FC877890

Overview
NameFC877890
Unique NameFC877890
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length819
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC877890_ssr641 microsatellite FC877890_ssr641:641..652. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig11793 contig Ccv1_Contig11793:26..844. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC877890 vs. ExPASy Swiss-Prot
Match: EIF3G_NEMVE (Eukaryotic translation initiation factor 3 subunit G OS=Nematostella vectensis GN=v1g171563 PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 9.555e-23
Identity = 75/217 (34.56%), Postives = 105/217 (48.39%), Query Frame = 2
Query:  197 PPKQVIGPDENGVKKVIEYKFNDDGNKVKIXXXXRVRKLANARLSKRALERRNWAKFGDAVREDVGSRLTMVSTEEILLERPRAPGSKPEETKAAGDSLAQLGKGGAVLMVCRTCGKKGDHWTSRCPFKDLAAPAETFIDK--------PXXXXXXXXXXGVTKGTYVPPGMRAGAERTGTDM---RRRNDENSVRVTNLSEDTREPDLLELFRPFG 814
            PP   +   EN  K V EYK +D+G   KI    RV      R++K   +R+ W KFGD+  +  G   T  +  + +     +    P+ T+   D L +L   G  ++ CR C  KGDHWT++CP+KD        + +                     T G YV PG+R GA R G  M    +R++  ++RVTNLSE+TRE DL ELFRP G
Sbjct:   31 PPSSEVREGEN--KIVTEYKRDDEGKLQKIITTYRVE---TRRVAKEIAKRKLWKKFGDSKNDKPGPNKTTTNVCDDVFLILTSNKENPDATEE--DPLKKLS--GQKIVQCRIC--KGDHWTTKCPYKDQLEVIHQQLKEDDGSGQPGTPPSEPANPAAASTSGKYVAPGLRDGANRRGETMPSRSQRDETATIRVTNLSEETRESDLQELFRPLG 236          
BLAST of FC877890 vs. ExPASy Swiss-Prot
Match: EIF3G_ASPTN (Eukaryotic translation initiation factor 3 subunit G OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=tif35 PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 6.194e-22
Identity = 69/211 (32.70%), Postives = 101/211 (47.87%), Query Frame = 2
Query:  200 PKQVIGPDENGVKKVIEYKFNDDGNKVKIXXXXRVRKLANARLSKRALERRNWAKFGDAVREDVGSRLTMVSTEEILLERPRA--PGSKPEETKAAGDSLAQLGKGGAVLMVCRTCGKKGDHWTSRCPFKDLAAPA-ETFIDKPXXXXXXXXXXGVTKGTYVPPGMRAGAERTGTDMR---RRNDENSVRVTNLSEDTREPDLLELFRPFG 814
            P Q +  +++G K V+ Y+FNDDG KVK+    +   +    ++ +  ERR+WAKFG       G      S  E ++ RP         E  K  G+  +   +     + CR C   G+H+T+RCPFKD  AP  E   +            G   G+YVPP +R GA   G  M     ++D  ++RVTN+SE   E +L +LF  FG
Sbjct:   23 PAQQVTTNKDGTKTVVSYRFNDDGKKVKVTRRIKT-TVVREHVNPQVAERRSWAKFGLEKGHAAGPSFDTTSVGENIVFRPSVNWKAQAAEAEKDGGEKGSMKDQLKDKKVKCRIC--SGEHFTARCPFKDTMAPVDEAGAEGAGEDAPAAGAVGTGTGSYVPPHLRKGAAGGGERMAGKYEKDDLATLRVTNVSELAEEGELRDLFERFG 230          
BLAST of FC877890 vs. ExPASy Swiss-Prot
