FC877889

Overview
NameFC877889
Unique NameFC877889
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length810
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15154 contig Ccv1_Contig15154:4..812. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC877889 vs. ExPASy Swiss-Prot
Match: CYSH_STAHJ (Phosphoadenosine phosphosulfate reductase OS=Staphylococcus haemolyticus (strain JCSC1435) GN=cysH PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 6.089e-14
Identity = 53/166 (31.93%), Postives = 85/166 (51.20%), Query Frame = 2
Query:  278 EKVEGEEDFEQFAKELENASPLEIMDRALEKFGNDIAIAFS-GAEDVALIEYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFG-IRIEYMFPD-AVEVQALVRSKGLFSFYEDGHQECCRVRKVRPLRRALKGLRAWITGQRKDQSPGTRSEIPVVQVDPVFE 766
            E  EG+   +  + +       EI++ A   +G+ I  + S GAE + LI+  +      ++  LDT     ETY   D V++HF  +RIE   PD  +E QA   +  L   +++   +CC +RK++PL   L G  AW++G R+DQSP TR+    +  D  F+
Sbjct:    9 ENFEGDPFIDSISTDDATKGAYEILEWAYRTYGDSIVYSCSFGAESMVLIDLIYQIKPDAQIVFLDTDLHFQETYDLIDRVKEHFPKLRIEMKKPDLTLEEQADKYNPAL---WKNNPNQCCYIRKIKPLEEVLGGAVAWVSGLRRDQSP-TRANTNFINKDERFK 170          
BLAST of FC877889 vs. ExPASy Swiss-Prot
Match: CYSH_MYCA9 (Phosphoadenosine phosphosulfate reductase OS=Mycobacterium abscessus (strain ATCC 19977 / DSM 44196) GN=cysH PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 6.089e-14
Identity = 55/154 (35.71%), Postives = 80/154 (51.95%), Query Frame = 2
Query:  305 EQFAKELENASPLEIMDRALEKFGNDIAIAFSGAEDVALIEYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPD-AVEVQALVRSKGLFSFYEDGHQECCRVRKVRPLRRALKGLRAWITGQRKDQSPGTRSEIPVVQVDPVF 763
            E+ A EL++AS  E++    E FG +  +A S  +D  L++ A        V  LDTG    ET    D VE  + I +  + P+  V  Q  +  K LF+       ECCR+RKV PLR++L G  AW+TG R+  +P TR+  P++  D  F
Sbjct:   18 ERGAAELQDASAEELLRWTDENFGGNYVVA-SNMQDAVLVDLAAQVRPGVDVLFLDTGYHFAETIGTRDAVESVYDIHVVNVAPEQTVAQQDELVGKDLFA---SDPGECCRLRKVVPLRKSLAGYAAWVTGLRRVDAP-TRANAPLISFDEAF 166          
BLAST of FC877889 vs. ExPASy Swiss-Prot
Match: CYSH_RHIME (Phosphoadenosine phosphosulfate reductase OS=Rhizobium meliloti GN=cysH PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.357e-13
Identity = 44/120 (36.67%), Postives = 61/120 (50.83%), Query Frame = 2
Query:  401 GAEDVALIEYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPDAVEVQALVRSKGLFSFYE--DGHQECCRVRKVRPLRRALKGLRAWITGQRKDQSPGTRSEIPVVQVD 754
            G ED  +            V +L TGRL  ET    D+ E+ + I I+  +P+  ++ A V   G+  FYE  +    CC VRK++PL RAL G   WITG R+ QS G R+  P  + D
Sbjct:   57 GIEDQVITAAIGSNRLDIEVATLKTGRLFNETVALIDQTEETYDILIKRYYPEKADIDAYVAQYGMNGFYESVEARHACCGVRKLKPLARALDGASYWITGLRRGQS-GNRATTPFAEAD 175          
