C  + A+    + +      PS     ILP  LYLGS  +     L+   GIS VLN   SC     + ++ F    + D   +K+L + D +I+F+++ +     V+VHC+ G +RSA I IAY+MK  G     ++++VK+RRPS++   +   QL EYE+  K+  ++  DG     P PL   +A +P
Sbjct:  135 GLCEGKPATLPSMSLSQPCLPVPSVGLTRILPH-LYLGSQKDVLNKDLMTQNGISYVLNASNSCPKPDFICESRFMRIPINDNYCEKLLPWLDKSIEFIDKAKLSSCQVIVHCLAGISRSATIAIAYIMKTMGMSSDDAYRFVKDRRPSISPNFNFLGQLLEYERSLKLLAALQTDGPHLGTPEPLMGPAAGIP 327          
BLAST of FC877884 vs. ExPASy Swiss-Prot
Match: DUS2_HUMAN (Dual specificity protein phosphatase 2 OS=Homo sapiens GN=DUSP2 PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.301e-14
Identity = 50/140 (35.71%), Postives = 82/140 (58.57%), Query Frame = 1
Query:  331 PSEILPDFLYLGSYDNASRSGLLKTQGISRVLNTVPSCQNLYKNSFTYHCL--EDDKILQ----FDDAIQFLEQCERDKACVLVHCMFGKNRSAAIVIAYLMKCKGWRLAQSHQWVKERRPSVNLTEDVHQQLQEYEQKI 732
            P EILP +L+LGS  ++S    L+  GI+ VLN   SC N ++  F Y  +  ED+++++    F +AI F++  +     VLVHC  G +RSA I +AYLM+ +  RL ++  +VK+RR  ++       QL ++E ++
Sbjct:  173 PVEILP-YLFLGSCSHSSDLQGLQACGITAVLNVSASCPNHFEGLFRYKSIPVEDNQMVEISAWFQEAIGFIDWVKNSGGRVLVHCQAGISRSATICLAYLMQSRRVRLDEAFDFVKQRRGVISPNFSFMGQLLQFETQV 311          
BLAST of FC877884 vs. ExPASy Swiss-Prot
Match: SSH_DROME (Protein phosphatase Slingshot OS=Drosophila melanogaster GN=ssh PE=1 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 3.005e-14
Identity = 48/154 (31.17%), Postives = 80/154 (51.95%), Query Frame = 1
Query:  277 HRSASSAEKTTTLQVSAFPSEILPDFLYLGSYDNASRSGLLKTQGISRVLNTVPSCQNLYKNSFTY---HCLEDDK---ILQFDDAIQFLEQCERDKACVLVHCMFGKNRSAAIVIAYLMKCKGWRLAQSHQWVKERRPSVNLTEDVHQQLQEY 720
            ++S   AE    L     P++I  + +YLGS  NAS    L+  G+  +LN      N +  +F Y      +D+K   +  +DD  +++ + + + + VLVHC  G +RSA++VIAY MK   W   Q+ + VK+RR  +   ++   QL+ Y
Sbjct:  366 YKSFIDAEMLVILGQMDAPTKIF-EHVYLGSEWNASNLEELQKNGVRHILNVTREIDNFFPGTFEYFNVRVYDDEKTNLLKYWDDTFRYITRAKAEGSKVLVHCKMGVSRSASVVIAYAMKAYQWEFQQALEHVKKRRSCIKPNKNFLNQLETY 518          
BLAST of FC877884 vs. ExPASy Swiss-Prot
Match: SSH_XENLA (Protein phosphatase Slingshot homolog OS=Xenopus laevis GN=ssh PE=1 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 3.924e-14
Identity = 64/199 (32.16%), Postives = 91/199 (45.73%), Query Frame = 1
Query:  247 EEGEVCGICGHRSASSAEKTTTLQVSAFPSEILPDFLYLGSYDNASRSGLLKTQGISRVLNTVPSCQNLYKNSFTYHCL-----EDDKILQF-DDAIQFLEQCERDKACVLVHCMFGKNRSAAIVIAYLMKCKGWRLAQSHQWVKERRPSVNLTEDVHQQLQEYEQKIFGSV--------DGSNPTPLPALSAXMPSFS 801
            E+  +C +  ++     E    L     PSEI P +LYLGS  NAS    L+   +S +LN      N +   F Y  +     E+  ++Q+  +   F+       + VLVHC  G +RSA+ VIAY MK   W L  + + VKERR  V       +QLQ Y Q I G+         D S+   LP +S    +FS
Sbjct:  268 EQHTLCALQDYKEFIDNEMIIILAQMDRPSEIFP-YLYLGSEWNASNLEELQKNKVSHILNVTREIDNFFPELFMYLNIRVLDEENTNLMQYWKETHAFITTARHQGSRVLVHCKMGVSRSASTVIAYAMKEYEWTLETAIRHVKERRSIVQPNAGFMRQLQTY-QGILGASKQRHSYLWDPSSAPSLPLMSPPPKNFS 464          
BLAST of FC877884 vs. ExPASy Swiss-Prot
Match: DUS2_MOUSE (Dual specificity protein phosphatase 2 OS=Mus musculus GN=Dusp2 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 5.125e-14
Identity = 50/140 (35.71%), Postives = 81/140 (57.86%), Query Frame = 1
Query:  331 PSEILPDFLYLGSYDNASRSGLLKTQGISRVLNTVPSCQNLYKNSFTYHCL--EDDKILQ----FDDAIQFLEQCERDKACVLVHCMFGKNRSAAIVIAYLMKCKGWRLAQSHQWVKERRPSVNLTEDVHQQLQEYEQKI 732