Match: EIF3G_CHAGB (Eukaryotic translation initiation factor 3 subunit G OS=Chaetomium globosum GN=TIF35 PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 3.074e-21
Identity = 80/227 (35.24%), Postives = 109/227 (48.02%), Query Frame = 2
Query:  197 PPKQVIGPDENGVKKVIEYKFNDDGNKVKIXXXXRV---RKLANARLSKRALERRNWAKFGDAVREDVGSRLTMVSTEEILLERPRAPGSKPEETKAAGDSLAQLGKGGAV--LMVCRTCGKKGDHWTSRCPFKDLAAP---------AETFIDKPXXXXXXXXXXGVT--KGTYVPPGMRAGA-----ERTGTDMRRRNDENSVRVTNLSEDTREPDLLELFRPFG 814
            PP Q I  +++G   +IEY+ ND G KVK     R    R++ N R++    ER+ WAKFGD+  +  G      +  E ++ RP     K E    A D  AQ  K       + CR C   G+H+T+RCP+KD  AP         A    D+P               KG+YVPP MRAGA     ER G     R+D  ++RVTN+SE   E +L ++F  FG
Sbjct:   29 PPPQKI-QNKDGTWTIIEYRINDLGQKVKATRRVRYVVRREVVNPRVA----ERKTWAKFGDSANDPKGPAPDTTTVGENIIFRPSVNWRK-EAKDEANDPNAQAMKDKLKDKKVKCRICN--GEHFTARCPYKDTMAPIGEAGPADVAAGMGDEPAAAGPAAAGAAGAGKKGSYVPPAMRAGAGGAQGERMGGKYGERDDLATLRVTNVSEMAEEQELRDMFERFG 247          
BLAST of FC877890 vs. ExPASy Swiss-Prot
Match: EIF3G_CULQU (Eukaryotic translation initiation factor 3 subunit G OS=Culex quinquefasciatus GN=eIF3-S4 PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 4.015e-21
Identity = 71/210 (33.81%), Postives = 107/210 (50.95%), Query Frame = 2
Query:  197 PPKQVIGPDENGVKKVIEYKFNDDGNKVKIXXXXRVRKLANARLSKRALERRNWAKFGDAVREDVG-SRLTMVSTEEILLERPRAPGSKPEETKA--AGDSLAQLGKGGAVLMVCRTCGKKGDHWTSRCPFKDLAAPAETFIDKPXXXXXXXXXXGVTKGTYVPPGMRAGAERT-GTDMRRRNDENSVRVTNLSEDTREPDLLELFRPFG 814
            PP +++   ENG K V EYK+N D  KVK+    ++ +L    + K   +R+NWAKFGD+  +  G +  T   +E+I ++      +K EE K+  A DSL  + K       CR C  +G+HW+ +CP+K  +  A      P           +  G YVPP MR   +   G + R R+D  ++R++NLSE   E DL EL +  G
Sbjct:   24 PPTEIV---ENGQKVVTEYKYNKDDKKVKVVRTYKITRLV---VPKSVAKRKNWAKFGDSAGDKPGPNPQTTFVSEDIYMQ---FVSNKEEEQKSDNALDSLKNIAK-------CRIC--EGEHWSVQCPYKGTSYEAGKAKPVPAAQPESSSAP-IKSGKYVPPSMRDSQKAALGANPRGRDDTTAIRISNLSEAMTEADLEELVKKIG 214          
BLAST of FC877890 vs. ExPASy Swiss-Prot
Match: EIF3G_NEOFI (Eukaryotic translation initiation factor 3 subunit G OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=TIF35 PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 6.848e-21
Identity = 70/216 (32.41%), Postives = 103/216 (47.69%), Query Frame = 2
Query:  200 PKQVIGPDENGVKKVIEYKFNDDGNKVKIXXXXRVRKLANARLSKRALERRNWAKFGDAVREDVGSRLTMVSTEEILLERP----RAPGSKPEETKAAGDSLAQLGKGGAVLMVCRTCGKKGDHWTSRCPFKDLAAP----AETFIDKPXXXXXXXXXXGVTKGTYVPPGMRAGAERTGTDMR---RRNDENSVRVTNLSEDTREPDLLELFRPFG 814