BLAST of FC877889 vs. ExPASy Swiss-Prot
Match: CYSH_GEOSW (Phosphoadenosine phosphosulfate reductase OS=Geobacillus sp. (strain WCH70) GN=cysH PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.357e-13
Identity = 56/173 (32.37%), Postives = 86/173 (49.71%), Query Frame = 2
Query:  296 EDFEQFAKELENASPLEIMDRALEKFGNDIAIAFS-GAEDVALIEYAHLTGRPFRVFSLDTGRLNPETYRFFDEV-EKHFGIRIEYMFPD-AVEVQALVRSKGLFSFYEDGHQECCRVRKVRPLRRALKGLRAWITGQRKDQSPGTRSEIPVVQVDPVFEGAG-----RWGWQ 790
            E+   F  + E    L+++  A  ++ +DI  A S G E + LI+          +  LDTG    ETY+  ++V EK+  +RI    P  ++E QA      L   ++    +CC +RKV PLR AL G+ AWI+G R++QSP TRS +  +  D  F+         W W+
Sbjct:   10 EEKPSFPHDNETKGALDVLTWAFRQYKDDIVYACSFGVEGIVLIDLISQVKPDAEIVFLDTGLHFRETYKTIEKVKEKYPSLRIVMKKPSLSLEEQAQQLGDEL---WKHNPNKCCELRKVIPLREALTGITAWISGLRREQSP-TRSHVEYINKDDKFKSIKICPLIHWTWK 178          
BLAST of FC877889 vs. ExPASy Swiss-Prot
Match: CYSH2_BACSU (Probable phosphoadenosine phosphosulfate reductase OS=Bacillus subtilis GN=yitB PE=3 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 5.155e-13
Identity = 46/144 (31.94%), Postives = 75/144 (52.08%), Query Frame = 2
Query:  341 LEIMDRALEKFGNDIAIAFS-GAEDVALIEYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHF-GIRIEYMFPDAVEVQALVRSKGLFSFYEDGHQECCRVRKVRPLRRALKGLRAWITGQRKDQSPGTRSEIPVVQVDPVFE 766
            L+++  A   +G  I  A S GAE + L++      +   +  LDTG    ETY   + V++ + G  I+ + P+    +   +  G    ++     CC++RK+ PL++ L G+ AWI+G R+DQSP TR  I  V +D  FE
Sbjct:   26 LDVLKWAYRTYGEKIVYACSFGAEGMVLLDLISKINKNAHIIFLDTGLHFQETYELIETVKERYPGFAIQMLEPELSLTEQGTKYGG--ELWKHNPNLCCQLRKIEPLKKHLSGMTAWISGLRRDQSP-TRKHIQYVNLDQKFE 166          
BLAST of FC877889 vs. ExPASy Swiss-Prot
Match: CYSH_GLOVI (Phosphoadenosine phosphosulfate reductase OS=Gloeobacter violaceus GN=cysH PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.959e-12
Identity = 49/154 (31.82%), Postives = 81/154 (52.60%), Query Frame = 2
Query:  305 EQFAKELENASPLEIMDRALEKFGNDIAIAFS-GAEDVALIEYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFG-IRIEYMFPDAVEVQALVRSKGLFS--FYEDGHQECCRVRKVRPLRRALKGLRAWITGQRKDQSPGTRSEIPVVQVD 754
            E  A++ E+ +P  I+  A+  FG+ + +A + G E + L++         + F L+TG   PET    D V   F  +++E + P    + ++ +   ++    ++     CC +RKV PL RAL   +AWI G R++QSP TR +I VVQ D
Sbjct:   18 EHLARQWEDLAPEAILAEAVRCFGDKLVLASAFGPESIILLDMLVKVWPRPQAFFLETGFHFPETLALKDRVLARFPQLQLEVVGP----LMSVAQQNAIYGERLHDRNPDHCCAIRKVEPLNRALAPYKAWIAGMRREQSP-TRGQIGVVQWD 166          
BLAST of FC877889 vs. ExPASy Swiss-Prot
Match: CYSH_STRCO (Phosphoadenosine phosphosulfate reductase OS=Streptomyces coelicolor GN=cysH PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 5.700e-12