            P EILP +LYLGS +++S    L+  GI+ VLN   SC N ++  F Y  +  ED+++++    F +AI F++  +     VLVHC  G +RSA I +AYL++    RL ++  +VK+RR  ++       QL + E ++
Sbjct:  177 PVEILP-YLYLGSCNHSSDLQGLQACGITAVLNVSASCPNHFEGLFHYKSIPVEDNQMVEISAWFQEAISFIDSVKNSGGRVLVHCQAGISRSATICLAYLIQSHRVRLDEAFDFVKQRRGVISPNFSFMGQLLQLETQV 315          
BLAST of FC877884 vs. ExPASy Swiss-Prot
Match: DUS1_RAT (Dual specificity protein phosphatase 1 OS=Rattus norvegicus GN=Dusp1 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 5.125e-14
Identity = 55/179 (30.73%), Postives = 89/179 (49.72%), Query Frame = 1
Query:  304 TTTLQVSAFPSEILPDFLYLGSYDNASRSGLLKTQGISRVLNTVPSCQNLYKNSFTYHCL--ED----DKILQFDDAIQFLEQCERDKACVLVHCMFGKNRSAAIVIAYLMKCKGWRLAQSHQWVKERRPSVNLTEDVHQQLQEYEQKIFG---SVDGSNPTPLPALSAXMPSFSFGFP 813
            +T L     P EIL  FLYLGS  +ASR  +L   GI+ ++N   +C N ++  + Y  +  ED    D    F++AI F++  +     V VHC  G +RSA I +AYLM+    +L ++ ++VK+RR  ++       QL ++E ++     S +  +P           +  F FP
Sbjct:  165 STPLYDQGGPVEIL-SFLYLGSAYHASRKDMLDALGITALINVSANCPNHFEGHYQYKSIPVEDNHKADISSWFNEAIDFIDSIKDAGGRVFVHCQAGISRSATICLAYLMRTNRVKLDEAFEFVKQRRSIISPNFSFMGQLLQFESQVLAPHCSAEAGSPAMAVLDRGTSTTTVFNFP 342          
The following BLAST results are available for this feature:
BLAST of FC877884 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 39
Match NameE-valueIdentityDescription
SSH2_MOUSE4.636e-1529.65Protein phosphatase Slingshot homolog 2 OS=Mus mus... [more]
SSH2_HUMAN4.636e-1529.65Protein phosphatase Slingshot homolog 2 OS=Homo sa... [more]
DUS1_HUMAN4.636e-1531.28Dual specificity protein phosphatase 1 OS=Homo sap... [more]
DUSPR_DICDI1.033e-1429.19Probable rhodanese domain-containing dual specific... [more]
DUS8_MOUSE1.761e-1432.47Dual specificity protein phosphatase 8 OS=Mus musc... [more]
DUS2_HUMAN2.301e-1435.71Dual specificity protein phosphatase 2 OS=Homo sap... [more]
SSH_DROME3.005e-1431.17Protein phosphatase Slingshot OS=Drosophila melano... [more]
SSH_XENLA3.924e-1432.16Protein phosphatase Slingshot homolog OS=Xenopus l... [more]
DUS2_MOUSE5.125e-1435.71Dual specificity protein phosphatase 2 OS=Mus musc... [more]
DUS1_RAT5.125e-1430.73Dual specificity protein phosphatase 1 OS=Rattus n... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAQ5YO05RM1 IVIA1 Citrus clementina cDNA clone KN0AAQ5YO05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877884 ID=FC877884; Name=FC877884; organism=Citrus clementina; type=EST; length=858bp
TCAATAACAGTGACAATAGCAATTGCATAATCATAAATCAATCAATCAAA
CCACCGCAACAGTCTCATCAAACATCAATCAACTTTCTTTTTATCAAACA
TTTTCGGTTCTAATTTACCGTATTAATAATAAGGAAATTATAGTAATTAA
AATTTAGAGAAATAAATAATAAAGATTTGGTTGTTTGTTATGAGGAAGAG
GGAGAGAGAGAACCCCTGCTCTGTGTGCGGGCACTACCACAAGTACGAGG
AAGGAGAAGTTTGCGGGATTTGCGGCCACCGCTCTGCGTCGTCGGCAGAG
AAGACGACGACGCTCCAAGTCAGCGCGTTTCCGTCTGAGATCCTGCCCGA
TTTCCTCTATTTGGGCAGCTACGACAACGCGTCTCGCTCAGGGCTTCTGA
AGACTCAAGGGATCTCGCGTGTTCTTAATACGGTACCTTCTTGTCAAAAT
CTCTACAAGAACTCATTTACCTATCACTGCCTTGAAGATGACAAAATTTT
ACAATTCGATGATGCAATTCAGTTTTTAGAACAATGTGAGAGGGACAAAG
CTTGTGTTCTCGTGCACTGCATGTTTGGAAAAAACAGGTCGGCTGCTATT
GTAATAGCATACTTGATGAAGTGTAAAGGATGGAGACTTGCACAGAGTCA
TCAGTGGGTGAAAGAGCGGAGACCATCTGTTAACTTAACAGAAGATGTCC
ACCAACAGTTGCAGGAGTATGAACAGAAGATCTTTGGGTCAGTTGATGGT
AGCAATCCTACTCCCTTGCCTGCTCTGTCTGCANGCATGCCATCCTTTAG
CTTCGGCTTCCCAAAGGGTAATAATGATCCTGTTCCTGTACCTGTCCCTG
CCCCTGCC
back to top