            P Q +  +++G K V+ Y+FND+G KVK+    +   +    ++ +  ERR+WAKFG       G      S  E ++ RP    RA  ++ E+      S+    K   V   CR C   G+H+T+RCPFKD  AP    A    +            G    +YVPP +R GA   G  M     ++D  ++RVTN+SE   E +L +LF  FG
Sbjct:   24 PAQQVTTNKDGTKTVVSYRFNDEGKKVKVTRRIKT-TVVREHVNPQVAERRSWAKFGLEKGHAAGPSFDTTSVGENIIFRPSVNWRAQAAEAEKAGPEKGSIKDQLKDKKV--KCRIC--SGEHFTARCPFKDTMAPVDETAAAGAEPGAEDVPAAGGLGAGTSSYVPPHLRKGAAAGGERMAGKYEKDDLATLRVTNVSELAEESELRDLFERFG 234          
BLAST of FC877890 vs. ExPASy Swiss-Prot
Match: EIF3G_EMENI (Eukaryotic translation initiation factor 3 subunit G OS=Emericella nidulans GN=tif35 PE=3 SV=2)

HSP 1 Score: 101.293 bits (251), Expect = 6.848e-21
Identity = 72/221 (32.58%), Postives = 105/221 (47.51%), Query Frame = 2
Query:  200 PKQVIGPDENGVKKVIEYKFNDDGNKVKIXXXXRVRKLANARLSKRALERRNWAKFGDAVREDVGSRLTMVSTEEILLERP----RAPGSKPEETKAAGDSLAQLGKGGAVLMVCRTCGKKGDHWTSRCPFKDLAAPAETFIDKP---------XXXXXXXXXXGVTKGTYVPPGMRAGAERTGTDMR---RRNDENSVRVTNLSEDTREPDLLELFRPFG 814
            P Q I  +++G K V+ Y+FND+G KVK+    +   +    ++ +  ERR WAKFG       G      S  E ++ RP    +A  ++ E+      S+    K   V   CR C   G+H+T+RCPFKD  AP    +D+P                   G   G+YVPP +R GA   G  M     ++D  ++RVTN+SE   E +L +LF  FG
Sbjct:   22 PPQQITTNKDGTKTVVSYRFNDEGKKVKVTRRIKT-TVVREHVNPQVAERRTWAKFGLEKGHAAGPSFDTTSVGENIVFRPSVNWKAQAAEAEKNGGEKGSIKDQLKDKKV--KCRIC--SGEHFTARCPFKDTMAP----VDEPGAGGAEGGAAAGEDAAGGLGAGGGSYVPPHLRKGAAGGGERMAGKYEKDDLATLRVTNVSELAEEQELRDLFERFG 233          
BLAST of FC877890 vs. ExPASy Swiss-Prot
Match: EIF3G_ASPCL (Eukaryotic translation initiation factor 3 subunit G OS=Aspergillus clavatus GN=tif35 PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 6.848e-21
Identity = 71/218 (32.57%), Postives = 105/218 (48.17%), Query Frame = 2
Query:  197 PPKQVIGPDENGVKKVIEYKFNDDGNKVKIXXXXRVRKLANARLSKRALERRNWAKFGDAVREDVGSRLTMVSTEEILLERP----RAPGSKPEETKAAGDSLAQLGKGGAVLMVCRTCGKKGDHWTSRCPFKDLAAPAETFI-----DKPXXXXXXXXXXGVTKGTYVPPGMRAGAERTGTDMR---RRNDENSVRVTNLSEDTREPDLLELFRPFG 814
            PP+QV   +++G K V+ Y+FND+G KVK+    +   +    ++ +  ERR+WAKFG       G      S  E ++ RP    RA  ++ E+      S+    K   V   CR C   G+H+T+RCPFKD  AP +        +            G    +YVPP MR GA   G  M     ++D  ++RVTN+SE   E ++ +LF  FG
Sbjct:   23 PPQQVT-TNKDGTKTVVSYRFNDEGKKVKVTRRIKT-TVVREHVNPQVAERRSWAKFGLEKGHAAGPSFDTTSVGENIVFRPSVNWRAQAAEAEKAGGEKGSIKDQLKDKKV--KCRIC--SGEHFTARCPFKDTMAPVDESTGAAGGEPGAEDEAAAGGLGAGTSSYVPPHMRKGAASGGERMAGKYEKDDLATLRVTNVSELAEESEIRDLFERFG 234          
BLAST of FC877890 vs. ExPASy Swiss-Prot