Identity = 57/155 (36.77%), Postives = 75/155 (48.39%), Query Frame = 2
Query:  305 EQFAKELENASPLEIMDRALEKFGNDIAIAFSGAEDVALIEYAHLTGRPFR---VFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFP--DAVEVQALVRSKGLFSFYEDGHQECCRVRKVRPLRRALKGLRAWITGQRKDQSPGTRSEIPVVQVD 754
            E+  +ELE+A+ LEI+  A E FG+   +  S  ED  +   AHL  R      V  LDTG   PET    D VE    + +  + P     E  A    K     ++     CC +RKV+PL   L G RAW TG R+D+S  TR+  PVV  D
Sbjct:   18 ERAGRELEDATALEILRWAAETFGDRFCVT-SSMEDAVV---AHLASRALPGVDVVFLDTGYHFPETIGTRDAVEAVMDVNVITLTPRQTVAEQDAEYGPK----LHDRDPDLCCALRKVKPLEEGLAGYRAWATGLRRDESE-TRANTPVVGWD 163          
BLAST of FC877889 vs. ExPASy Swiss-Prot
Match: CYSH_GEOKA (Phosphoadenosine phosphosulfate reductase OS=Geobacillus kaustophilus GN=cysH PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 9.722e-12
Identity = 53/169 (31.36%), Postives = 78/169 (46.15%), Query Frame = 2
Query:  311 FAKELENASPLEIMDRALEKFGNDIAIAFS-GAEDVALIEYAHLTGRPFRVFSLDTGRLNPETYRFFDEV-EKHFGIRIEYMFPDAVEVQALVRSKGLFS--FYEDGHQECCRVRKVRPLRRALKGLRAWITGQRKDQSPGTRSEIPVVQVDPVFEGAG-----RWGWQ 790
            F  + E    L+++  A  ++G++I  A S G E + LI+          +  LDTG   PETY    +V EK+  +RI    P       L   K  F    ++    +CC +RKV PLR  L G+ AWI+G R++QSP TR  +  +  D  F          W W+
Sbjct:   15 FPSDNETKGALDVLAWAYREYGDEIVYACSFGIEGIVLIDLISQVKPDAEIVFLDTGLHFPETYDTIAKVKEKYPSLRIVMKQPRLT----LEEQKAQFGDELWKRDPNKCCELRKVIPLREVLTGVTAWISGLRREQSP-TRRHVEYINKDDKFRSIKVCPLIHWTWK 178          
BLAST of FC877889 vs. ExPASy Swiss-Prot
Match: CYSH_RHOE4 (Phosphoadenosine phosphosulfate reductase OS=Rhodococcus erythropolis (strain PR4 / NBRC 100887) GN=cysH PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.829e-11
Identity = 52/163 (31.90%), Postives = 77/163 (47.24%), Query Frame = 2
Query:  305 EQFAKELENASPLEIMDRALEKFGNDIA---------IAFSGAEDVALIEYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIR-IEYMFPDAVEVQALVRSKGLFSFYEDGHQECCRVRKVRPLRRALKGLRAWITGQRKDQSPGTRSEIPVVQVDPVF 763
            E+ A EL+ AS  E++    + FG+  +         I  S  +D  L+  A        V  LDTG   PET    D VE+ +G+  I      +V  Q +   K LF+        CC +RKV PL++ L G  AW+TG R+ ++P TR+  P++  D  F
Sbjct:   18 ERGAVELDGASAQELLQWTEDTFGDGASAATGDRNGYIVASNMQDGVLVHLAAQVHPGVDVLFLDTGYHFPETIGTRDAVEQVYGVNVINARALASVAEQDVAEGKDLFA---RDPNRCCALRKVAPLKQTLSGYSAWVTGIRRVEAP-TRANAPLISFDEAF 176          
BLAST of FC877889 vs. ExPASy Swiss-Prot
Match: CYSH_RHILO (Phosphoadenosine phosphosulfate reductase OS=Rhizobium loti GN=cysH PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.694e-11
Identity = 50/140 (35.71%), Postives = 73/140 (52.14%), Query Frame = 2