Match: EIF3G_ANOGA (Eukaryotic translation initiation factor 3 subunit G OS=Anopheles gambiae GN=eIF3-S4 PE=3 SV=3)

HSP 1 Score: 101.293 bits (251), Expect = 6.848e-21
Identity = 78/212 (36.79%), Postives = 109/212 (51.42%), Query Frame = 2
Query:  197 PPKQVIGPDENGVKKVIEYKFNDDGNKVKIXXXXRVRKLANARLSKRALERRNWAKFGDAVREDVGS--RLTMVSTEEILLERPRAPGSKPEETKA--AGDSLAQLGKGGAVLMVCRTCGKKGDHWTSRCPFKDLAAPAETFIDKPXXXXXXXXXXGVTKGTYVPPGMRA--GAERTGTDMRRRNDENSVRVTNLSEDTREPDLLELFRPFG 814
            PP +VI   ENG K V EYK+N D  KVK+    R  K++   + K    R++ AKFGD+  +  G   + TMVS E++ ++      +K EE K   A DS+  + K       CRTC  +G+HW+  CP+K+ A    T   KP              G YVPP M+   G    G  MR R+D +++R++NLSE   E DL EL + FG
Sbjct:   24 PPSEVI---ENGQKIVTEYKYNKDDKKVKVV---RTYKISRVVVPKCVARRKSLAKFGDSATDRPGPNPQTTMVS-EDVFMQFIT---NKEEEQKNENALDSMKNIVK-------CRTC--EGEHWSFHCPYKNSAYDKPT---KPTTAPVPETTSSSKPGKYVPPHMKESQGKPGIGGAMRGRDDTSAIRISNLSEAMTEADLEELVKKFG 213          
BLAST of FC877890 vs. ExPASy Swiss-Prot
Match: EIF3G_ASPOR (Eukaryotic translation initiation factor 3 subunit G OS=Aspergillus oryzae GN=tif35 PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 8.944e-21
Identity = 71/218 (32.57%), Postives = 105/218 (48.17%), Query Frame = 2
Query:  200 PKQVIGPDENGVKKVIEYKFNDDGNKVKIXXXXRVRKLANARLSKRALERRNWAKFGDAVREDVGSRLTMVSTEEILLERP----RAPGSKPEETKAAGDSLAQLGKGGAVLMVCRTCGKKGDHWTSRCPFKDLAAPAETFIDKP------XXXXXXXXXXGVTKGTYVPPGMRAGAERTGTDMR---RRNDENSVRVTNLSEDTREPDLLELFRPFG 814
            P Q +  +++G K V+ Y+FND+G KVK+    +   +    ++ +  ERR+WAKFG       G      S  E +  RP    +A  ++ E+      S+    K   V   CR C   G+H+T+RCPFKD  AP    +D+P                G   G+YVPP +R GA   G  M     ++D  ++RVTN+SE   E +L +LF  FG
Sbjct:   23 PAQQVTTNKDGTKTVVSYRFNDEGKKVKVTRRIKT-TVVREHVNPQVAERRSWAKFGLEKGHAPGPSFDTTSVGENIAFRPSINWKAQAAEAEKNGGEKGSMKDQLKDKKV--KCRIC--SGEHFTARCPFKDTMAP----VDEPTAGGAGEDDEAAAGAVGTGSGSYVPPHLRKGAAGGGERMGGKFEKDDLATLRVTNVSELAEEGELRDLFERFG 231          
BLAST of FC877890 vs. ExPASy Swiss-Prot
Match: EI3G1_DROAN (Eukaryotic translation initiation factor 3 subunit G-1 OS=Drosophila ananassae GN=eIF3-S4-1 PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.526e-20
Identity = 67/199 (33.67%), Postives = 98/199 (49.25%), Query Frame = 2
Query:  224 ENGVKKVIEYKFNDDGNKVKIXXXXRVRKLANARLSKRALERRNWAKFGDAVREDVG--SRLTMVSTEEILLERPRAPGSKPEETKAAGDSLAQLGKGGAVLMVCRTCGKKGDHWTSRCPFKDLAAPAETFIDKPXXXXXXXXXXGVTKGTYVPPGMRAGAERTGTDMRRRNDENSVRVTNLSEDTREPDLLELFRPFG 814
            ENG K V EYK+N D  K K+    R  K++   + K   +RR W KFG++  +  G  S+ TMVS EEI+++   +     +E + A D L    K    +  CR C   G+HW+  CP+K  A      ++K               G YVPP ++    + G  MR R+D  ++R++NLSE   E DL EL +  G
Sbjct:   30 ENGHKYVTEYKYNKDDKKTKVV---RTYKISKQVVPKTVAKRRTWTKFGESKNDKPGPNSQTTMVS-EEIIMQFLNS-----KEDEKANDPLLDPTKN---IAKCRICN--GEHWSVNCPYKGTAMDTN-MMEKKATAAAAAAVDAPKSGKYVPPFLKDSVGKVGMGMRGRDDTAAIRISNLSESMTEADLEELVKKIG 213          
The following BLAST results are available for this feature:
BLAST of FC877890 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
EIF3G_NEMVE9.555e-2334.56Eukaryotic translation initiation factor 3 subunit... [more]
EIF3G_ASPTN6.194e-2232.70Eukaryotic translation initiation factor 3 subunit... [more]
EIF3G_CHAGB3.074e-2135.24Eukaryotic translation initiation factor 3 subunit... [more]
EIF3G_CULQU4.015e-2133.81Eukaryotic translation initiation factor 3 subunit... [more]
EIF3G_NEOFI6.848e-2132.41Eukaryotic translation initiation factor 3 subunit... [more]
EIF3G_EMENI6.848e-2132.58Eukaryotic translation initiation factor 3 subunit... [more]
EIF3G_ASPCL6.848e-2132.57Eukaryotic translation initiation factor 3 subunit... [more]
EIF3G_ANOGA6.848e-2136.79Eukaryotic translation initiation factor 3 subunit... [more]
EIF3G_ASPOR8.944e-2132.57Eukaryotic translation initiation factor 3 subunit... [more]
EI3G1_DROAN1.526e-2033.67Eukaryotic translation initiation factor 3 subunit... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAQ5YO06RM1 IVIA1 Citrus clementina cDNA clone KN0AAQ5YO06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877890 ID=FC877890; Name=FC877890; organism=Citrus clementina; type=EST; length=819bp
ATCTTTTTTAACTTTCACAAAAAATCGAAATCGCAAACCCTAAAACGCTT
TGTCTCGCATCCTCTCCAACGCTTGTGTTTTTCTTAATCTGATTCATTCG
AAAAAGATGTCGGTTTCGACTCAAAATCCGACCCAACCAAAGCTCCGTTG
GAGCGAACTGGACGAAGAAGACGGCGAGGATTTGGACTTCCTGCTGCCGC
CTAAACAAGTGATCGGCCCCGACGAGAACGGAGTCAAGAAAGTTATTGAA
TACAAGTTTAACGATGACGGCAATAAGGTCAAAATAACCACCACCACGCG
CGTGCGCAAGCTCGCTAACGCTCGTCTCAGCAAACGCGCGCTGGAGAGGA
GAAACTGGGCCAAGTTCGGCGACGCCGTTCGCGAAGACGTCGGTAGCAGA
CTTACCATGGTCTCCACCGAAGAGATCTTGCTGGAACGGCCTAGGGCTCC
TGGTAGCAAACCAGAAGAGACAAAGGCTGCAGGAGATTCCTTGGCGCAAC
TTGGGAAAGGTGGTGCTGTTCTCATGGTGTGTAGGACTTGTGGTAAGAAG
GGTGATCACTGGACGTCAAGGTGCCCTTTCAAGGATCTTGCTGCTCCAGC
TGAGACATTCATTGATAAACCAGCTGCATCAGAGACTGCAGCTGCTGCTG
CTGGCGTGACCAAGGGAACATATGTTCCTCCTGGCATGAGAGCAGGGGCG
GAGAGAACTGGAACCGATATGAGACGCAGGAATGATGAGAACTCTGTTAG
GGTCACCAACCTATCGGAGGACACTCGGGAACCTGACTTGCTTGAGCTCT
TCCGACCTTTTGGTGCTGT
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