Query:  338 PLEIMDR-ALEKFGNDIAIAFS-GAEDVALIEYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGI-RIEYMFPDAVEVQALVRSKGLFSFYEDGHQECCRVRKVRPLRRALKGLRAWITGQRKDQSPGTRSEIPVVQ 748
            PLEI++R A E F ++IA   S GA+   L+       R   V  LDTG+   ET  + D +   FG+  I+ + P   E  AL R     + ++     CC VRKV PL R +   RAW TG+++ Q+  TR+ +PV +
Sbjct:   34 PLEIIERSARELFHDEIAAVSSFGADSAVLLHMIAEIDRTLPVIFLDTGKHFEETLGYRDALVADFGLTNIQVIKP---EEAALARIDPTGNLHQSNTDACCDVRKVEPLARGVAPFRAWFTGRKRFQA-STRAALPVFE 169          
The following BLAST results are available for this feature:
BLAST of FC877889 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
CYSH_STAHJ6.089e-1431.93Phosphoadenosine phosphosulfate reductase OS=Staph... [more]
CYSH_MYCA96.089e-1435.71Phosphoadenosine phosphosulfate reductase OS=Mycob... [more]
CYSH_RHIME1.357e-1336.67Phosphoadenosine phosphosulfate reductase OS=Rhizo... [more]
CYSH_GEOSW1.357e-1332.37Phosphoadenosine phosphosulfate reductase OS=Geoba... [more]
CYSH2_BACSU5.155e-1331.94Probable phosphoadenosine phosphosulfate reductase... [more]
CYSH_GLOVI1.959e-1231.82Phosphoadenosine phosphosulfate reductase OS=Gloeo... [more]
CYSH_STRCO5.700e-1236.77Phosphoadenosine phosphosulfate reductase OS=Strep... [more]
CYSH_GEOKA9.722e-1231.36Phosphoadenosine phosphosulfate reductase OS=Geoba... [more]
CYSH_RHOE42.829e-1131.90Phosphoadenosine phosphosulfate reductase OS=Rhodo... [more]
CYSH_RHILO3.694e-1135.71Phosphoadenosine phosphosulfate reductase OS=Rhizo... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA94CE05RM1 IVIA1 Citrus clementina cDNA clone IC0AAA94CE05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877889 ID=FC877889; Name=FC877889; organism=Citrus clementina; type=EST; length=810bp
CAAACATAAACACAAACACAAACACAAAATTTCAATAATCATGGCCCTGG
CTGTAACTTCTTCAAATTCAATTTCAAGCTCCAGTTTTGCTCTTTCTAGT
TCTTCAAATGACATTAAAGTTTCACAAATCGGTTCTTTCCGGTTAGTGGA
CCGGGCACACGTGGCTTCCACGAGCCTCTCTCAACGACGTAGTTTAGTAA
GACCGTTGAATGCCGAGCCAAAACGAAACGATTCCGTGGTGCCTCTGGCA
GCAACTCTCGCTACCCCTGAAGTGGCGGAGAAAGTAGAAGGGGAGGAGGA
TTTTGAGCAATTTGCTAAGGAGCTTGAAAATGCGTCACCTCTTGAAATCA
TGGATAGAGCTCTTGAAAAGTTTGGAAATGACATAGCGATTGCTTTCAGT
GGTGCTGAAGATGTTGCTTTGATCGAGTATGCCCATTTAACTGGTAGACC
ATTTAGGGTGTTTAGCCTGGATACTGGAAGGCTAAACCCAGAAACATATA
GATTCTTTGACGAAGTTGAGAAACATTTTGGCATACGTATTGAATACATG
TTTCCCGATGCTGTTGAAGTTCAGGCATTAGTGAGGAGCAAGGGGCTCTT
CTCTTTCTATGAGGATGGGCACCAGGAGTGCTGCCGTGTGAGGAAAGTGA
GGCCCCTTCGGAGGGCCCTCAAGGGATTGCGTGCCTGGATCACTGGCCAA
AGGAAAGATCAGTCTCCAGGTACTAGGTCTGAAATCCCTGTAGTCCAGGT
GGATCCAGTTTTTGAAGGGGCTGGAAGGTGGGGTTGGCAGCCTGGTGAAA
TGGAATCCAG
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